RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 PANK1Q8TE04 598 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 BRF1Q92994 677 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 CHMP4CQ96CF2 233 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 WNK4Q96J92 1243 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 LGR4Q9BXB1 951 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 GPR27Q9NS67 375 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 GFOD1Q9NXC2 390 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 TPX2Q9ULW0 747 aaKnown RBP5.37□□□□□ -1.55
HMGB3-203ENST00000430118 AFF2P51816 1311 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 TMEM2Q9UHN6 1383 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 MBD5Q9P267 1494 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 TRBV23OR9-2A0A075B6M9 112 aa5.36□□□□□ -1.55
HMGB3-203ENST00000430118 IGF2BP3O00425 579 aaKnown RBP eCLIP5.36□□□□□ -1.55
HMGB3-203ENST00000430118 WNT9AO14904 365 aa5.36□□□□□ -1.55
HMGB3-203ENST00000430118 KPNA6O60684 536 aa5.36□□□□□ -1.55
HMGB3-203ENST00000430118 CRTAMO95727 393 aa5.36□□□□□ -1.55
HMGB3-203ENST00000430118 EOMESO95936 686 aa5.36□□□□□ -1.55
HMGB3-203ENST00000430118 NFICP08651 508 aa5.36□□□□□ -1.55
HMGB3-203ENST00000430118 ZNF865P0CJ78 1059 aaPredicted RBP5.36□□□□□ -1.55
HMGB3-203ENST00000430118 OCRLQ01968 901 aa5.36□□□□□ -1.55
HMGB3-203ENST00000430118 NMIQ13287 307 aaPredicted RBP5.36□□□□□ -1.55
HMGB3-203ENST00000430118 MTMR1Q13613 665 aa5.36□□□□□ -1.55
HMGB3-203ENST00000430118 PPP2R5DQ14738 602 aa5.36□□□□□ -1.55
HMGB3-203ENST00000430118 SEPT7Q16181 437 aaKnown RBP5.36□□□□□ -1.55
HMGB3-203ENST00000430118 RCSD1Q6JBY9 416 aa5.36□□□□□ -1.55
HMGB3-203ENST00000430118 USP53Q70EK8 1073 aa5.36□□□□□ -1.55
HMGB3-203ENST00000430118 ALYREFQ86V81 257 aaKnown RBP5.36□□□□□ -1.55
HMGB3-203ENST00000430118 CCDC146Q8IYE0 955 aa5.36□□□□□ -1.55
HMGB3-203ENST00000430118 AGGF1Q8N302 714 aaeCLIP5.36□□□□□ -1.55
HMGB3-203ENST00000430118 ZNF655Q8N720 491 aaPredicted RBP5.36□□□□□ -1.55
HMGB3-203ENST00000430118 DAGLBQ8NCG7 672 aa5.36□□□□□ -1.55
HMGB3-203ENST00000430118 NPLOC4Q8TAT6 608 aa5.36□□□□□ -1.55
HMGB3-203ENST00000430118 PI4K2BQ8TCG2 481 aa5.36□□□□□ -1.55
HMGB3-203ENST00000430118 SCYL1Q96KG9 808 aa5.36□□□□□ -1.55
HMGB3-203ENST00000430118 MYRFLQ96LU7 910 aa5.36□□□□□ -1.55
HMGB3-203ENST00000430118 ZDHHC15Q96MV8 337 aa5.36□□□□□ -1.55
HMGB3-203ENST00000430118 PSMD1Q99460 953 aa5.36□□□□□ -1.55
HMGB3-203ENST00000430118 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.36□□□□□ -1.55
HMGB3-203ENST00000430118 PRDM5Q9NQX1 630 aaPredicted RBP5.36□□□□□ -1.55
HMGB3-203ENST00000430118 GTF2IRD1Q9UHL9 959 aa5.36□□□□□ -1.55
HMGB3-203ENST00000430118 GPR55Q9Y2T6 319 aaPredicted RBP5.36□□□□□ -1.55
HMGB3-203ENST00000430118 BACE2Q9Y5Z0 518 aa5.36□□□□□ -1.55
HMGB3-203ENST00000430118 ARHGEF5Q12774 1597 aa5.36□□□□□ -1.55
HMGB3-203ENST00000430118 LRP5O75197 1615 aa5.36□□□□□ -1.55
HMGB3-203ENST00000430118 ARHGAP31Q2M1Z3 1444 aa5.35□□□□□ -1.55
HMGB3-203ENST00000430118 KANK1Q14678 1352 aa5.35□□□□□ -1.55
HMGB3-203ENST00000430118 LOC100996750A0A140TA64 210 aa5.35□□□□□ -1.55
HMGB3-203ENST00000430118 AURKAO14965 403 aa5.35□□□□□ -1.55
HMGB3-203ENST00000430118 MEFVO15553 781 aaPredicted RBP5.35□□□□□ -1.55
HMGB3-203ENST00000430118 KATNA1O75449 491 aa5.35□□□□□ -1.55
HMGB3-203ENST00000430118 PRAMEF1O95521 474 aa5.35□□□□□ -1.55
HMGB3-203ENST00000430118 CENPBP07199 599 aaPredicted RBP5.35□□□□□ -1.55
HMGB3-203ENST00000430118 U2AF1L5P0DN76 240 aaPredicted RBP5.35□□□□□ -1.55
HMGB3-203ENST00000430118 GLB1P16278 677 aa5.35□□□□□ -1.55
HMGB3-203ENST00000430118 ATF3P18847 181 aa5.35□□□□□ -1.55
HMGB3-203ENST00000430118 BMP8BP34820 402 aa5.35□□□□□ -1.55
HMGB3-203ENST00000430118 ECI1P42126 302 aa5.35□□□□□ -1.55
HMGB3-203ENST00000430118 U2AF1Q01081 240 aaKnown RBP eCLIP5.35□□□□□ -1.55
HMGB3-203ENST00000430118 GUCY1A3Q02108 690 aa5.35□□□□□ -1.55
HMGB3-203ENST00000430118 CYP4F3Q08477 520 aa5.35□□□□□ -1.55
HMGB3-203ENST00000430118 SCRN1Q12765 414 aa5.35□□□□□ -1.55
HMGB3-203ENST00000430118 PIN1Q13526 163 aaPredicted RBP5.35□□□□□ -1.55
HMGB3-203ENST00000430118 SART3Q15020 963 aaKnown RBP5.35□□□□□ -1.55
HMGB3-203ENST00000430118 SF1Q15637 639 aaKnown RBP5.35□□□□□ -1.55
HMGB3-203ENST00000430118 NXNQ6DKJ4 435 aa5.35□□□□□ -1.55
HMGB3-203ENST00000430118 PASD1Q8IV76 773 aa5.35□□□□□ -1.55
HMGB3-203ENST00000430118 PPIL6Q8IXY8 311 aa5.35□□□□□ -1.55
HMGB3-203ENST00000430118 DZIP1LQ8IYY4 767 aaKnown RBP5.35□□□□□ -1.55
HMGB3-203ENST00000430118 FBLIM1Q8WUP2 373 aa5.35□□□□□ -1.55
HMGB3-203ENST00000430118 DUSP23Q9BVJ7 150 aa5.35□□□□□ -1.55
HMGB3-203ENST00000430118 HDAC8Q9BY41 377 aa5.35□□□□□ -1.55
HMGB3-203ENST00000430118 KRTAP4-6Q9BYQ5 205 aa5.35□□□□□ -1.55
HMGB3-203ENST00000430118 CELF4Q9BZC1 486 aaKnown RBP5.35□□□□□ -1.55
HMGB3-203ENST00000430118 GPR62Q9BZJ7 368 aa5.35□□□□□ -1.55
HMGB3-203ENST00000430118 CDH19Q9H159 772 aa5.35□□□□□ -1.55
HMGB3-203ENST00000430118 CEP152O94986 1710 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 PIK3C2BO00750 1634 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 MROH1Q8NDA8 1641 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 ADGRB3O60242 1522 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 DCCP43146 1447 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 CEP162Q5TB80 1403 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 FAM95CA0A1B0GW59 222 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 H0Y8X5 98 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 CBX4O00257 560 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 GSTA4O15217 222 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 CAND2O75155 1236 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 ULK1O75385 1050 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 F2P00734 622 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 LTKP29376 864 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 LTBRP36941 435 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 LSSP48449 732 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 KRT85P78386 507 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 SNW1Q13573 536 aaKnown RBP5.34□□□□□ -1.55
HMGB3-203ENST00000430118 PIK3R6Q5UE93 754 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 SYDE2Q5VT97 1194 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 EEF1DP3Q658K8 133 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 PAOXQ6QHF9 649 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 PODNQ7Z5L7 613 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 TMC3Q7Z5M5 1100 aa5.34□□□□□ -1.55
HMGB3-203ENST00000430118 MTDHQ86UE4 582 aaKnown RBP5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 134.1 ms