RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.97□□□□□ -0.81
COPB1-202ENST00000439561 SMCO2A6NFE2 343 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 WTIPA6NIX2 430 aaPredicted RBP9.97□□□□□ -0.81
COPB1-202ENST00000439561 BUB1BO60566 1050 aaPredicted RBP9.97□□□□□ -0.81
COPB1-202ENST00000439561 CLSTN1O94985 981 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 USP17L8P0C7I0 530 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 KRT13P13646 458 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 PPP2R5AQ15172 486 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 ASIC2Q16515 512 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 PTGISQ16647 500 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 KRT79Q5XKE5 535 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 HIBCHQ6NVY1 386 aaPredicted RBP9.97□□□□□ -0.81
COPB1-202ENST00000439561 SPATS2Q86XZ4 545 aaKnown RBP9.97□□□□□ -0.81
COPB1-202ENST00000439561 RHOBTB3O94955 611 aa9.96□□□□□ -0.81
COPB1-202ENST00000439561 MAP2K1Q02750 393 aaPredicted RBP9.96□□□□□ -0.81
COPB1-202ENST00000439561 GKAP1Q5VSY0 366 aaPredicted RBP9.96□□□□□ -0.81
COPB1-202ENST00000439561 SUSD4Q5VX71 490 aa9.96□□□□□ -0.81
COPB1-202ENST00000439561 KCNV1Q6PIU1 500 aa9.96□□□□□ -0.81
COPB1-202ENST00000439561 RUFY4Q6ZNE9 571 aa9.96□□□□□ -0.81
COPB1-202ENST00000439561 RPAINQ86UA6 219 aa9.96□□□□□ -0.81
COPB1-202ENST00000439561 ZNF507Q8TCN5 953 aa9.96□□□□□ -0.81
COPB1-202ENST00000439561 TACO1Q9BSH4 297 aaKnown RBP9.96□□□□□ -0.81
COPB1-202ENST00000439561 C6orf50Q9HD87 102 aa9.96□□□□□ -0.81
COPB1-202ENST00000439561 TSKSQ9UJT2 592 aa9.96□□□□□ -0.81
COPB1-202ENST00000439561 ATP8A1Q9Y2Q0 1164 aa9.96□□□□□ -0.81
COPB1-202ENST00000439561 NFAT5O94916 1531 aa9.96□□□□□ -0.82
COPB1-202ENST00000439561 RAD51CO43502 376 aa9.96□□□□□ -0.82
COPB1-202ENST00000439561 EIF6P56537 245 aaKnown RBP9.96□□□□□ -0.82
COPB1-202ENST00000439561 TRIM28Q13263 835 aaKnown RBP9.96□□□□□ -0.82
COPB1-202ENST00000439561 CCDC25Q86WR0 208 aa9.96□□□□□ -0.82
COPB1-202ENST00000439561 CASKIN2Q8WXE0 1202 aa9.96□□□□□ -0.82
COPB1-202ENST00000439561 ACSBG1Q96GR2 724 aa9.96□□□□□ -0.82
COPB1-202ENST00000439561 RAB34Q9BZG1 259 aa9.96□□□□□ -0.82
COPB1-202ENST00000439561 SLC40A1Q9NP59 571 aa9.96□□□□□ -0.82
COPB1-202ENST00000439561 GRIN2DO15399 1336 aa9.96□□□□□ -0.82
COPB1-202ENST00000439561 ZNF233A6NK53 670 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 PHF20L1A8MW92 1017 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 HMGB1P1B2RPK0 211 aaPredicted RBP9.95□□□□□ -0.82
COPB1-202ENST00000439561 NKRFO15226 690 aaKnown RBP eCLIP9.95□□□□□ -0.82
COPB1-202ENST00000439561 SHOX2O60902 331 aaPredicted RBP9.95□□□□□ -0.82
COPB1-202ENST00000439561 CPP00450 1065 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 PDHBP11177 359 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 KLRC1P26715 233 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 GNAQP50148 359 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 MAGOHP61326 146 aaKnown RBP9.95□□□□□ -0.82
COPB1-202ENST00000439561 MEA1Q16626 185 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 RIC1Q4ADV7 1423 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 PEX26Q7Z412 305 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 UBR1Q8IWV7 1749 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 MGARPQ8TDB4 240 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 MAGOHBQ96A72 148 aaKnown RBP9.95□□□□□ -0.82
COPB1-202ENST00000439561 CYFIP2Q96F07 1278 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 TLR10Q9BXR5 811 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 PLAGL2Q9UPG8 496 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 PNPLA7Q6ZV29 1317 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 GMNCA6NCL1 334 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 CTNND1O60716 968 aaKnown RBP9.95□□□□□ -0.82
COPB1-202ENST00000439561 SCP2P22307 547 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 PEX19P40855 299 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 DHX9Q08211 1270 aaKnown RBP9.95□□□□□ -0.82
COPB1-202ENST00000439561 KCNB1Q14721 858 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 CALCRLQ16602 461 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 FAM133BQ5BKY9 247 aaKnown RBP9.95□□□□□ -0.82
COPB1-202ENST00000439561 HERC4Q5GLZ8 1057 aaPredicted RBP9.95□□□□□ -0.82
COPB1-202ENST00000439561 AEBP2Q6ZN18 517 aaPredicted RBP9.95□□□□□ -0.82
COPB1-202ENST00000439561 KSR1Q8IVT5 923 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 ANKS4BQ8N8V4 417 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 PLA2G12BQ9BX93 195 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 AFDNP55196 1824 aaKnown RBP9.95□□□□□ -0.82
COPB1-202ENST00000439561 A0A1B0GUA9 196 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 POTEMA6NI47 508 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 TMEM110-MUSTN1A8MSY1 372 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 KLRF2D3W0D1 207 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 ABCB4P21439 1286 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 FECHP22830 423 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 NAALADL2Q58DX5 795 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 VGLL2Q8N8G2 317 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 SLC44A5Q8NCS7 719 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 TBCKQ8TEA7 893 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 WHAMMQ8TF30 809 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 ZNF512BQ96KM6 892 aaPredicted RBP9.95□□□□□ -0.82
COPB1-202ENST00000439561 CEP83Q9Y592 693 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 CD2APQ9Y5K6 639 aa9.95□□□□□ -0.82
COPB1-202ENST00000439561 MST1RQ04912 1400 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 EIF4E1BA6NMX2 242 aaKnown RBP9.94□□□□□ -0.82
COPB1-202ENST00000439561 LLGL1Q15334 1064 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 NEK8Q86SG6 692 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 VPS36Q86VN1 386 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 PACSIN1Q9BY11 444 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 GGT7Q9UJ14 662 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 SALL4Q9UJQ4 1053 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 FBXL5Q9UKA1 691 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 GNA11P29992 359 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 ELF1P32519 619 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 SLCO1A2P46721 670 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 RCAN1P53805 252 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 FAM83BQ5T0W9 1011 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 KLHDC7AQ5VTJ3 777 aa9.94□□□□□ -0.82
COPB1-202ENST00000439561 SAMD1Q6SPF0 538 aaPredicted RBP9.94□□□□□ -0.82
COPB1-202ENST00000439561 MYOCDQ8IZQ8 938 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms