RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 SRGAP2CP0DJJ0 459 aa6□□□□□ -1.45
USP40-204ENST00000427947 GLI4P10075 376 aa6□□□□□ -1.45
USP40-204ENST00000427947 SDSP20132 328 aa6□□□□□ -1.45
USP40-204ENST00000427947 ERVFRD-1P60508 538 aa6□□□□□ -1.45
USP40-204ENST00000427947 RAB3GAP1Q15042 981 aa6□□□□□ -1.45
USP40-204ENST00000427947 DALRD3Q5D0E6 543 aaKnown RBP6□□□□□ -1.45
USP40-204ENST00000427947 MROH9Q5TGP6 573 aa6□□□□□ -1.45
USP40-204ENST00000427947 DHX37Q8IY37 1157 aaKnown RBP6□□□□□ -1.45
USP40-204ENST00000427947 NIM1KQ8IY84 436 aa6□□□□□ -1.45
USP40-204ENST00000427947 LIN37Q96GY3 246 aaPredicted RBP6□□□□□ -1.45
USP40-204ENST00000427947 CDIP1Q9H305 208 aa6□□□□□ -1.45
USP40-204ENST00000427947 IPPKQ9H8X2 491 aa6□□□□□ -1.45
USP40-204ENST00000427947 RXFP1Q9HBX9 757 aa6□□□□□ -1.45
USP40-204ENST00000427947 PLAAQ9Y263 795 aa6□□□□□ -1.45
USP40-204ENST00000427947 X6R8D5 127 aa6□□□□□ -1.45
USP40-204ENST00000427947 CADPSQ9ULU8 1353 aa6□□□□□ -1.45
USP40-204ENST00000427947 CARMIL2Q6F5E8 1435 aa5.99□□□□□ -1.45
USP40-204ENST00000427947 SHROOM4Q9ULL8 1493 aa5.99□□□□□ -1.45
USP40-204ENST00000427947 TCRBV16S1A1N1A0A5B0 115 aa5.99□□□□□ -1.45
USP40-204ENST00000427947 ZNF503-AS2A6NEH8 195 aa5.99□□□□□ -1.45
USP40-204ENST00000427947 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.99□□□□□ -1.45
USP40-204ENST00000427947 OPA1O60313 960 aa5.99□□□□□ -1.45
USP40-204ENST00000427947 DNAJC8O75937 253 aaPredicted RBP5.99□□□□□ -1.45
USP40-204ENST00000427947 CYBBP04839 570 aa5.99□□□□□ -1.45
USP40-204ENST00000427947 GYS2P54840 703 aa5.99□□□□□ -1.45
USP40-204ENST00000427947 ZNF460Q14592 562 aa5.99□□□□□ -1.45
USP40-204ENST00000427947 PAQR3Q6TCH7 311 aa5.99□□□□□ -1.45
USP40-204ENST00000427947 IRF2BP1Q8IU81 584 aa5.99□□□□□ -1.45
USP40-204ENST00000427947 RIOX2Q8IUF8 465 aa5.99□□□□□ -1.45
USP40-204ENST00000427947 NETO2Q8NC67 525 aa5.99□□□□□ -1.45
USP40-204ENST00000427947 PCDH19Q8TAB3 1148 aa5.99□□□□□ -1.45
USP40-204ENST00000427947 EPB41L1Q9H4G0 881 aa5.99□□□□□ -1.45
USP40-204ENST00000427947 MAGEC2Q9UBF1 373 aaPredicted RBP5.99□□□□□ -1.45
USP40-204ENST00000427947 DBR1Q9UK59 544 aaKnown RBP5.99□□□□□ -1.45
USP40-204ENST00000427947 TNPO3Q9Y5L0 923 aaKnown RBP5.99□□□□□ -1.45
USP40-204ENST00000427947 ZC3H12DA2A288 527 aaKnown RBP5.98□□□□□ -1.45
USP40-204ENST00000427947 F8W031 263 aaPredicted RBP5.98□□□□□ -1.45
USP40-204ENST00000427947 DGKIO75912 1065 aa5.98□□□□□ -1.45
USP40-204ENST00000427947 GNAT1P11488 350 aa5.98□□□□□ -1.45
USP40-204ENST00000427947 IGFALSP35858 605 aa5.98□□□□□ -1.45
USP40-204ENST00000427947 RPTNQ6XPR3 784 aa5.98□□□□□ -1.45
USP40-204ENST00000427947 ZNF605Q86T29 641 aa5.98□□□□□ -1.45
USP40-204ENST00000427947 DCP2Q8IU60 420 aaKnown RBP5.98□□□□□ -1.45
USP40-204ENST00000427947 FAM177A1Q8N128 213 aaPredicted RBP5.98□□□□□ -1.45
USP40-204ENST00000427947 MFSD3Q96ES6 412 aa5.98□□□□□ -1.45
USP40-204ENST00000427947 DIRC2Q96SL1 478 aa5.98□□□□□ -1.45
USP40-204ENST00000427947 NUDT5Q9UKK9 219 aa5.98□□□□□ -1.45
USP40-204ENST00000427947 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.98□□□□□ -1.45
USP40-204ENST00000427947 COQ6Q9Y2Z9 468 aa5.98□□□□□ -1.45
USP40-204ENST00000427947 SIT1Q9Y3P8 196 aa5.98□□□□□ -1.45
USP40-204ENST00000427947 CCDC66A2RUB6 948 aa5.97□□□□□ -1.45
USP40-204ENST00000427947 ASLP04424 464 aa5.97□□□□□ -1.45
USP40-204ENST00000427947 DNM2P50570 870 aa5.97□□□□□ -1.45
USP40-204ENST00000427947 ST5P78524 1137 aa5.97□□□□□ -1.45
USP40-204ENST00000427947 TMEM62Q0P6H9 643 aa5.97□□□□□ -1.45
USP40-204ENST00000427947 NR1I3Q14994 352 aa5.97□□□□□ -1.45
USP40-204ENST00000427947 PLEKHN1Q494U1 663 aaPredicted RBP5.97□□□□□ -1.45
USP40-204ENST00000427947 FAM47CQ5HY64 1035 aa5.97□□□□□ -1.45
USP40-204ENST00000427947 CNNM4Q6P4Q7 775 aa5.97□□□□□ -1.45
USP40-204ENST00000427947 FBXW5Q969U6 566 aa5.97□□□□□ -1.45
USP40-204ENST00000427947 PEX11GQ96HA9 241 aa5.97□□□□□ -1.45
USP40-204ENST00000427947 AP5M1Q9H0R1 490 aa5.97□□□□□ -1.45
USP40-204ENST00000427947 NSUN3Q9H649 340 aaKnown RBP5.97□□□□□ -1.45
USP40-204ENST00000427947 KLHL14Q9P2G3 628 aa5.97□□□□□ -1.45
USP40-204ENST00000427947 HCFC2Q9Y5Z7 792 aa5.97□□□□□ -1.45
USP40-204ENST00000427947 LRRC10BA6NIK2 292 aa5.96□□□□□ -1.46
USP40-204ENST00000427947 WNT9AO14904 365 aa5.96□□□□□ -1.46
USP40-204ENST00000427947 JMJD7P0C870 316 aa5.96□□□□□ -1.46
USP40-204ENST00000427947 PYGMP11217 842 aa5.96□□□□□ -1.46
USP40-204ENST00000427947 COL6A2P12110 1019 aa5.96□□□□□ -1.46
USP40-204ENST00000427947 SLC6A11P48066 632 aa5.96□□□□□ -1.46
USP40-204ENST00000427947 SPIRE1Q08AE8 756 aa5.96□□□□□ -1.46
USP40-204ENST00000427947 TM4SF20Q53R12 229 aa5.96□□□□□ -1.46
USP40-204ENST00000427947 XP32Q5T750 250 aa5.96□□□□□ -1.46
USP40-204ENST00000427947 STEAP3Q658P3 488 aa5.96□□□□□ -1.46
USP40-204ENST00000427947 MCTP1Q6DN14 999 aa5.96□□□□□ -1.46
USP40-204ENST00000427947 ABHD17CQ6PCB6 329 aa5.96□□□□□ -1.46
USP40-204ENST00000427947 ZC3H14Q6PJT7 736 aaKnown RBP5.96□□□□□ -1.46
USP40-204ENST00000427947 PRR23BQ6ZRT6 265 aa5.96□□□□□ -1.46
USP40-204ENST00000427947 ZNF662Q6ZS27 426 aa5.96□□□□□ -1.46
USP40-204ENST00000427947 OTOP3Q7RTS5 596 aa5.96□□□□□ -1.46
USP40-204ENST00000427947 LRRTM3Q86VH5 581 aa5.96□□□□□ -1.46
USP40-204ENST00000427947 PIP4K2CQ8TBX8 421 aa5.96□□□□□ -1.46
USP40-204ENST00000427947 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.96□□□□□ -1.46
USP40-204ENST00000427947 EPB41L4BQ9H329 900 aa5.96□□□□□ -1.46
USP40-204ENST00000427947 CATSPERZQ9NTU4 200 aa5.96□□□□□ -1.46
USP40-204ENST00000427947 INTS7Q9NVH2 962 aaKnown RBP5.96□□□□□ -1.46
USP40-204ENST00000427947 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.96□□□□□ -1.46
USP40-204ENST00000427947 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.96□□□□□ -1.46
USP40-204ENST00000427947 SBNO2Q9Y2G9 1366 aa5.95□□□□□ -1.46
USP40-204ENST00000427947 B4E1Z4 1266 aa5.95□□□□□ -1.46
USP40-204ENST00000427947 KRIT1O00522 736 aa5.95□□□□□ -1.46
USP40-204ENST00000427947 ABLIM1O14639 778 aa5.95□□□□□ -1.46
USP40-204ENST00000427947 GSTA4O15217 222 aa5.95□□□□□ -1.46
USP40-204ENST00000427947 SGSM2O43147 1006 aa5.95□□□□□ -1.46
USP40-204ENST00000427947 CKMP06732 381 aa5.95□□□□□ -1.46
USP40-204ENST00000427947 MYCLP1P12525 358 aaPredicted RBP5.95□□□□□ -1.46
USP40-204ENST00000427947 FLT3P36888 993 aa5.95□□□□□ -1.46
USP40-204ENST00000427947 MAPKAPK2P49137 400 aa5.95□□□□□ -1.46
USP40-204ENST00000427947 CHRNA2Q15822 529 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms