RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 TRIM74Q86UV6 250 aa21.14■□□□□ 0.97
HMGA1-205ENST00000447654 TRIM73Q86UV7 250 aa21.14■□□□□ 0.97
HMGA1-205ENST00000447654 NOSTRINQ8IVI9 506 aa21.14■□□□□ 0.97
HMGA1-205ENST00000447654 RBM12BQ8IXT5 1001 aaKnown RBP21.14■□□□□ 0.97
HMGA1-205ENST00000447654 LINC00116Q8NCU8 138 aa21.14■□□□□ 0.97
HMGA1-205ENST00000447654 SMCR8Q8TEV9 937 aaPredicted RBP21.14■□□□□ 0.97
HMGA1-205ENST00000447654 ZNF512BQ96KM6 892 aaPredicted RBP21.14■□□□□ 0.97
HMGA1-205ENST00000447654 LACRTQ9GZZ8 138 aa21.14■□□□□ 0.97
HMGA1-205ENST00000447654 STK36Q9NRP7 1315 aa21.14■□□□□ 0.97
HMGA1-205ENST00000447654 RASSF10A6NK89 507 aa21.13■□□□□ 0.97
HMGA1-205ENST00000447654 VIMP08670 466 aaKnown RBP21.13■□□□□ 0.97
HMGA1-205ENST00000447654 DRD4P21917 467 aa21.13■□□□□ 0.97
HMGA1-205ENST00000447654 ADD2P35612 726 aa21.13■□□□□ 0.97
HMGA1-205ENST00000447654 AGAP11Q8TF27 550 aa21.13■□□□□ 0.97
HMGA1-205ENST00000447654 KCNJ18B7U540 433 aa21.13■□□□□ 0.97
HMGA1-205ENST00000447654 UBXN1Q04323 297 aa21.13■□□□□ 0.97
HMGA1-205ENST00000447654 MTA1Q13330 715 aa21.13■□□□□ 0.97
HMGA1-205ENST00000447654 KCNJ12Q14500 433 aa21.13■□□□□ 0.97
HMGA1-205ENST00000447654 PUM3Q15397 648 aaKnown RBP21.13■□□□□ 0.97
HMGA1-205ENST00000447654 C3orf67Q6ZVT6 689 aa21.13■□□□□ 0.97
HMGA1-205ENST00000447654 CPLX4Q7Z7G2 160 aa21.13■□□□□ 0.97
HMGA1-205ENST00000447654 BICD1Q96G01 975 aa21.13■□□□□ 0.97
HMGA1-205ENST00000447654 VPS16Q9H269 839 aa21.13■□□□□ 0.97
HMGA1-205ENST00000447654 PLAAQ9Y263 795 aa21.13■□□□□ 0.97
HMGA1-205ENST00000447654 WTIPA6NIX2 430 aaPredicted RBP21.12■□□□□ 0.97
HMGA1-205ENST00000447654 SPDYE3A6NKU9 549 aa21.12■□□□□ 0.97
HMGA1-205ENST00000447654 ASAP2O43150 1006 aa21.12■□□□□ 0.97
HMGA1-205ENST00000447654 IDH1O75874 414 aaKnown RBP21.12■□□□□ 0.97
HMGA1-205ENST00000447654 KIF5BP33176 963 aa21.12■□□□□ 0.97
HMGA1-205ENST00000447654 DPYDQ12882 1025 aa21.12■□□□□ 0.97
HMGA1-205ENST00000447654 NCOA7Q8NI08 942 aa21.12■□□□□ 0.97
HMGA1-205ENST00000447654 LPIN2Q92539 896 aa21.12■□□□□ 0.97
HMGA1-205ENST00000447654 RAPGEF5Q92565 580 aa21.12■□□□□ 0.97
HMGA1-205ENST00000447654 IQCDQ96DY2 449 aa21.12■□□□□ 0.97
HMGA1-205ENST00000447654 C8orf37Q96NL8 207 aa21.12■□□□□ 0.97
HMGA1-205ENST00000447654 AATFQ9NY61 560 aaKnown RBP eCLIP21.12■□□□□ 0.975e-10■□□□□ 8.3
HMGA1-205ENST00000447654 NFU1Q9UMS0 254 aa21.12■□□□□ 0.97
HMGA1-205ENST00000447654 LBRQ14739 615 aaKnown RBP21.12■□□□□ 0.97
HMGA1-205ENST00000447654 ARHGAP22Q7Z5H3 698 aa21.12■□□□□ 0.97
HMGA1-205ENST00000447654 GRAMD1CQ8IYS0 662 aa21.12■□□□□ 0.97
HMGA1-205ENST00000447654 MB21D1Q8N884 522 aa21.12■□□□□ 0.97
HMGA1-205ENST00000447654 FAM81AQ8TBF8 368 aa21.12■□□□□ 0.97
HMGA1-205ENST00000447654 WASF1Q92558 559 aa21.12■□□□□ 0.97
HMGA1-205ENST00000447654 MROH5Q6ZUA9 1318 aa21.11■□□□□ 0.97
HMGA1-205ENST00000447654 ECM29Q5VYK3 1845 aa21.11■□□□□ 0.97
HMGA1-205ENST00000447654 LGALS16A8MUM7 142 aa21.11■□□□□ 0.97
HMGA1-205ENST00000447654 DIAPH2O60879 1101 aa21.11■□□□□ 0.97
HMGA1-205ENST00000447654 CARSP49589 748 aaKnown RBP21.11■□□□□ 0.97
HMGA1-205ENST00000447654 MRPS35P82673 323 aaKnown RBP21.11■□□□□ 0.97
HMGA1-205ENST00000447654 SGSM1Q2NKQ1 1148 aa21.11■□□□□ 0.97
HMGA1-205ENST00000447654 CFAP221Q4G0U5 840 aa21.11■□□□□ 0.97
HMGA1-205ENST00000447654 B4GALNT2Q8NHY0 566 aa21.11■□□□□ 0.97
HMGA1-205ENST00000447654 LRRC45Q96CN5 670 aa21.11■□□□□ 0.97
HMGA1-205ENST00000447654 TCRBV5S4A2TA0A5A2 114 aa21.1■□□□□ 0.97
HMGA1-205ENST00000447654 HPDP32754 393 aaPredicted RBP21.1■□□□□ 0.97
HMGA1-205ENST00000447654 RASGRF1Q13972 1273 aa21.1■□□□□ 0.97
HMGA1-205ENST00000447654 CHMP6Q96FZ7 201 aa21.1■□□□□ 0.97
HMGA1-205ENST00000447654 TAB2Q9NYJ8 693 aa21.1■□□□□ 0.97
HMGA1-205ENST00000447654 ZNF532Q9HCE3 1301 aa21.1■□□□□ 0.97
HMGA1-205ENST00000447654 COL5A3P25940 1745 aaPredicted RBP21.1■□□□□ 0.97
HMGA1-205ENST00000447654 LRRD1A4D1F6 860 aa21.1■□□□□ 0.97
HMGA1-205ENST00000447654 GRID2IPA4D2P6 1211 aa21.1■□□□□ 0.97
HMGA1-205ENST00000447654 RCCD1A6NED2 376 aa21.1■□□□□ 0.97
HMGA1-205ENST00000447654 H7C1D1 291 aa21.1■□□□□ 0.97
HMGA1-205ENST00000447654 CLTAP09496 248 aa21.1■□□□□ 0.97
HMGA1-205ENST00000447654 GNAT1P11488 350 aa21.1■□□□□ 0.97
HMGA1-205ENST00000447654 CTCFP49711 727 aaPredicted RBP21.1■□□□□ 0.97
HMGA1-205ENST00000447654 ANTXR2P58335 489 aa21.1■□□□□ 0.97
HMGA1-205ENST00000447654 SAFBQ15424 915 aaKnown RBP eCLIP21.1■□□□□ 0.97
HMGA1-205ENST00000447654 SPA17Q15506 151 aa21.1■□□□□ 0.97
HMGA1-205ENST00000447654 PAGE5Q96GU1 130 aa21.1■□□□□ 0.97
HMGA1-205ENST00000447654 SH2D4AQ9H788 454 aa21.1■□□□□ 0.97
HMGA1-205ENST00000447654 NHEJ1Q9H9Q4 299 aaPredicted RBP21.1■□□□□ 0.97
HMGA1-205ENST00000447654 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.1■□□□□ 0.97
HMGA1-205ENST00000447654 CTNND2Q9UQB3 1225 aa21.1■□□□□ 0.97
HMGA1-205ENST00000447654 CICQ96RK0 1608 aaPredicted RBP21.09■□□□□ 0.97
HMGA1-205ENST00000447654 SMIM24O75264 130 aa21.09■□□□□ 0.97
HMGA1-205ENST00000447654 FAM153BP0C7A2 387 aa21.09■□□□□ 0.97
HMGA1-205ENST00000447654 PDE6AP16499 860 aa21.09■□□□□ 0.97
HMGA1-205ENST00000447654 PAK1Q13153 545 aa21.09■□□□□ 0.97
HMGA1-205ENST00000447654 FAM153CQ494X1 144 aa21.09■□□□□ 0.97
HMGA1-205ENST00000447654 OSBPL1AQ9BXW6 950 aa21.09■□□□□ 0.97
HMGA1-205ENST00000447654 FOXP1Q9H334 677 aaPredicted RBP21.09■□□□□ 0.97
HMGA1-205ENST00000447654 FAM153AQ9UHL3 310 aa21.09■□□□□ 0.97
HMGA1-205ENST00000447654 L3MBTL1Q9Y468 752 aa21.09■□□□□ 0.97
HMGA1-205ENST00000447654 TAF1P21675 1872 aa21.09■□□□□ 0.97
HMGA1-205ENST00000447654 GPR75-ASB3A0A0A6YYF3 556 aa21.09■□□□□ 0.97
HMGA1-205ENST00000447654 WFS1O76024 890 aa21.09■□□□□ 0.97
HMGA1-205ENST00000447654 HEXIM1O94992 359 aaKnown RBP21.09■□□□□ 0.97
HMGA1-205ENST00000447654 EEF1GP26641 437 aaKnown RBP21.09■□□□□ 0.97
HMGA1-205ENST00000447654 METAP2P50579 478 aaKnown RBP eCLIP21.09■□□□□ 0.973e-15■■■□□ 14.6
HMGA1-205ENST00000447654 DYNC1I2Q13409 638 aaKnown RBP21.09■□□□□ 0.97
HMGA1-205ENST00000447654 PARP10Q53GL7 1025 aa21.09■□□□□ 0.97
HMGA1-205ENST00000447654 FAM182BQ5T319 152 aa21.09■□□□□ 0.97
HMGA1-205ENST00000447654 RALYLQ86SE5 291 aaKnown RBP21.09■□□□□ 0.97
HMGA1-205ENST00000447654 PNMA8AQ86V59 439 aaPredicted RBP21.09■□□□□ 0.97
HMGA1-205ENST00000447654 GORASP1Q9BQQ3 440 aa21.09■□□□□ 0.97
HMGA1-205ENST00000447654 SUDS3Q9H7L9 328 aaPredicted RBP21.09■□□□□ 0.97
HMGA1-205ENST00000447654 EPB41L5Q9HCM4 733 aa21.09■□□□□ 0.97
HMGA1-205ENST00000447654 ASB3Q9Y575 518 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms