RNA–Protein interactions for RNA: ENST00000439475.1

MCF2L-216, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-216ENST00000439475 XRRA1Q6P2D8 792 aa12.04□□□□□ -0.48
MCF2L-216ENST00000439475 CPLX2Q6PUV4 134 aaKnown RBP12.04□□□□□ -0.48
MCF2L-216ENST00000439475 ANKRD33Q7Z3H0 272 aa12.04□□□□□ -0.48
MCF2L-216ENST00000439475 HEATR3Q7Z4Q2 680 aa12.04□□□□□ -0.48
MCF2L-216ENST00000439475 NLRX1Q86UT6 975 aa12.04□□□□□ -0.48
MCF2L-216ENST00000439475 GDF15Q99988 308 aa12.04□□□□□ -0.48
MCF2L-216ENST00000439475 MTG1Q9BT17 334 aaPredicted RBP12.04□□□□□ -0.48
MCF2L-216ENST00000439475 AGXT2Q9BYV1 514 aa12.04□□□□□ -0.48
MCF2L-216ENST00000439475 UBE2OQ9C0C9 1292 aaKnown RBP12.04□□□□□ -0.48
MCF2L-216ENST00000439475 DDX41Q9UJV9 622 aaKnown RBP12.04□□□□□ -0.48
MCF2L-216ENST00000439475 hCG_1642624A0A1W2PR95 340 aa12.03□□□□□ -0.48
MCF2L-216ENST00000439475 A6NJR5 290 aa12.03□□□□□ -0.48
MCF2L-216ENST00000439475 RAG1P15918 1043 aa12.03□□□□□ -0.48
MCF2L-216ENST00000439475 ADD1P35611 737 aaKnown RBP12.03□□□□□ -0.48
MCF2L-216ENST00000439475 MAGEA10P43363 369 aaPredicted RBP12.03□□□□□ -0.48
MCF2L-216ENST00000439475 CDK7P50613 346 aa12.03□□□□□ -0.48
MCF2L-216ENST00000439475 NAPAP54920 295 aa12.03□□□□□ -0.48
MCF2L-216ENST00000439475 ANAPC15P60006 121 aa12.03□□□□□ -0.48
MCF2L-216ENST00000439475 MDM2Q00987 491 aaPredicted RBP12.03□□□□□ -0.48
MCF2L-216ENST00000439475 ITGA7Q13683 1181 aa12.03□□□□□ -0.48
MCF2L-216ENST00000439475 LY6KQ17RY6 165 aa12.03□□□□□ -0.48
MCF2L-216ENST00000439475 TMEM63BQ5T3F8 832 aa12.03□□□□□ -0.48
MCF2L-216ENST00000439475 PPP1R18Q6NYC8 613 aa12.03□□□□□ -0.48
MCF2L-216ENST00000439475 CCDC62Q6P9F0 684 aa12.03□□□□□ -0.48
MCF2L-216ENST00000439475 DHX37Q8IY37 1157 aaKnown RBP12.03□□□□□ -0.48
MCF2L-216ENST00000439475 CCDC12Q8WUD4 166 aaPredicted RBP12.03□□□□□ -0.48
MCF2L-216ENST00000439475 PDRG1Q9NUG6 133 aa12.03□□□□□ -0.48
MCF2L-216ENST00000439475 CNTNAP5Q8WYK1 1306 aa12.03□□□□□ -0.48
MCF2L-216ENST00000439475 KIAA1217Q5T5P2 1943 aa12.02□□□□□ -0.49
MCF2L-216ENST00000439475 MEIS2O14770 477 aa12.02□□□□□ -0.49
MCF2L-216ENST00000439475 FOSP01100 380 aaPredicted RBP12.02□□□□□ -0.49
MCF2L-216ENST00000439475 SUPT20HL2P0C7V6 817 aa12.02□□□□□ -0.49
MCF2L-216ENST00000439475 CDC27P30260 824 aa12.02□□□□□ -0.49
MCF2L-216ENST00000439475 EVCP57679 992 aa12.02□□□□□ -0.49
MCF2L-216ENST00000439475 NEDD9Q14511 834 aa12.02□□□□□ -0.49
MCF2L-216ENST00000439475 MCTP2Q6DN12 878 aa12.02□□□□□ -0.49
MCF2L-216ENST00000439475 USP17L6PQ6QN14 398 aa12.02□□□□□ -0.49
MCF2L-216ENST00000439475 COPS5Q92905 334 aa12.02□□□□□ -0.49
MCF2L-216ENST00000439475 ZNF274Q96GC6 653 aaPredicted RBP12.02□□□□□ -0.49
MCF2L-216ENST00000439475 MLXIPQ9HAP2 919 aa12.02□□□□□ -0.49
MCF2L-216ENST00000439475 PDLIM7Q9NR12 457 aa12.02□□□□□ -0.49
MCF2L-216ENST00000439475 LRRC37A2A6NM11 1700 aa12.01□□□□□ -0.49
MCF2L-216ENST00000439475 SMCO2A6NFE2 343 aa12.01□□□□□ -0.49
MCF2L-216ENST00000439475 CPLX1O14810 134 aa12.01□□□□□ -0.49
MCF2L-216ENST00000439475 KIAA0355O15063 1070 aa12.01□□□□□ -0.49
MCF2L-216ENST00000439475 PRPF3O43395 683 aaKnown RBP12.01□□□□□ -0.49
MCF2L-216ENST00000439475 ARIH2O95376 493 aa12.01□□□□□ -0.49
MCF2L-216ENST00000439475 PDIA3P30101 505 aaKnown RBP12.01□□□□□ -0.49
MCF2L-216ENST00000439475 CCT2P78371 535 aaKnown RBP12.01□□□□□ -0.49
MCF2L-216ENST00000439475 PURAQ00577 322 aaKnown RBP12.01□□□□□ -0.49
MCF2L-216ENST00000439475 PTPN11Q06124 597 aaPredicted RBP12.01□□□□□ -0.49
MCF2L-216ENST00000439475 FAAP100Q0VG06 881 aa12.01□□□□□ -0.49
MCF2L-216ENST00000439475 ANKRD1Q15327 319 aa12.01□□□□□ -0.49
MCF2L-216ENST00000439475 DGKDQ16760 1214 aa12.01□□□□□ -0.49
MCF2L-216ENST00000439475 PFKFB3Q16875 520 aaPredicted RBP12.01□□□□□ -0.49
MCF2L-216ENST00000439475 PCNX4Q63HM2 1172 aa12.01□□□□□ -0.49
MCF2L-216ENST00000439475 TRIM22Q8IYM9 498 aa12.01□□□□□ -0.49
MCF2L-216ENST00000439475 GIMAP8Q8ND71 665 aaPredicted RBP12.01□□□□□ -0.49
MCF2L-216ENST00000439475 AFG1LQ8WV93 481 aa12.01□□□□□ -0.49
MCF2L-216ENST00000439475 EMID1Q96A84 441 aaPredicted RBP12.01□□□□□ -0.49
MCF2L-216ENST00000439475 CDHR1Q96JP9 859 aa12.01□□□□□ -0.49
MCF2L-216ENST00000439475 KATNAL1Q9BW62 490 aa12.01□□□□□ -0.49
MCF2L-216ENST00000439475 RNF26Q9BY78 433 aaPredicted RBP12.01□□□□□ -0.49
MCF2L-216ENST00000439475 PRO3102Q9H379 93 aa12.01□□□□□ -0.49
MCF2L-216ENST00000439475 FAM217BQ9NTX9 383 aaPredicted RBP12.01□□□□□ -0.49
MCF2L-216ENST00000439475 BARHL2Q9NY43 387 aa12.01□□□□□ -0.49
MCF2L-216ENST00000439475 RTEL1Q9NZ71 1219 aa12.01□□□□□ -0.49
MCF2L-216ENST00000439475 PCDHA6Q9UN73 950 aa12.01□□□□□ -0.49
MCF2L-216ENST00000439475 PCDHA8Q9Y5H6 950 aa12.01□□□□□ -0.49
MCF2L-216ENST00000439475 MYH7BA7E2Y1 1941 aa12.01□□□□□ -0.49
MCF2L-216ENST00000439475 MAFGO15525 162 aa12□□□□□ -0.49
MCF2L-216ENST00000439475 FIBPO43427 364 aa12□□□□□ -0.49
MCF2L-216ENST00000439475 PPFIA4O75335 1185 aa12□□□□□ -0.49
MCF2L-216ENST00000439475 SCG2P13521 617 aa12□□□□□ -0.49
MCF2L-216ENST00000439475 PTGS1P23219 599 aa12□□□□□ -0.49
MCF2L-216ENST00000439475 GNA11P29992 359 aa12□□□□□ -0.49
MCF2L-216ENST00000439475 ICAM3P32942 547 aa12□□□□□ -0.49
MCF2L-216ENST00000439475 ADCY7P51828 1080 aa12□□□□□ -0.49
MCF2L-216ENST00000439475 FUT2Q10981 343 aa12□□□□□ -0.49
MCF2L-216ENST00000439475 FAM47CQ5HY64 1035 aa12□□□□□ -0.49
MCF2L-216ENST00000439475 CELF3Q5SZQ8 465 aaKnown RBP12□□□□□ -0.49
MCF2L-216ENST00000439475 WWC2Q6AWC2 1192 aa12□□□□□ -0.49
MCF2L-216ENST00000439475 FAM126BQ8IXS8 530 aa12□□□□□ -0.49
MCF2L-216ENST00000439475 TDHQ8IZJ6 230 aa12□□□□□ -0.49
MCF2L-216ENST00000439475 SLC43A3Q8NBI5 491 aa12□□□□□ -0.49
MCF2L-216ENST00000439475 GPKOWQ92917 476 aaPredicted RBP eCLIP12□□□□□ -0.49
MCF2L-216ENST00000439475 BADQ92934 168 aa12□□□□□ -0.49
MCF2L-216ENST00000439475 UPF3BQ9BZI7 483 aaKnown RBP12□□□□□ -0.49
MCF2L-216ENST00000439475 C6orf50Q9HD87 102 aa12□□□□□ -0.49
MCF2L-216ENST00000439475 RIC8AQ9NPQ8 531 aa12□□□□□ -0.49
MCF2L-216ENST00000439475 FRMPD4Q14CM0 1322 aa12□□□□□ -0.49
MCF2L-216ENST00000439475 BRCA2P51587 3418 aa11.99□□□□□ -0.49
MCF2L-216ENST00000439475 TRIM43BA6NCK2 446 aa11.99□□□□□ -0.49
MCF2L-216ENST00000439475 STXBP3O00186 592 aa11.99□□□□□ -0.49
MCF2L-216ENST00000439475 NOP56O00567 594 aaKnown RBP11.99□□□□□ -0.49
MCF2L-216ENST00000439475 GGPS1O95749 300 aa11.99□□□□□ -0.49
MCF2L-216ENST00000439475 TIMP1P01033 207 aa11.99□□□□□ -0.49
MCF2L-216ENST00000439475 MMP3P08254 477 aa11.99□□□□□ -0.49
MCF2L-216ENST00000439475 IFNAR1P17181 557 aa11.99□□□□□ -0.49
MCF2L-216ENST00000439475 PSMC6P62333 389 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms