RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 PMF1-BGLAPU3KQ54 211 aa5.29□□□□□ -1.56
CLK1-204ENST00000432425 LCP1P13796 627 aa5.28□□□□□ -1.56
CLK1-204ENST00000432425 MC3RP41968 323 aa5.28□□□□□ -1.56
CLK1-204ENST00000432425 LSAMPQ13449 338 aa5.28□□□□□ -1.56
CLK1-204ENST00000432425 VMACQ2NL98 169 aa5.28□□□□□ -1.56
CLK1-204ENST00000432425 NBPF6Q5VWK0 638 aa5.28□□□□□ -1.56
CLK1-204ENST00000432425 NLRP10Q86W26 655 aa5.28□□□□□ -1.56
CLK1-204ENST00000432425 NBPF4Q96M43 638 aa5.28□□□□□ -1.56
CLK1-204ENST00000432425 HIRIP3Q9BW71 556 aaPredicted RBP5.28□□□□□ -1.56
CLK1-204ENST00000432425 ZCCHC4Q9H5U6 513 aa5.28□□□□□ -1.56
CLK1-204ENST00000432425 X6R8D5 127 aa5.28□□□□□ -1.56
CLK1-204ENST00000432425 TRAV20A0A0B4J274 112 aa5.28□□□□□ -1.56
CLK1-204ENST00000432425 H7BY64 318 aa5.28□□□□□ -1.56
CLK1-204ENST00000432425 ARNTLO00327 626 aa5.28□□□□□ -1.56
CLK1-204ENST00000432425 PRODHO43272 600 aa5.28□□□□□ -1.56
CLK1-204ENST00000432425 CAPNS1P04632 268 aa5.28□□□□□ -1.56
CLK1-204ENST00000432425 INHBBP09529 407 aa5.28□□□□□ -1.56
CLK1-204ENST00000432425 SLC6A11P48066 632 aa5.28□□□□□ -1.56
CLK1-204ENST00000432425 CACNB2Q08289 660 aaPredicted RBP5.28□□□□□ -1.56
CLK1-204ENST00000432425 CHRNA2Q15822 529 aa5.28□□□□□ -1.56
CLK1-204ENST00000432425 DENND5AQ6IQ26 1287 aa5.28□□□□□ -1.56
CLK1-204ENST00000432425 USP53Q70EK8 1073 aa5.28□□□□□ -1.56
CLK1-204ENST00000432425 B3GNT8Q7Z7M8 397 aa5.28□□□□□ -1.56
CLK1-204ENST00000432425 Q8N1Y9 231 aa5.28□□□□□ -1.56
CLK1-204ENST00000432425 CPA5Q8WXQ8 436 aa5.28□□□□□ -1.56
CLK1-204ENST00000432425 ZNF669Q96BR6 464 aaPredicted RBP5.28□□□□□ -1.56
CLK1-204ENST00000432425 CLDND1Q9NY35 253 aa5.28□□□□□ -1.56
CLK1-204ENST00000432425 CCDC85CA6NKD9 419 aa5.27□□□□□ -1.57
CLK1-204ENST00000432425 PDPK1O15530 556 aa5.27□□□□□ -1.57
CLK1-204ENST00000432425 DLX3O60479 287 aa5.27□□□□□ -1.57
CLK1-204ENST00000432425 FGFR1P11362 822 aa5.27□□□□□ -1.57
CLK1-204ENST00000432425 CAP1Q01518 475 aa5.27□□□□□ -1.57
CLK1-204ENST00000432425 LINC01356Q8N9X3 169 aa5.27□□□□□ -1.57
CLK1-204ENST00000432425 SMARCC2Q8TAQ2 1214 aa5.27□□□□□ -1.57
CLK1-204ENST00000432425 ARHGEF4Q9NR80 690 aa5.27□□□□□ -1.57
CLK1-204ENST00000432425 SIRPGQ9P1W8 387 aa5.27□□□□□ -1.57
CLK1-204ENST00000432425 FBXL7Q9UJT9 491 aa5.27□□□□□ -1.57
CLK1-204ENST00000432425 PALD1Q9ULE6 856 aa5.27□□□□□ -1.57
CLK1-204ENST00000432425 MSRB2Q9Y3D2 182 aa5.27□□□□□ -1.57
CLK1-204ENST00000432425 NPFFR2Q9Y5X5 522 aa5.27□□□□□ -1.57
CLK1-204ENST00000432425 SGSM2O43147 1006 aa5.26□□□□□ -1.57
CLK1-204ENST00000432425 TRIM13O60858 407 aa5.26□□□□□ -1.57
CLK1-204ENST00000432425 SASH1O94885 1247 aa5.26□□□□□ -1.57
CLK1-204ENST00000432425 RASGRF1Q13972 1273 aa5.26□□□□□ -1.57
CLK1-204ENST00000432425 MTERF2Q49AM1 385 aa5.26□□□□□ -1.57
CLK1-204ENST00000432425 NSMFQ6X4W1 530 aa5.26□□□□□ -1.57
CLK1-204ENST00000432425 ETV3LQ6ZN32 361 aa5.26□□□□□ -1.57
CLK1-204ENST00000432425 TTLL10Q6ZVT0 673 aa5.26□□□□□ -1.57
CLK1-204ENST00000432425 MILR1Q7Z6M3 343 aa5.26□□□□□ -1.57
CLK1-204ENST00000432425 SP8Q8IXZ3 490 aa5.26□□□□□ -1.57
CLK1-204ENST00000432425 MARCH10Q8NA82 808 aaPredicted RBP5.26□□□□□ -1.57
CLK1-204ENST00000432425 ARMC5Q96C12 935 aa5.26□□□□□ -1.57
CLK1-204ENST00000432425 EPB41L1Q9H4G0 881 aa5.26□□□□□ -1.57
CLK1-204ENST00000432425 PARD6AQ9NPB6 346 aa5.26□□□□□ -1.57
CLK1-204ENST00000432425 GPR27Q9NS67 375 aa5.26□□□□□ -1.57
CLK1-204ENST00000432425 DGKIO75912 1065 aa5.25□□□□□ -1.57
CLK1-204ENST00000432425 PLA2G1BP04054 148 aaKnown RBP5.25□□□□□ -1.57
CLK1-204ENST00000432425 CYP2C8P10632 490 aa5.25□□□□□ -1.57
CLK1-204ENST00000432425 PABPC1P11940 636 aaKnown RBP5.25□□□□□ -1.57
CLK1-204ENST00000432425 IFRD2Q12894 506 aaPredicted RBP5.25□□□□□ -1.57
CLK1-204ENST00000432425 SF3A1Q15459 793 aaKnown RBP5.25□□□□□ -1.57
CLK1-204ENST00000432425 RSPO2Q6UXX9 243 aaPredicted RBP5.25□□□□□ -1.57
CLK1-204ENST00000432425 FNIP1Q8TF40 1166 aa5.25□□□□□ -1.57
CLK1-204ENST00000432425 DCAF4Q8WV16 495 aa5.25□□□□□ -1.57
CLK1-204ENST00000432425 DDX11Q96FC9 970 aa5.25□□□□□ -1.57
CLK1-204ENST00000432425 YIPF4Q9BSR8 244 aa5.25□□□□□ -1.57
CLK1-204ENST00000432425 PHF20Q9BVI0 1012 aa5.25□□□□□ -1.57
CLK1-204ENST00000432425 SPATA9Q9BWV2 254 aa5.25□□□□□ -1.57
CLK1-204ENST00000432425 CCDC113Q9H0I3 377 aa5.25□□□□□ -1.57
CLK1-204ENST00000432425 RAPGEFL1Q9UHV5 662 aa5.25□□□□□ -1.57
CLK1-204ENST00000432425 HGSO14964 777 aaPredicted RBP5.24□□□□□ -1.57
CLK1-204ENST00000432425 HTRA3P83110 453 aa5.24□□□□□ -1.57
CLK1-204ENST00000432425 SSRP1Q08945 709 aaKnown RBP5.24□□□□□ -1.57
CLK1-204ENST00000432425 STEAP3Q658P3 488 aa5.24□□□□□ -1.57
CLK1-204ENST00000432425 DPH6Q7L8W6 267 aa5.24□□□□□ -1.57
CLK1-204ENST00000432425 ZC3H18Q86VM9 953 aaKnown RBP5.24□□□□□ -1.57
CLK1-204ENST00000432425 KCNC2Q96PR1 638 aa5.24□□□□□ -1.57
CLK1-204ENST00000432425 PCDH18Q9HCL0 1135 aa5.24□□□□□ -1.57
CLK1-204ENST00000432425 ZNF652Q9Y2D9 606 aa5.24□□□□□ -1.57
CLK1-204ENST00000432425 FFAR3O14843 346 aa5.24□□□□□ -1.57
CLK1-204ENST00000432425 C8BP07358 591 aa5.24□□□□□ -1.57
CLK1-204ENST00000432425 CD300LDQ6UXZ3 194 aa5.24□□□□□ -1.57
CLK1-204ENST00000432425 SPATC1Q76KD6 591 aa5.24□□□□□ -1.57
CLK1-204ENST00000432425 SAPCD2Q86UD0 394 aa5.24□□□□□ -1.57
CLK1-204ENST00000432425 MIB1Q86YT6 1006 aa5.24□□□□□ -1.57
CLK1-204ENST00000432425 FAM126BQ8IXS8 530 aa5.24□□□□□ -1.57
CLK1-204ENST00000432425 OSBP2Q969R2 916 aa5.24□□□□□ -1.57
CLK1-204ENST00000432425 IPO9Q96P70 1041 aaKnown RBP5.24□□□□□ -1.57
CLK1-204ENST00000432425 CDC6Q99741 560 aa5.24□□□□□ -1.57
CLK1-204ENST00000432425 NGRNQ9NPE2 291 aaKnown RBP5.24□□□□□ -1.57
CLK1-204ENST00000432425 LUC7LQ9NQ29 371 aaKnown RBP5.24□□□□□ -1.57
CLK1-204ENST00000432425 PFDN2Q9UHV9 154 aa5.24□□□□□ -1.57
CLK1-204ENST00000432425 PCDHB4Q9Y5E5 795 aa5.24□□□□□ -1.57
CLK1-204ENST00000432425 MAFKO60675 156 aa5.23□□□□□ -1.57
CLK1-204ENST00000432425 HOXA5P20719 270 aa5.23□□□□□ -1.57
CLK1-204ENST00000432425 VWA3BQ502W6 1294 aa5.23□□□□□ -1.57
CLK1-204ENST00000432425 YOD1Q5VVQ6 348 aaPredicted RBP5.23□□□□□ -1.57
CLK1-204ENST00000432425 ZBTB8AQ96BR9 441 aa5.23□□□□□ -1.57
CLK1-204ENST00000432425 NOX5Q96PH1 765 aa5.23□□□□□ -1.57
CLK1-204ENST00000432425 ZFYVE21Q9BQ24 234 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms