RNA–Protein interactions for RNA: ENST00000448078.1

USP49-205, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 3

Gene USP49, Length 480 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-205ENST00000448078 HDAC9Q9UKV0 1011 aa7.72□□□□□ -1.17
USP49-205ENST00000448078 SCN4AP35499 1836 aa7.72□□□□□ -1.17
USP49-205ENST00000448078 FAM221AA4D161 298 aa7.71□□□□□ -1.18
USP49-205ENST00000448078 KLRG2A4D1S0 409 aaPredicted RBP7.71□□□□□ -1.18
USP49-205ENST00000448078 TRAF5O00463 557 aa7.71□□□□□ -1.18
USP49-205ENST00000448078 ETV3P41162 512 aa7.71□□□□□ -1.18
USP49-205ENST00000448078 IRAK1P51617 712 aa7.71□□□□□ -1.18
USP49-205ENST00000448078 HUNKP57058 714 aa7.71□□□□□ -1.18
USP49-205ENST00000448078 PLCL1Q15111 1095 aa7.71□□□□□ -1.18
USP49-205ENST00000448078 AOC3Q16853 763 aa7.71□□□□□ -1.18
USP49-205ENST00000448078 CDKAL1Q5VV42 579 aa7.71□□□□□ -1.18
USP49-205ENST00000448078 CTU1Q7Z7A3 348 aaKnown RBP7.71□□□□□ -1.18
USP49-205ENST00000448078 MISP3Q96FF7 219 aa7.71□□□□□ -1.18
USP49-205ENST00000448078 RBM17Q96I25 401 aaKnown RBP7.71□□□□□ -1.18
USP49-205ENST00000448078 PODXL2Q9NZ53 605 aa7.71□□□□□ -1.18
USP49-205ENST00000448078 REV1Q9UBZ9 1251 aa7.71□□□□□ -1.18
USP49-205ENST00000448078 MAPK8IP1Q9UQF2 711 aa7.71□□□□□ -1.18
USP49-205ENST00000448078 NIP7Q9Y221 180 aaKnown RBP eCLIP7.71□□□□□ -1.18
USP49-205ENST00000448078 PCDHGB7Q9Y5F8 929 aa7.71□□□□□ -1.18
USP49-205ENST00000448078 MYH14Q7Z406 1995 aaKnown RBP7.7□□□□□ -1.18
USP49-205ENST00000448078 SCAMP3O14828 347 aaKnown RBP7.7□□□□□ -1.18
USP49-205ENST00000448078 HTR3BO95264 441 aa7.7□□□□□ -1.18
USP49-205ENST00000448078 BNIP3Q12983 259 aa7.7□□□□□ -1.18
USP49-205ENST00000448078 FBXW10Q5XX13 1052 aa7.7□□□□□ -1.18
USP49-205ENST00000448078 ZNF790Q6PG37 636 aa7.7□□□□□ -1.18
USP49-205ENST00000448078 GK5Q6ZS86 529 aa7.7□□□□□ -1.18
USP49-205ENST00000448078 MCATQ8IVS2 390 aaKnown RBP7.7□□□□□ -1.18
USP49-205ENST00000448078 MRPL41Q8IXM3 137 aaKnown RBP7.7□□□□□ -1.18
USP49-205ENST00000448078 MFSD4AQ8N468 514 aa7.7□□□□□ -1.18
USP49-205ENST00000448078 AGBL5Q8NDL9 886 aa7.7□□□□□ -1.18
USP49-205ENST00000448078 NKD1Q969G9 470 aa7.7□□□□□ -1.18
USP49-205ENST00000448078 ACSF2Q96CM8 615 aaPredicted RBP7.7□□□□□ -1.18
USP49-205ENST00000448078 METTL5Q9NRN9 209 aaKnown RBP7.7□□□□□ -1.18
USP49-205ENST00000448078 UBP1Q9NZI7 540 aa7.7□□□□□ -1.18
USP49-205ENST00000448078 KNSTRNQ9Y448 316 aa7.7□□□□□ -1.18
USP49-205ENST00000448078 PCDHB14Q9Y5E9 798 aa7.7□□□□□ -1.18
USP49-205ENST00000448078 CCDC88AQ3V6T2 1871 aa7.7□□□□□ -1.18
USP49-205ENST00000448078 UPK3BL1B0FP48 263 aa7.69□□□□□ -1.18
USP49-205ENST00000448078 UPK3BL2E5RIL1 263 aa7.69□□□□□ -1.18
USP49-205ENST00000448078 PPIP5K2O43314 1243 aa7.69□□□□□ -1.18
USP49-205ENST00000448078 CAMTA2O94983 1202 aa7.69□□□□□ -1.18
USP49-205ENST00000448078 A1BGP04217 495 aa7.69□□□□□ -1.18
USP49-205ENST00000448078 GBP1P32455 592 aa7.69□□□□□ -1.18
USP49-205ENST00000448078 OXCT1P55809 520 aa7.69□□□□□ -1.18
USP49-205ENST00000448078 IKZF1Q13422 519 aa7.69□□□□□ -1.18
USP49-205ENST00000448078 ZNF394Q53GI3 561 aa7.69□□□□□ -1.18
USP49-205ENST00000448078 RGMBQ6NW40 437 aa7.69□□□□□ -1.18
USP49-205ENST00000448078 DCPSQ96C86 337 aaKnown RBP7.69□□□□□ -1.18
USP49-205ENST00000448078 ZNF496Q96IT1 587 aaPredicted RBP7.69□□□□□ -1.18
USP49-205ENST00000448078 HEXIM2Q96MH2 286 aaKnown RBP7.69□□□□□ -1.18
USP49-205ENST00000448078 MKNK2Q9HBH9 465 aa7.69□□□□□ -1.18
USP49-205ENST00000448078 BRMS1Q9HCU9 246 aa7.69□□□□□ -1.18
USP49-205ENST00000448078 GPRC5DQ9NZD1 345 aa7.69□□□□□ -1.18
USP49-205ENST00000448078 ZNRF3Q9ULT6 936 aa7.69□□□□□ -1.18
USP49-205ENST00000448078 LOC100996750A0A140TA64 210 aa7.68□□□□□ -1.18
USP49-205ENST00000448078 BTBD11A6QL63 1104 aa7.68□□□□□ -1.18
USP49-205ENST00000448078 EOMESO95936 686 aa7.68□□□□□ -1.18
USP49-205ENST00000448078 SNRPA1P09661 255 aaKnown RBP7.68□□□□□ -1.18
USP49-205ENST00000448078 RAG1P15918 1043 aa7.68□□□□□ -1.18
USP49-205ENST00000448078 IL13P35225 146 aa7.68□□□□□ -1.18
USP49-205ENST00000448078 CAP2P40123 477 aa7.68□□□□□ -1.18
USP49-205ENST00000448078 ZNF165P49910 485 aa7.68□□□□□ -1.18
USP49-205ENST00000448078 FANCCQ00597 558 aa7.68□□□□□ -1.18
USP49-205ENST00000448078 ZNF574Q6ZN55 896 aaPredicted RBP7.68□□□□□ -1.18
USP49-205ENST00000448078 RGS22Q8NE09 1264 aa7.68□□□□□ -1.18
USP49-205ENST00000448078 RIN3Q8TB24 985 aa7.68□□□□□ -1.18
USP49-205ENST00000448078 KRTAP4-6Q9BYQ5 205 aa7.68□□□□□ -1.18
USP49-205ENST00000448078 GLIS2Q9BZE0 524 aaPredicted RBP7.68□□□□□ -1.18
USP49-205ENST00000448078 ADAMTS1Q9UHI8 967 aa7.68□□□□□ -1.18
USP49-205ENST00000448078 PGAP2Q9UHJ9 254 aa7.68□□□□□ -1.18
USP49-205ENST00000448078 OAS3Q9Y6K5 1087 aaKnown RBP7.68□□□□□ -1.18
USP49-205ENST00000448078 TIAM2Q8IVF5 1701 aa7.68□□□□□ -1.18
USP49-205ENST00000448078 HEG1Q9ULI3 1381 aa7.68□□□□□ -1.18
USP49-205ENST00000448078 DICER1Q9UPY3 1922 aaKnown RBP7.68□□□□□ -1.18
USP49-205ENST00000448078 COL5A3P25940 1745 aaPredicted RBP7.67□□□□□ -1.18
USP49-205ENST00000448078 H3BS24 57 aa7.67□□□□□ -1.18
USP49-205ENST00000448078 IGF2BP3O00425 579 aaKnown RBP eCLIP7.67□□□□□ -1.18
USP49-205ENST00000448078 HMOX1P09601 288 aa7.67□□□□□ -1.18
USP49-205ENST00000448078 KIF23Q02241 960 aaPredicted RBP7.67□□□□□ -1.18
USP49-205ENST00000448078 PRKCQQ04759 706 aa7.67□□□□□ -1.18
USP49-205ENST00000448078 MTHFSDQ2M296 383 aaKnown RBP7.67□□□□□ -1.18
USP49-205ENST00000448078 CYB5D2Q8WUJ1 264 aa7.67□□□□□ -1.18
USP49-205ENST00000448078 BCL7CQ8WUZ0 217 aaPredicted RBP7.67□□□□□ -1.18
USP49-205ENST00000448078 ASB11Q8WXH4 323 aa7.67□□□□□ -1.18
USP49-205ENST00000448078 RTF1Q92541 710 aaKnown RBP7.67□□□□□ -1.18
USP49-205ENST00000448078 PANK3Q9H999 370 aa7.67□□□□□ -1.18
USP49-205ENST00000448078 RNF186Q9NXI6 227 aa7.67□□□□□ -1.18
USP49-205ENST00000448078 VAV3Q9UKW4 847 aa7.67□□□□□ -1.18
USP49-205ENST00000448078 POLR3KQ9Y2Y1 108 aaPredicted RBP7.67□□□□□ -1.18
USP49-205ENST00000448078 CDHR2Q9BYE9 1310 aa7.67□□□□□ -1.18
USP49-205ENST00000448078 VIRMAQ69YN4 1812 aaKnown RBP7.66□□□□□ -1.18
USP49-205ENST00000448078 CHURC1-FNTBB4DL54 471 aa7.66□□□□□ -1.18
USP49-205ENST00000448078 TCERG1O14776 1098 aaKnown RBP7.66□□□□□ -1.18
USP49-205ENST00000448078 DIAPH1O60610 1272 aaKnown RBP7.66□□□□□ -1.18
USP49-205ENST00000448078 ADAMTS4O75173 837 aa7.66□□□□□ -1.18
USP49-205ENST00000448078 BBOX1O75936 387 aa7.66□□□□□ -1.18
USP49-205ENST00000448078 RECKO95980 971 aa7.66□□□□□ -1.18
USP49-205ENST00000448078 PRNPP04156 253 aa7.66□□□□□ -1.18
USP49-205ENST00000448078 RBM25P49756 843 aaKnown RBP7.66□□□□□ -1.18
USP49-205ENST00000448078 GMPSP49915 693 aaPredicted RBP7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms