RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 FAM53CQ9NYF3 392 aa11.92□□□□□ -0.5
CUX1-205ENST00000425244 HACL1Q9UJ83 578 aa11.92□□□□□ -0.5
CUX1-205ENST00000425244 FZD1Q9UP38 647 aa11.92□□□□□ -0.5
CUX1-205ENST00000425244 LGALS16A8MUM7 142 aa11.92□□□□□ -0.5
CUX1-205ENST00000425244 LAD1O00515 517 aa11.92□□□□□ -0.5
CUX1-205ENST00000425244 TTLL1O95922 423 aa11.92□□□□□ -0.5
CUX1-205ENST00000425244 RPS12P25398 132 aaKnown RBP11.92□□□□□ -0.5
CUX1-205ENST00000425244 TXKP42681 527 aa11.92□□□□□ -0.5
CUX1-205ENST00000425244 ABCB5Q2M3G0 1257 aa11.92□□□□□ -0.5
CUX1-205ENST00000425244 TSR1Q2NL82 804 aaKnown RBP11.92□□□□□ -0.5
CUX1-205ENST00000425244 C9orf131Q5VYM1 1079 aa11.92□□□□□ -0.5
CUX1-205ENST00000425244 REXO1Q8N1G1 1221 aaKnown RBP11.92□□□□□ -0.5
CUX1-205ENST00000425244 TRPM4Q8TD43 1214 aa11.92□□□□□ -0.5
CUX1-205ENST00000425244 RABGGTAQ92696 567 aa11.92□□□□□ -0.5
CUX1-205ENST00000425244 ZBTB9Q96C00 473 aa11.92□□□□□ -0.5
CUX1-205ENST00000425244 EHD4Q9H223 541 aa11.92□□□□□ -0.5
CUX1-205ENST00000425244 LUC7L2Q9Y383 392 aaKnown RBP11.92□□□□□ -0.5
CUX1-205ENST00000425244 POLR3GO15318 223 aaPredicted RBP11.91□□□□□ -0.5
CUX1-205ENST00000425244 RHOBTB3O94955 611 aa11.91□□□□□ -0.5
CUX1-205ENST00000425244 ZRANB2O95218 330 aaKnown RBP eCLIP11.91□□□□□ -0.5
CUX1-205ENST00000425244 FCER1AP12319 257 aa11.91□□□□□ -0.5
CUX1-205ENST00000425244 NT5C2P49902 561 aa11.91□□□□□ -0.5
CUX1-205ENST00000425244 IRX3P78415 501 aaPredicted RBP11.91□□□□□ -0.5
CUX1-205ENST00000425244 KCNB1Q14721 858 aa11.91□□□□□ -0.5
CUX1-205ENST00000425244 TERF2Q15554 542 aa11.91□□□□□ -0.5
CUX1-205ENST00000425244 CCDC84Q86UT8 332 aaPredicted RBP11.91□□□□□ -0.5
CUX1-205ENST00000425244 POTEDQ86YR6 584 aa11.91□□□□□ -0.5
CUX1-205ENST00000425244 GIMAP8Q8ND71 665 aaPredicted RBP11.91□□□□□ -0.5
CUX1-205ENST00000425244 CCDC47Q96A33 483 aaKnown RBP11.91□□□□□ -0.5
CUX1-205ENST00000425244 GPCPD1Q9NPB8 672 aa11.91□□□□□ -0.5
CUX1-205ENST00000425244 RNF216Q9NWF9 866 aaPredicted RBP11.91□□□□□ -0.5
CUX1-205ENST00000425244 TRIM10Q9UDY6 481 aa11.91□□□□□ -0.5
CUX1-205ENST00000425244 GUCA1BQ9UMX6 200 aa11.91□□□□□ -0.5
CUX1-205ENST00000425244 EEF2P13639 858 aaKnown RBP11.91□□□□□ -0.5
CUX1-205ENST00000425244 EEF1GP26641 437 aaKnown RBP11.91□□□□□ -0.5
CUX1-205ENST00000425244 PRPHP41219 470 aa11.91□□□□□ -0.5
CUX1-205ENST00000425244 PLA2G4AP47712 749 aa11.91□□□□□ -0.5
CUX1-205ENST00000425244 STK4Q13043 487 aa11.91□□□□□ -0.5
CUX1-205ENST00000425244 ANGEL2Q5VTE6 544 aaKnown RBP11.91□□□□□ -0.5
CUX1-205ENST00000425244 CC2D1AQ6P1N0 951 aaPredicted RBP11.91□□□□□ -0.5
CUX1-205ENST00000425244 SRGAP1Q7Z6B7 1085 aa11.91□□□□□ -0.5
CUX1-205ENST00000425244 COA7Q96BR5 231 aa11.91□□□□□ -0.5
CUX1-205ENST00000425244 TRIM9Q9C026 710 aa11.91□□□□□ -0.5
CUX1-205ENST00000425244 CDC23Q9UJX2 597 aa11.91□□□□□ -0.5
CUX1-205ENST00000425244 PCNTO95613 3336 aa11.91□□□□□ -0.5
CUX1-205ENST00000425244 MTIF2P46199 727 aaKnown RBP11.9□□□□□ -0.5
CUX1-205ENST00000425244 KLK7P49862 253 aa11.9□□□□□ -0.5
CUX1-205ENST00000425244 ZNF280AP59817 542 aaPredicted RBP11.9□□□□□ -0.5
CUX1-205ENST00000425244 ICA1Q05084 483 aa11.9□□□□□ -0.5
CUX1-205ENST00000425244 ZYXQ15942 572 aaKnown RBP11.9□□□□□ -0.5
CUX1-205ENST00000425244 TTI2Q6NXR4 508 aa11.9□□□□□ -0.5
CUX1-205ENST00000425244 KCTD1Q719H9 257 aa11.9□□□□□ -0.5
CUX1-205ENST00000425244 GPC2Q8N158 579 aa11.9□□□□□ -0.5
CUX1-205ENST00000425244 OR8K1Q8NGG5 319 aa11.9□□□□□ -0.5
CUX1-205ENST00000425244 NAPGQ99747 312 aaPredicted RBP11.9□□□□□ -0.5
CUX1-205ENST00000425244 THAP9Q9H5L6 903 aa11.9□□□□□ -0.5
CUX1-205ENST00000425244 ARFGAP3Q9NP61 516 aa11.9□□□□□ -0.5
CUX1-205ENST00000425244 TFR2Q9UP52 801 aa11.9□□□□□ -0.5
CUX1-205ENST00000425244 TRIM21P19474 475 aaKnown RBP11.9□□□□□ -0.5
CUX1-205ENST00000425244 ARHGAP25P42331 645 aa11.9□□□□□ -0.5
CUX1-205ENST00000425244 CCDC96Q2M329 555 aa11.9□□□□□ -0.5
CUX1-205ENST00000425244 DLK2Q6UY11 383 aa11.9□□□□□ -0.5
CUX1-205ENST00000425244 SPICE1Q8N0Z3 855 aa11.9□□□□□ -0.5
CUX1-205ENST00000425244 MTMR14Q8NCE2 650 aa11.9□□□□□ -0.5
CUX1-205ENST00000425244 AK8Q96MA6 479 aa11.9□□□□□ -0.5
CUX1-205ENST00000425244 TUBGCP2Q9BSJ2 902 aa11.9□□□□□ -0.5
CUX1-205ENST00000425244 DEFB129Q9H1M3 183 aa11.9□□□□□ -0.5
CUX1-205ENST00000425244 GPRC5DQ9NZD1 345 aa11.9□□□□□ -0.5
CUX1-205ENST00000425244 EPN1Q9Y6I3 576 aaPredicted RBP11.9□□□□□ -0.5
CUX1-205ENST00000425244 SIPA1L1O43166 1804 aa11.9□□□□□ -0.5
CUX1-205ENST00000425244 SASH3O75995 380 aa11.9□□□□□ -0.51
CUX1-205ENST00000425244 NDUFA10O95299 355 aa11.9□□□□□ -0.51
CUX1-205ENST00000425244 MYL1P05976 194 aa11.9□□□□□ -0.51
CUX1-205ENST00000425244 FECHP22830 423 aa11.9□□□□□ -0.51
CUX1-205ENST00000425244 SLC16A2P36021 539 aa11.9□□□□□ -0.51
CUX1-205ENST00000425244 TNNI2P48788 182 aa11.9□□□□□ -0.51
CUX1-205ENST00000425244 PRKG1Q13976 671 aa11.9□□□□□ -0.51
CUX1-205ENST00000425244 ANKRD40Q6AI12 368 aa11.9□□□□□ -0.51
CUX1-205ENST00000425244 CEP112Q8N8E3 955 aa11.9□□□□□ -0.51
CUX1-205ENST00000425244 P2RX5Q93086 422 aa11.9□□□□□ -0.51
CUX1-205ENST00000425244 CALML4Q96GE6 196 aa11.9□□□□□ -0.51
CUX1-205ENST00000425244 CNOT6LQ96LI5 555 aaKnown RBP11.9□□□□□ -0.51
CUX1-205ENST00000425244 CCDC17Q96LX7 622 aa11.9□□□□□ -0.51
CUX1-205ENST00000425244 DUSP9Q99956 384 aaKnown RBP11.9□□□□□ -0.51
CUX1-205ENST00000425244 ATRNL1Q5VV63 1379 aa11.9□□□□□ -0.51
CUX1-205ENST00000425244 NPM3O75607 178 aaKnown RBP11.89□□□□□ -0.51
CUX1-205ENST00000425244 RHOXF2BP0C7M4 288 aa11.89□□□□□ -0.51
CUX1-205ENST00000425244 PDHBP11177 359 aa11.89□□□□□ -0.51
CUX1-205ENST00000425244 CALCRLQ16602 461 aa11.89□□□□□ -0.51
CUX1-205ENST00000425244 TATDN1Q6P1N9 297 aa11.89□□□□□ -0.51
CUX1-205ENST00000425244 DHTKD1Q96HY7 919 aaPredicted RBP11.89□□□□□ -0.51
CUX1-205ENST00000425244 ZBED3Q96IU2 234 aaPredicted RBP11.89□□□□□ -0.51
CUX1-205ENST00000425244 CDK5RAP3Q96JB5 506 aa11.89□□□□□ -0.51
CUX1-205ENST00000425244 RHOXF2Q9BQY4 288 aa11.89□□□□□ -0.51
CUX1-205ENST00000425244 SLC39A2Q9NP94 309 aa11.89□□□□□ -0.51
CUX1-205ENST00000425244 GGA3Q9NZ52 723 aa11.89□□□□□ -0.51
CUX1-205ENST00000425244 ERICH4A6NGS2 130 aa11.89□□□□□ -0.51
CUX1-205ENST00000425244 TDP2O95551 362 aa11.89□□□□□ -0.51
CUX1-205ENST00000425244 TBC1D8O95759 1140 aa11.89□□□□□ -0.51
CUX1-205ENST00000425244 TBC1D8BQ0IIM8 1120 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms