RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 VPS54Q9P1Q0 977 aa9.51□□□□□ -0.89
HPS4-206ENST00000439453 CAPN11Q9UMQ6 739 aa9.51□□□□□ -0.89
HPS4-206ENST00000439453 SCAF8Q9UPN6 1271 aaKnown RBP9.51□□□□□ -0.89
HPS4-206ENST00000439453 ZNF532Q9HCE3 1301 aa9.51□□□□□ -0.89
HPS4-206ENST00000439453 SPDYE2BA6NHP3 402 aa9.51□□□□□ -0.89
HPS4-206ENST00000439453 F8W031 263 aaPredicted RBP9.51□□□□□ -0.89
HPS4-206ENST00000439453 H7C1D1 291 aa9.51□□□□□ -0.89
HPS4-206ENST00000439453 IDH1O75874 414 aaKnown RBP9.51□□□□□ -0.89
HPS4-206ENST00000439453 SPDYE6P0CI01 402 aa9.51□□□□□ -0.89
HPS4-206ENST00000439453 PDCLQ13371 301 aa9.51□□□□□ -0.89
HPS4-206ENST00000439453 UBE3CQ15386 1083 aa9.51□□□□□ -0.89
HPS4-206ENST00000439453 SPATS2Q86XZ4 545 aaKnown RBP9.51□□□□□ -0.89
HPS4-206ENST00000439453 SPATA5Q8NB90 893 aa9.51□□□□□ -0.89
HPS4-206ENST00000439453 HDAC7Q8WUI4 952 aa9.51□□□□□ -0.89
HPS4-206ENST00000439453 RUBCNQ92622 972 aa9.51□□□□□ -0.89
HPS4-206ENST00000439453 PRMT6Q96LA8 375 aaPredicted RBP9.51□□□□□ -0.89
HPS4-206ENST00000439453 PIH1D3Q9NQM4 214 aaKnown RBP9.51□□□□□ -0.89
HPS4-206ENST00000439453 MEFVO15553 781 aaPredicted RBP9.51□□□□□ -0.89
HPS4-206ENST00000439453 PARP1P09874 1014 aaKnown RBP9.51□□□□□ -0.89
HPS4-206ENST00000439453 CYLC1P35663 651 aaPredicted RBP9.51□□□□□ -0.89
HPS4-206ENST00000439453 ALS2CLQ60I27 953 aa9.51□□□□□ -0.89
HPS4-206ENST00000439453 RUFY1Q96T51 708 aa9.51□□□□□ -0.89
HPS4-206ENST00000439453 JPH2Q9BR39 696 aaPredicted RBP9.51□□□□□ -0.89
HPS4-206ENST00000439453 LRRC1Q9BTT6 524 aa9.51□□□□□ -0.89
HPS4-206ENST00000439453 GLIS2Q9BZE0 524 aaPredicted RBP9.51□□□□□ -0.89
HPS4-206ENST00000439453 GGA3Q9NZ52 723 aa9.51□□□□□ -0.89
HPS4-206ENST00000439453 DMGDHQ9UI17 866 aaKnown RBP9.51□□□□□ -0.89
HPS4-206ENST00000439453 SERPINA10Q9UK55 444 aa9.51□□□□□ -0.89
HPS4-206ENST00000439453 TACC3Q9Y6A5 838 aa9.51□□□□□ -0.89
HPS4-206ENST00000439453 CNTNAP1P78357 1384 aa9.51□□□□□ -0.89
HPS4-206ENST00000439453 GAKO14976 1311 aa9.51□□□□□ -0.89
HPS4-206ENST00000439453 PITPNM2Q9BZ72 1349 aa9.51□□□□□ -0.89
HPS4-206ENST00000439453 A0A1W2PQC6 194 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 LGALS16A8MUM7 142 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 ALX1Q15699 326 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 EARS2Q5JPH6 523 aaKnown RBP9.5□□□□□ -0.89
HPS4-206ENST00000439453 CST9Q5W186 159 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 APOBEC3HQ6NTF7 200 aaKnown RBP9.5□□□□□ -0.89
HPS4-206ENST00000439453 TSEN2Q8NCE0 465 aaKnown RBP9.5□□□□□ -0.89
HPS4-206ENST00000439453 TBC1D22AQ8WUA7 517 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 STRBPQ96SI9 672 aaKnown RBP9.5□□□□□ -0.89
HPS4-206ENST00000439453 SUFUQ9UMX1 484 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 SUGT1Q9Y2Z0 365 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 MACROD2A1Z1Q3 448 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 ADM5C9JUS6 153 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 PES1O00541 588 aaKnown RBP9.5□□□□□ -0.89
HPS4-206ENST00000439453 GTPBP6O43824 516 aaPredicted RBP9.5□□□□□ -0.89
HPS4-206ENST00000439453 KIF1CO43896 1103 aaKnown RBP9.5□□□□□ -0.89
HPS4-206ENST00000439453 HSF2BPO75031 334 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 WTAPQ15007 396 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 ZNF658Q5TYW1 1059 aaPredicted RBP9.5□□□□□ -0.89
HPS4-206ENST00000439453 IRF2BP1Q8IU81 584 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 CREG2Q8IUH2 290 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 PURBQ96QR8 312 aaKnown RBP9.5□□□□□ -0.89
HPS4-206ENST00000439453 ZKSCAN3Q9BRR0 538 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 MRIQ9BWK5 157 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 DUSP10Q9Y6W6 482 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 MYH6P13533 1939 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 IPO7O95373 1038 aaKnown RBP9.5□□□□□ -0.89
HPS4-206ENST00000439453 BMP15O95972 392 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 CRKP46108 304 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 EPHB4P54760 987 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 MEA1Q16626 185 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 RBM26Q5T8P6 1007 aaKnown RBP9.5□□□□□ -0.89
HPS4-206ENST00000439453 ANGEL2Q5VTE6 544 aaKnown RBP9.5□□□□□ -0.89
HPS4-206ENST00000439453 WDR66Q8TBY9 1149 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 ZNF507Q8TCN5 953 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 KRT23Q9C075 422 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 CNNM2Q9H8M5 875 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 MAPK8IP1Q9UQF2 711 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 BAZ2AQ9UIF9 1905 aaKnown RBP9.5□□□□□ -0.89
HPS4-206ENST00000439453 WNT7AO00755 349 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 PDE6AP16499 860 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 PPARAQ07869 468 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 DIXDC1Q155Q3 683 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 ZNF174Q15697 407 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 RRP12Q5JTH9 1297 aaKnown RBP9.5□□□□□ -0.89
HPS4-206ENST00000439453 EMBQ6PCB8 327 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 ADGRA1Q86SQ6 560 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 IFNL3Q8IZI9 196 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 NUP133Q8WUM0 1156 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 SHISA4Q96DD7 197 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 ZDHHC15Q96MV8 337 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 NAPBQ9H115 298 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 NHEJ1Q9H9Q4 299 aaPredicted RBP9.5□□□□□ -0.89
HPS4-206ENST00000439453 EPB41L4AQ9HCS5 686 aaPredicted RBP9.5□□□□□ -0.89
HPS4-206ENST00000439453 SNX12Q9UMY4 172 aa9.5□□□□□ -0.89
HPS4-206ENST00000439453 KRT2P35908 639 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 PRCPP42785 496 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 MRPS25P82663 173 aaKnown RBP9.49□□□□□ -0.89
HPS4-206ENST00000439453 HTRA3P83110 453 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 HDLBPQ00341 1268 aaKnown RBP9.49□□□□□ -0.89
HPS4-206ENST00000439453 SLC7A5Q01650 507 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 ITIH3Q06033 890 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 AKNAD1Q5T1N1 836 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 PDXDC2PQ6P474 469 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 MICALCLQ6ZW33 695 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 ZNF572Q7Z3I7 529 aaPredicted RBP9.49□□□□□ -0.89
HPS4-206ENST00000439453 FANCBQ8NB91 859 aa9.49□□□□□ -0.89
HPS4-206ENST00000439453 BANK1Q8NDB2 785 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms