RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 PHOSPHO2Q8TCD6 241 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 GDPD5Q8WTR4 605 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 ESR2Q92731 530 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 KHSRPQ92945 711 aaKnown RBP eCLIP9.48□□□□□ -0.89
VIM-202ENST00000421459 ZSCAN10Q96SZ4 725 aaPredicted RBP9.48□□□□□ -0.89
VIM-202ENST00000421459 SLC9A7Q96T83 725 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 RMDN3Q96TC7 470 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 OSBPL7Q9BZF2 842 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 IL25Q9H293 177 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 TSPYL2Q9H2G4 693 aaPredicted RBP9.48□□□□□ -0.89
VIM-202ENST00000421459 EPHX3Q9H6B9 360 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 BCAS3Q9H6U6 928 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 KAT14Q9H8E8 782 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 ZSWIM5Q9P217 1185 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 DDX41Q9UJV9 622 aaKnown RBP9.48□□□□□ -0.89
VIM-202ENST00000421459 ZMYM6O95789 1325 aa9.48□□□□□ -0.89
VIM-202ENST00000421459 GTPBP6O43824 516 aaPredicted RBP9.47□□□□□ -0.89
VIM-202ENST00000421459 DHX16O60231 1041 aaKnown RBP9.47□□□□□ -0.89
VIM-202ENST00000421459 PPP1R11O60927 126 aaPredicted RBP9.47□□□□□ -0.89
VIM-202ENST00000421459 RGS20O76081 388 aa9.47□□□□□ -0.89
VIM-202ENST00000421459 CFBP00751 764 aa9.47□□□□□ -0.89
VIM-202ENST00000421459 SELPP16109 830 aa9.47□□□□□ -0.89
VIM-202ENST00000421459 POU3F3P20264 500 aaPredicted RBP9.47□□□□□ -0.89
VIM-202ENST00000421459 PSEN2P49810 448 aa9.47□□□□□ -0.89
VIM-202ENST00000421459 SP2Q02086 613 aa9.47□□□□□ -0.89
VIM-202ENST00000421459 MBTPS1Q14703 1052 aa9.47□□□□□ -0.89
VIM-202ENST00000421459 STXBP2Q15833 593 aa9.47□□□□□ -0.89
VIM-202ENST00000421459 ZNF618Q5T7W0 954 aa9.47□□□□□ -0.89
VIM-202ENST00000421459 ARHGEF16Q5VV41 709 aa9.47□□□□□ -0.89
VIM-202ENST00000421459 TRAF7Q6Q0C0 670 aa9.47□□□□□ -0.89
VIM-202ENST00000421459 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.47□□□□□ -0.892e-10■■■■■ 45.9
VIM-202ENST00000421459 LRRC8DQ7L1W4 858 aa9.47□□□□□ -0.89
VIM-202ENST00000421459 FBXO11Q86XK2 927 aa9.47□□□□□ -0.89
VIM-202ENST00000421459 ENAHQ8N8S7 591 aaPredicted RBP9.47□□□□□ -0.89
VIM-202ENST00000421459 NSUN6Q8TEA1 469 aaKnown RBP9.47□□□□□ -0.89
VIM-202ENST00000421459 GPKOWQ92917 476 aaPredicted RBP eCLIP9.47□□□□□ -0.89
VIM-202ENST00000421459 MPHOSPH6Q99547 160 aaKnown RBP9.47□□□□□ -0.89
VIM-202ENST00000421459 RNF41Q9H4P4 317 aaPredicted RBP9.47□□□□□ -0.89
VIM-202ENST00000421459 PXMP2Q9NR77 195 aa9.47□□□□□ -0.89
VIM-202ENST00000421459 GTF2IRD1Q9UHL9 959 aa9.47□□□□□ -0.89
VIM-202ENST00000421459 ABCB11O95342 1321 aa9.47□□□□□ -0.89
VIM-202ENST00000421459 KIF28PB7ZC32 967 aa9.46□□□□□ -0.9
VIM-202ENST00000421459 NR3C2P08235 984 aa9.46□□□□□ -0.9
VIM-202ENST00000421459 MYCLP12524 364 aaPredicted RBP9.46□□□□□ -0.9
VIM-202ENST00000421459 CASTP20810 708 aaKnown RBP9.46□□□□□ -0.9
VIM-202ENST00000421459 HOXA13P31271 388 aaPredicted RBP9.46□□□□□ -0.9
VIM-202ENST00000421459 KCNJ6P48051 423 aa9.46□□□□□ -0.9
VIM-202ENST00000421459 MFSD10Q14728 455 aa9.46□□□□□ -0.9
VIM-202ENST00000421459 DGKDQ16760 1214 aa9.46□□□□□ -0.9
VIM-202ENST00000421459 SLC35G1Q2M3R5 365 aa9.46□□□□□ -0.9
VIM-202ENST00000421459 TRIM71Q2Q1W2 868 aaKnown RBP9.46□□□□□ -0.9
VIM-202ENST00000421459 CYB5R4Q7L1T6 521 aa9.46□□□□□ -0.9
VIM-202ENST00000421459 SESTD1Q86VW0 696 aa9.46□□□□□ -0.9
VIM-202ENST00000421459 DHX37Q8IY37 1157 aaKnown RBP9.46□□□□□ -0.9
VIM-202ENST00000421459 C7orf31Q8N865 590 aa9.46□□□□□ -0.9
VIM-202ENST00000421459 IL31RAQ8NI17 732 aa9.46□□□□□ -0.9
VIM-202ENST00000421459 AFAP1L1Q8TED9 768 aa9.46□□□□□ -0.9
VIM-202ENST00000421459 ANKS1AQ92625 1134 aa9.46□□□□□ -0.9
VIM-202ENST00000421459 ZBED2Q9BTP6 218 aa9.46□□□□□ -0.9
VIM-202ENST00000421459 CD320Q9NPF0 282 aa9.46□□□□□ -0.9
VIM-202ENST00000421459 TELO2Q9Y4R8 837 aa9.46□□□□□ -0.9
VIM-202ENST00000421459 MRVI1Q9Y6F6 885 aa9.46□□□□□ -0.9
VIM-202ENST00000421459 B4DLN1 442 aa9.45□□□□□ -0.9
VIM-202ENST00000421459 HAS3O00219 553 aa9.45□□□□□ -0.9
VIM-202ENST00000421459 BAIAP3O94812 1187 aa9.45□□□□□ -0.9
VIM-202ENST00000421459 CXCL10P02778 98 aa9.45□□□□□ -0.9
VIM-202ENST00000421459 PARP1P09874 1014 aaKnown RBP9.45□□□□□ -0.9
VIM-202ENST00000421459 PCP11498 1178 aaKnown RBP9.45□□□□□ -0.9
VIM-202ENST00000421459 MRPL12P52815 198 aaKnown RBP9.45□□□□□ -0.9
VIM-202ENST00000421459 KIAA0753Q2KHM9 967 aa9.45□□□□□ -0.9
VIM-202ENST00000421459 HSDL1Q3SXM5 330 aa9.45□□□□□ -0.9
VIM-202ENST00000421459 ASPRV1Q53RT3 343 aa9.45□□□□□ -0.9
VIM-202ENST00000421459 CNKSR3Q6P9H4 555 aa9.45□□□□□ -0.9
VIM-202ENST00000421459 CHD1LQ86WJ1 897 aa9.45□□□□□ -0.9
VIM-202ENST00000421459 IQCA1Q86XH1 822 aa9.45□□□□□ -0.9
VIM-202ENST00000421459 MCF2L2Q86YR7 1114 aa9.45□□□□□ -0.9
VIM-202ENST00000421459 CAGE1Q8TC20 777 aa9.45□□□□□ -0.9
VIM-202ENST00000421459 HLA-CQ95604 372 aa9.45□□□□□ -0.9
VIM-202ENST00000421459 IWS1Q96ST2 819 aa9.45□□□□□ -0.9
VIM-202ENST00000421459 SUGCTQ9HAC7 445 aa9.45□□□□□ -0.9
VIM-202ENST00000421459 SENP2Q9HC62 589 aa9.45□□□□□ -0.9
VIM-202ENST00000421459 PNMA2Q9UL42 364 aa9.45□□□□□ -0.9
VIM-202ENST00000421459 MRPL11Q9Y3B7 192 aaKnown RBP9.45□□□□□ -0.9
VIM-202ENST00000421459 TCF20Q9UGU0 1960 aaKnown RBP9.44□□□□□ -0.9
VIM-202ENST00000421459 SCN10AQ9Y5Y9 1956 aa9.44□□□□□ -0.9
VIM-202ENST00000421459 LINC01553A4QN01 128 aa9.44□□□□□ -0.9
VIM-202ENST00000421459 FAM86C2PA6NEL3 165 aa9.44□□□□□ -0.9
VIM-202ENST00000421459 EIF3JO75822 258 aaKnown RBP9.44□□□□□ -0.9
VIM-202ENST00000421459 GJB5O95377 273 aa9.44□□□□□ -0.9
VIM-202ENST00000421459 GGPS1O95749 300 aa9.44□□□□□ -0.9
VIM-202ENST00000421459 HSD17B4P51659 736 aa9.44□□□□□ -0.9
VIM-202ENST00000421459 NUCB1Q02818 461 aa9.44□□□□□ -0.9
VIM-202ENST00000421459 PTK7Q13308 1070 aa9.44□□□□□ -0.9
VIM-202ENST00000421459 LAMC2Q13753 1193 aa9.44□□□□□ -0.9
VIM-202ENST00000421459 AAK1Q2M2I8 961 aa9.44□□□□□ -0.9
VIM-202ENST00000421459 MYSM1Q5VVJ2 828 aa9.44□□□□□ -0.9
VIM-202ENST00000421459 HOMER1Q86YM7 354 aa9.44□□□□□ -0.9
VIM-202ENST00000421459 SMC5Q8IY18 1101 aa9.44□□□□□ -0.9
VIM-202ENST00000421459 CCDC155Q8N6L0 562 aa9.44□□□□□ -0.9
VIM-202ENST00000421459 PPTC7Q8NI37 304 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms