RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 LARGE1O95461 756 aa21.42■■□□□ 1.02
SHH-203ENST00000435425 RBM25P49756 843 aaKnown RBP21.42■■□□□ 1.02
SHH-203ENST00000435425 TTLL4Q14679 1199 aa21.42■■□□□ 1.02
SHH-203ENST00000435425 ME3Q16798 604 aa21.42■■□□□ 1.02
SHH-203ENST00000435425 VSIG10LQ86VR7 867 aa21.42■■□□□ 1.02
SHH-203ENST00000435425 OR6J1Q8NGC5 347 aa21.42■■□□□ 1.02
SHH-203ENST00000435425 RIC8AQ9NPQ8 531 aa21.42■■□□□ 1.02
SHH-203ENST00000435425 RTEL1Q9NZ71 1219 aa21.42■■□□□ 1.02
SHH-203ENST00000435425 PCDHA6Q9UN73 950 aa21.42■■□□□ 1.02
SHH-203ENST00000435425 PCDHA8Q9Y5H6 950 aa21.42■■□□□ 1.02
SHH-203ENST00000435425 EVI5O60447 810 aa21.41■■□□□ 1.02
SHH-203ENST00000435425 ACLYP53396 1101 aa21.41■■□□□ 1.02
SHH-203ENST00000435425 LY6KQ17RY6 165 aa21.41■■□□□ 1.02
SHH-203ENST00000435425 PGBD1Q96JS3 809 aa21.41■■□□□ 1.02
SHH-203ENST00000435425 TMEM260Q9NX78 707 aa21.41■■□□□ 1.02
SHH-203ENST00000435425 PHF24Q9UPV7 400 aa21.41■■□□□ 1.02
SHH-203ENST00000435425 MRVI1Q9Y6F6 885 aa21.41■■□□□ 1.02
SHH-203ENST00000435425 FSCN1Q16658 493 aaKnown RBP21.4■■□□□ 1.02
SHH-203ENST00000435425 LRRC26Q2I0M4 334 aa21.4■■□□□ 1.02
SHH-203ENST00000435425 C7orf61Q8IZ16 206 aa21.4■■□□□ 1.02
SHH-203ENST00000435425 PCSK9Q8NBP7 692 aaKnown RBP21.4■■□□□ 1.02
SHH-203ENST00000435425 CCDC12Q8WUD4 166 aaPredicted RBP21.4■■□□□ 1.02
SHH-203ENST00000435425 VTI1AQ96AJ9 217 aa21.4■■□□□ 1.02
SHH-203ENST00000435425 TSEN34Q9BSV6 310 aaKnown RBP21.4■■□□□ 1.02
SHH-203ENST00000435425 VPS54Q9P1Q0 977 aa21.4■■□□□ 1.02
SHH-203ENST00000435425 Q9Y3F1 56 aa21.4■■□□□ 1.02
SHH-203ENST00000435425 FRMPD4Q14CM0 1322 aa21.39■■□□□ 1.01
SHH-203ENST00000435425 A0A1W2PQ45 241 aaPredicted RBP21.39■■□□□ 1.01
SHH-203ENST00000435425 A0A1W2PQY0 241 aa21.39■■□□□ 1.01
SHH-203ENST00000435425 NKRFO15226 690 aaKnown RBP eCLIP21.39■■□□□ 1.011e-6■■■□□ 15.6
SHH-203ENST00000435425 CTAGE5O15320 804 aa21.39■■□□□ 1.01
SHH-203ENST00000435425 SORBS3O60504 671 aa21.39■■□□□ 1.01
SHH-203ENST00000435425 CDKL5O76039 1030 aa21.39■■□□□ 1.01
SHH-203ENST00000435425 ASGR1P07306 291 aa21.39■■□□□ 1.01
SHH-203ENST00000435425 CST5P28325 142 aaPredicted RBP21.39■■□□□ 1.01
SHH-203ENST00000435425 MRPS9P82933 396 aaKnown RBP21.39■■□□□ 1.01
SHH-203ENST00000435425 CCSAPQ6IQ19 270 aaPredicted RBP21.39■■□□□ 1.01
SHH-203ENST00000435425 CCDC62Q6P9F0 684 aa21.39■■□□□ 1.01
SHH-203ENST00000435425 SLC39A5Q6ZMH5 540 aa21.39■■□□□ 1.01
SHH-203ENST00000435425 C6orf50Q9HD87 102 aa21.39■■□□□ 1.01
SHH-203ENST00000435425 RGS20O76081 388 aa21.38■■□□□ 1.01
SHH-203ENST00000435425 DEXIO95424 95 aa21.38■■□□□ 1.01
SHH-203ENST00000435425 JAKMIP3Q5VZ66 844 aa21.38■■□□□ 1.01
SHH-203ENST00000435425 PCNX4Q63HM2 1172 aa21.38■■□□□ 1.01
SHH-203ENST00000435425 AIFM3Q96NN9 605 aa21.38■■□□□ 1.01
SHH-203ENST00000435425 GLT8D2Q9H1C3 349 aa21.38■■□□□ 1.01
SHH-203ENST00000435425 EHMT1Q9H9B1 1298 aa21.38■■□□□ 1.01
SHH-203ENST00000435425 DDX41Q9UJV9 622 aaKnown RBP21.38■■□□□ 1.01
SHH-203ENST00000435425 MOXD2PA6NHM9 499 aa21.37■■□□□ 1.01
SHH-203ENST00000435425 ADAMTS3O15072 1205 aa21.37■■□□□ 1.01
SHH-203ENST00000435425 ZEB2O60315 1214 aa21.37■■□□□ 1.01
SHH-203ENST00000435425 GH1P01241 217 aa21.37■■□□□ 1.01
SHH-203ENST00000435425 NLRP5P59047 1200 aa21.37■■□□□ 1.01
SHH-203ENST00000435425 CCDC148Q8NFR7 591 aa21.37■■□□□ 1.01
SHH-203ENST00000435425 GTF3C6Q969F1 213 aa21.37■■□□□ 1.01
SHH-203ENST00000435425 ANO3Q9BYT9 981 aa21.37■■□□□ 1.01
SHH-203ENST00000435425 ZMYND12Q9H0C1 365 aa21.37■■□□□ 1.01
SHH-203ENST00000435425 STARD7Q9NQZ5 370 aa21.37■■□□□ 1.01
SHH-203ENST00000435425 LIMCH1Q9UPQ0 1083 aa21.37■■□□□ 1.01
SHH-203ENST00000435425 ATP11BQ9Y2G3 1177 aa21.37■■□□□ 1.01
SHH-203ENST00000435425 DOCK5Q9H7D0 1870 aa21.37■■□□□ 1.01
SHH-203ENST00000435425 MKI67P46013 3256 aaKnown RBP21.36■■□□□ 1.01
SHH-203ENST00000435425 CTDNEP1O95476 244 aa21.36■■□□□ 1.01
SHH-203ENST00000435425 FOSP01100 380 aaPredicted RBP21.36■■□□□ 1.01
SHH-203ENST00000435425 MYL3P08590 195 aa21.36■■□□□ 1.01
SHH-203ENST00000435425 RTP1P59025 263 aa21.36■■□□□ 1.01
SHH-203ENST00000435425 NKX3-2P78367 333 aa21.36■■□□□ 1.01
SHH-203ENST00000435425 RABEP1Q15276 862 aa21.36■■□□□ 1.01
SHH-203ENST00000435425 GNPTABQ3T906 1256 aa21.36■■□□□ 1.01
SHH-203ENST00000435425 CXCL17Q6UXB2 119 aa21.36■■□□□ 1.01
SHH-203ENST00000435425 GLT1D1Q96MS3 346 aa21.36■■□□□ 1.01
SHH-203ENST00000435425 BACH2Q9BYV9 841 aa21.36■■□□□ 1.01
SHH-203ENST00000435425 NR2E3Q9Y5X4 410 aa21.36■■□□□ 1.01
SHH-203ENST00000435425 ESYT2A0FGR8 921 aa21.35■■□□□ 1.01
SHH-203ENST00000435425 STAM2O75886 525 aa21.35■■□□□ 1.01
SHH-203ENST00000435425 GNA11P29992 359 aa21.35■■□□□ 1.01
SHH-203ENST00000435425 CLK2P49760 499 aaKnown RBP21.35■■□□□ 1.01
SHH-203ENST00000435425 CPT1AP50416 773 aa21.35■■□□□ 1.01
SHH-203ENST00000435425 XRRA1Q6P2D8 792 aa21.35■■□□□ 1.01
SHH-203ENST00000435425 KCNV1Q6PIU1 500 aa21.35■■□□□ 1.01
SHH-203ENST00000435425 DHX37Q8IY37 1157 aaKnown RBP21.35■■□□□ 1.01
SHH-203ENST00000435425 RASGRP4Q8TDF6 673 aa21.35■■□□□ 1.01
SHH-203ENST00000435425 TBC1D32Q96NH3 1257 aa21.35■■□□□ 1.01
SHH-203ENST00000435425 SH3GLB2Q9NR46 395 aa21.35■■□□□ 1.01
SHH-203ENST00000435425 ORC3Q9UBD5 711 aaPredicted RBP21.35■■□□□ 1.01
SHH-203ENST00000435425 PDE4DIPQ5VU43 2346 aa21.35■■□□□ 1.01
SHH-203ENST00000435425 H0YGN5 161 aa21.34■■□□□ 1.01
SHH-203ENST00000435425 SP2Q02086 613 aa21.34■■□□□ 1.01
SHH-203ENST00000435425 ARHGAP1Q07960 439 aa21.34■■□□□ 1.01
SHH-203ENST00000435425 AP3B2Q13367 1082 aa21.34■■□□□ 1.01
SHH-203ENST00000435425 TRIM60Q495X7 471 aa21.34■■□□□ 1.01
SHH-203ENST00000435425 BRDTQ58F21 947 aaPredicted RBP21.34■■□□□ 1.01
SHH-203ENST00000435425 NLRX1Q86UT6 975 aa21.34■■□□□ 1.01
SHH-203ENST00000435425 REXO1Q8N1G1 1221 aaKnown RBP21.34■■□□□ 1.01
SHH-203ENST00000435425 AFG1LQ8WV93 481 aa21.34■■□□□ 1.01
SHH-203ENST00000435425 INPP4AQ96PE3 977 aaPredicted RBP21.34■■□□□ 1.01
SHH-203ENST00000435425 ZMYND8Q9ULU4 1186 aaPredicted RBP21.34■■□□□ 1.01
SHH-203ENST00000435425 GGPS1O95749 300 aa21.33■■□□□ 1.01
SHH-203ENST00000435425 SYN1P17600 705 aa21.33■■□□□ 1.01
SHH-203ENST00000435425 CCDC83Q8IWF9 413 aa21.33■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms