RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 CAVIN1Q6NZI2 390 aaKnown RBP12.81□□□□□ -0.36
LINC00539-201ENST00000411525 USP17L6PQ6QN14 398 aa12.81□□□□□ -0.36
LINC00539-201ENST00000411525 KRI1Q8N9T8 703 aaKnown RBP12.81□□□□□ -0.36
LINC00539-201ENST00000411525 REPS2Q8NFH8 660 aa12.81□□□□□ -0.36
LINC00539-201ENST00000411525 TBCKQ8TEA7 893 aa12.81□□□□□ -0.36
LINC00539-201ENST00000411525 TRIB2Q92519 343 aa12.81□□□□□ -0.36
LINC00539-201ENST00000411525 SYAP1Q96A49 352 aaPredicted RBP12.81□□□□□ -0.36
LINC00539-201ENST00000411525 ANO3Q9BYT9 981 aa12.81□□□□□ -0.36
LINC00539-201ENST00000411525 C11orf49Q9H6J7 331 aa12.81□□□□□ -0.36
LINC00539-201ENST00000411525 RAVER2Q9HCJ3 691 aaKnown RBP12.81□□□□□ -0.36
LINC00539-201ENST00000411525 FBXO2Q9UK22 296 aaPredicted RBP12.81□□□□□ -0.36
LINC00539-201ENST00000411525 OGDHLQ9ULD0 1010 aa12.81□□□□□ -0.36
LINC00539-201ENST00000411525 SPDYE16A6NNV3 312 aaPredicted RBP12.8□□□□□ -0.36
LINC00539-201ENST00000411525 CUTAO60888 179 aa12.8□□□□□ -0.36
LINC00539-201ENST00000411525 PRKAR2AP13861 404 aaKnown RBP12.8□□□□□ -0.36
LINC00539-201ENST00000411525 LIG1P18858 919 aa12.8□□□□□ -0.36
LINC00539-201ENST00000411525 PTPREP23469 700 aa12.8□□□□□ -0.36
LINC00539-201ENST00000411525 MCM7P33993 719 aa12.8□□□□□ -0.36
LINC00539-201ENST00000411525 RGS2P41220 211 aa12.8□□□□□ -0.36
LINC00539-201ENST00000411525 OAZ1P54368 228 aa12.8□□□□□ -0.36
LINC00539-201ENST00000411525 ATP2C1P98194 919 aaPredicted RBP12.8□□□□□ -0.36
LINC00539-201ENST00000411525 LETM2Q2VYF4 491 aa12.8□□□□□ -0.36
LINC00539-201ENST00000411525 AXDND1Q5T1B0 1012 aaPredicted RBP12.8□□□□□ -0.36
LINC00539-201ENST00000411525 PLEKHH3Q7Z736 793 aa12.8□□□□□ -0.36
LINC00539-201ENST00000411525 CPXCR1Q8N123 301 aa12.8□□□□□ -0.36
LINC00539-201ENST00000411525 FSIP1Q8NA03 581 aa12.8□□□□□ -0.36
LINC00539-201ENST00000411525 DIS3LQ8TF46 1054 aaKnown RBP12.8□□□□□ -0.36
LINC00539-201ENST00000411525 MRPS27Q92552 414 aaKnown RBP12.8□□□□□ -0.36
LINC00539-201ENST00000411525 AGBL1Q96MI9 1066 aa12.8□□□□□ -0.36
LINC00539-201ENST00000411525 TXNRD2Q9NNW7 524 aa12.8□□□□□ -0.36
LINC00539-201ENST00000411525 RBPJLQ9UBG7 517 aa12.8□□□□□ -0.36
LINC00539-201ENST00000411525 ADAMTS5Q9UNA0 930 aa12.8□□□□□ -0.36
LINC00539-201ENST00000411525 RABGAP1Q9Y3P9 1069 aa12.8□□□□□ -0.36
LINC00539-201ENST00000411525 MYH7BA7E2Y1 1941 aa12.8□□□□□ -0.36
LINC00539-201ENST00000411525 LAMA3Q16787 3333 aa12.8□□□□□ -0.36
LINC00539-201ENST00000411525 SPDYE3A6NKU9 549 aa12.79□□□□□ -0.36
LINC00539-201ENST00000411525 GCOM1H8Y6P7 765 aaPredicted RBP12.79□□□□□ -0.36
LINC00539-201ENST00000411525 FOSP01100 380 aaPredicted RBP12.79□□□□□ -0.36
LINC00539-201ENST00000411525 POLR2MP0CAP2 368 aa12.79□□□□□ -0.36
LINC00539-201ENST00000411525 TRIM32Q13049 653 aa12.79□□□□□ -0.36
LINC00539-201ENST00000411525 CCDC73Q6ZRK6 1079 aa12.79□□□□□ -0.36
LINC00539-201ENST00000411525 GPR142Q7Z601 462 aa12.79□□□□□ -0.36
LINC00539-201ENST00000411525 C7orf61Q8IZ16 206 aa12.79□□□□□ -0.36
LINC00539-201ENST00000411525 FERMT2Q96AC1 680 aa12.79□□□□□ -0.36
LINC00539-201ENST00000411525 GZF1Q9H116 711 aaPredicted RBP12.79□□□□□ -0.36
LINC00539-201ENST00000411525 GOLPH3LQ9H4A5 285 aa12.79□□□□□ -0.36
LINC00539-201ENST00000411525 DDX19AQ9NUU7 478 aaKnown RBP12.79□□□□□ -0.36
LINC00539-201ENST00000411525 HOXC10Q9NYD6 342 aa12.79□□□□□ -0.36
LINC00539-201ENST00000411525 TMEM63CQ9P1W3 806 aa12.79□□□□□ -0.36
LINC00539-201ENST00000411525 SRPRBQ9Y5M8 271 aaKnown RBP12.79□□□□□ -0.36
LINC00539-201ENST00000411525 SMCHD1A6NHR9 2005 aa12.79□□□□□ -0.36
LINC00539-201ENST00000411525 COL6A3P12111 3177 aa12.79□□□□□ -0.36
LINC00539-201ENST00000411525 LAD1O00515 517 aa12.78□□□□□ -0.36
LINC00539-201ENST00000411525 ATP2A1O14983 1001 aa12.78□□□□□ -0.36
LINC00539-201ENST00000411525 NEMFO60524 1076 aa12.78□□□□□ -0.36
LINC00539-201ENST00000411525 CCNT1O60563 726 aaKnown RBP12.78□□□□□ -0.36
LINC00539-201ENST00000411525 CFBP00751 764 aa12.78□□□□□ -0.36
LINC00539-201ENST00000411525 ALAS1P13196 640 aa12.78□□□□□ -0.36
LINC00539-201ENST00000411525 CMA1P23946 247 aa12.78□□□□□ -0.36
LINC00539-201ENST00000411525 HOXA13P31271 388 aaPredicted RBP12.78□□□□□ -0.36
LINC00539-201ENST00000411525 GHRHRQ02643 423 aa12.78□□□□□ -0.36
LINC00539-201ENST00000411525 PTGDRQ13258 359 aa12.78□□□□□ -0.36
LINC00539-201ENST00000411525 Q3C1V9 767 aa12.78□□□□□ -0.36
LINC00539-201ENST00000411525 CCDC183Q5T5S1 534 aa12.78□□□□□ -0.36
LINC00539-201ENST00000411525 GPR153Q6NV75 609 aa12.78□□□□□ -0.36
LINC00539-201ENST00000411525 MCF2L2Q86YR7 1114 aa12.78□□□□□ -0.36
LINC00539-201ENST00000411525 ZNF579Q8NAF0 562 aaKnown RBP12.78□□□□□ -0.36
LINC00539-201ENST00000411525 CLEC4DQ8WXI8 215 aa12.78□□□□□ -0.36
LINC00539-201ENST00000411525 USP6NLQ92738 828 aa12.78□□□□□ -0.36
LINC00539-201ENST00000411525 CLIC6Q96NY7 704 aa12.78□□□□□ -0.36
LINC00539-201ENST00000411525 NAP1L4Q99733 375 aaKnown RBP12.78□□□□□ -0.36
LINC00539-201ENST00000411525 APBA2Q99767 749 aa12.78□□□□□ -0.36
LINC00539-201ENST00000411525 GDF15Q99988 308 aa12.78□□□□□ -0.36
LINC00539-201ENST00000411525 PAGR1Q9BTK6 254 aa12.78□□□□□ -0.36
LINC00539-201ENST00000411525 ZNF214Q9UL59 606 aaPredicted RBP12.78□□□□□ -0.36
LINC00539-201ENST00000411525 MRVI1Q9Y6F6 885 aa12.78□□□□□ -0.36
LINC00539-201ENST00000411525 A0A0C4DFX4 3053 aa12.77□□□□□ -0.36
LINC00539-201ENST00000411525 FRMPD3Q5JV73 1810 aa12.77□□□□□ -0.37
LINC00539-201ENST00000411525 FAM237AA0A1B0GTK4 181 aa12.77□□□□□ -0.37
LINC00539-201ENST00000411525 NFIBO00712 420 aa12.77□□□□□ -0.37
LINC00539-201ENST00000411525 NR1I2O75469 434 aa12.77□□□□□ -0.37
LINC00539-201ENST00000411525 GCFC2P16383 781 aaKnown RBP12.77□□□□□ -0.37
LINC00539-201ENST00000411525 SREBF1P36956 1147 aa12.77□□□□□ -0.37
LINC00539-201ENST00000411525 HSD17B4P51659 736 aa12.77□□□□□ -0.37
LINC00539-201ENST00000411525 FAM160A1Q05DH4 1040 aa12.77□□□□□ -0.37
LINC00539-201ENST00000411525 CACNB2Q08289 660 aaPredicted RBP12.77□□□□□ -0.37
LINC00539-201ENST00000411525 TMEM132BQ14DG7 1078 aa12.77□□□□□ -0.37
LINC00539-201ENST00000411525 MORN1Q5T089 497 aa12.77□□□□□ -0.37
LINC00539-201ENST00000411525 RESP18Q5W5W9 173 aa12.77□□□□□ -0.37
LINC00539-201ENST00000411525 ARL6IP4Q66PJ3 421 aaKnown RBP12.77□□□□□ -0.37
LINC00539-201ENST00000411525 SNRNP48Q6IEG0 339 aaKnown RBP12.77□□□□□ -0.37
LINC00539-201ENST00000411525 PPP4R3AQ6IN85 833 aa12.77□□□□□ -0.37
LINC00539-201ENST00000411525 SHC4Q6S5L8 630 aa12.77□□□□□ -0.37
LINC00539-201ENST00000411525 LBX2Q6XYB7 198 aa12.77□□□□□ -0.37
LINC00539-201ENST00000411525 SAMD3Q8N6K7 520 aa12.77□□□□□ -0.37
LINC00539-201ENST00000411525 MB21D1Q8N884 522 aa12.77□□□□□ -0.37
LINC00539-201ENST00000411525 C4orf32Q8N8J7 132 aa12.77□□□□□ -0.37
LINC00539-201ENST00000411525 TRERF1Q96PN7 1200 aa12.77□□□□□ -0.37
LINC00539-201ENST00000411525 TEX13BQ9BXU2 312 aa12.77□□□□□ -0.37
LINC00539-201ENST00000411525 PORCNQ9H237 461 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms