RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 EIF3JO75822 258 aaKnown RBP22.03■■□□□ 1.12
SF3A1-202ENST00000411423 CABYRO75952 493 aa22.03■■□□□ 1.12
SF3A1-202ENST00000411423 CPT1AP50416 773 aa22.03■■□□□ 1.12
SF3A1-202ENST00000411423 KRT32Q14532 448 aa22.03■■□□□ 1.12
SF3A1-202ENST00000411423 USP17L6PQ6QN14 398 aa22.03■■□□□ 1.12
SF3A1-202ENST00000411423 VSIG10LQ86VR7 867 aa22.03■■□□□ 1.12
SF3A1-202ENST00000411423 JAKMIP1Q96N16 626 aaKnown RBP22.03■■□□□ 1.12
SF3A1-202ENST00000411423 TRPV6Q9H1D0 765 aa22.03■■□□□ 1.12
SF3A1-202ENST00000411423 FRMPD4Q14CM0 1322 aa22.03■■□□□ 1.12
SF3A1-202ENST00000411423 MROH7Q68CQ1 1323 aa22.03■■□□□ 1.12
SF3A1-202ENST00000411423 B4GALT4O60513 344 aa22.02■■□□□ 1.12
SF3A1-202ENST00000411423 RAG1P15918 1043 aa22.02■■□□□ 1.12
SF3A1-202ENST00000411423 CDC27P30260 824 aa22.02■■□□□ 1.12
SF3A1-202ENST00000411423 MRPS9P82933 396 aaKnown RBP22.02■■□□□ 1.12
SF3A1-202ENST00000411423 AFG1LQ8WV93 481 aa22.02■■□□□ 1.12
SF3A1-202ENST00000411423 UMODL1Q5DID0 1318 aa22.02■■□□□ 1.12
SF3A1-202ENST00000411423 SCN10AQ9Y5Y9 1956 aa22.01■■□□□ 1.11
SF3A1-202ENST00000411423 KLF18A0A0U1RQI7 1052 aa22.01■■□□□ 1.11
SF3A1-202ENST00000411423 SORBS3O60504 671 aa22.01■■□□□ 1.11
SF3A1-202ENST00000411423 TIMP1P01033 207 aa22.01■■□□□ 1.11
SF3A1-202ENST00000411423 SP2Q02086 613 aa22.01■■□□□ 1.11
SF3A1-202ENST00000411423 TRAF1Q13077 416 aa22.01■■□□□ 1.11
SF3A1-202ENST00000411423 BCAS3Q9H6U6 928 aa22.01■■□□□ 1.11
SF3A1-202ENST00000411423 POLR3EQ9NVU0 708 aa22.01■■□□□ 1.11
SF3A1-202ENST00000411423 SEC63Q9UGP8 760 aaKnown RBP22.01■■□□□ 1.11
SF3A1-202ENST00000411423 ZBTB43O43298 467 aa22■■□□□ 1.11
SF3A1-202ENST00000411423 GH1P01241 217 aa22■■□□□ 1.11
SF3A1-202ENST00000411423 MMP3P08254 477 aa22■■□□□ 1.11
SF3A1-202ENST00000411423 APOBRQ0VD83 1088 aa22■■□□□ 1.11
SF3A1-202ENST00000411423 ERICH6BQ5W0A0 696 aa22■■□□□ 1.11
SF3A1-202ENST00000411423 TYW1BQ6NUM6 668 aa22■■□□□ 1.11
SF3A1-202ENST00000411423 Q6ZUG5 572 aa22■■□□□ 1.11
SF3A1-202ENST00000411423 MTG1Q9BT17 334 aaPredicted RBP22■■□□□ 1.11
SF3A1-202ENST00000411423 PPP1R12CQ9BZL4 782 aa22■■□□□ 1.11
SF3A1-202ENST00000411423 MRVI1Q9Y6F6 885 aa22■■□□□ 1.11
SF3A1-202ENST00000411423 SEMA3FQ13275 785 aa21.99■■□□□ 1.11
SF3A1-202ENST00000411423 RTN1Q16799 776 aa21.99■■□□□ 1.11
SF3A1-202ENST00000411423 NBPF20Q3BBV1 942 aa21.99■■□□□ 1.11
SF3A1-202ENST00000411423 KAT2BQ92831 832 aa21.99■■□□□ 1.11
SF3A1-202ENST00000411423 USP26Q9BXU7 913 aa21.99■■□□□ 1.11
SF3A1-202ENST00000411423 ALDH8A1Q9H2A2 487 aaPredicted RBP21.99■■□□□ 1.11
SF3A1-202ENST00000411423 TRMT13Q9NUP7 481 aaKnown RBP21.99■■□□□ 1.11
SF3A1-202ENST00000411423 GOLGA8AA7E2F4 631 aa21.98■■□□□ 1.11
SF3A1-202ENST00000411423 GOLGA8BA8MQT2 603 aa21.98■■□□□ 1.11
SF3A1-202ENST00000411423 PIK3CDO00329 1044 aa21.98■■□□□ 1.11
SF3A1-202ENST00000411423 TLR3O15455 904 aaKnown RBP21.98■■□□□ 1.11
SF3A1-202ENST00000411423 REC8O95072 547 aa21.98■■□□□ 1.11
SF3A1-202ENST00000411423 HMGB1P09429 215 aaKnown RBP21.98■■□□□ 1.11
SF3A1-202ENST00000411423 RPS6KB1P23443 525 aa21.98■■□□□ 1.11
SF3A1-202ENST00000411423 CCND2P30279 289 aa21.98■■□□□ 1.11
SF3A1-202ENST00000411423 CYP2C18P33260 490 aa21.98■■□□□ 1.11
SF3A1-202ENST00000411423 UBE2SQ16763 222 aa21.98■■□□□ 1.11
SF3A1-202ENST00000411423 WWC2Q6AWC2 1192 aa21.98■■□□□ 1.11
SF3A1-202ENST00000411423 SYNE3Q6ZMZ3 975 aa21.98■■□□□ 1.11
SF3A1-202ENST00000411423 C16orf59Q7L2K0 433 aa21.98■■□□□ 1.11
SF3A1-202ENST00000411423 BRF1Q92994 677 aa21.98■■□□□ 1.11
SF3A1-202ENST00000411423 RBAK-RBAKDNI3L0D1 243 aa21.97■■□□□ 1.11
SF3A1-202ENST00000411423 ADD1P35611 737 aaKnown RBP21.97■■□□□ 1.11
SF3A1-202ENST00000411423 FPGSQ05932 587 aa21.97■■□□□ 1.11
SF3A1-202ENST00000411423 MFSD5Q6N075 450 aa21.97■■□□□ 1.11
SF3A1-202ENST00000411423 BLOC1S2Q6QNY1 142 aa21.97■■□□□ 1.11
SF3A1-202ENST00000411423 EMID1Q96A84 441 aaPredicted RBP21.97■■□□□ 1.11
SF3A1-202ENST00000411423 AGXT2Q9BYV1 514 aa21.97■■□□□ 1.11
SF3A1-202ENST00000411423 RBM28Q9NW13 759 aaKnown RBP21.97■■□□□ 1.11
SF3A1-202ENST00000411423 RTEL1Q9NZ71 1219 aa21.97■■□□□ 1.11
SF3A1-202ENST00000411423 TELO2Q9Y4R8 837 aa21.97■■□□□ 1.11
SF3A1-202ENST00000411423 CYP2C9P11712 490 aa21.96■■□□□ 1.11
SF3A1-202ENST00000411423 CSF2RAP15509 400 aa21.96■■□□□ 1.11
SF3A1-202ENST00000411423 CASTP20810 708 aaKnown RBP21.96■■□□□ 1.11
SF3A1-202ENST00000411423 UBA1P22314 1058 aaKnown RBP21.96■■□□□ 1.11
SF3A1-202ENST00000411423 Q7L0L9 218 aa21.96■■□□□ 1.11
SF3A1-202ENST00000411423 HEATR3Q7Z4Q2 680 aa21.96■■□□□ 1.11
SF3A1-202ENST00000411423 SMARCC2Q8TAQ2 1214 aa21.96■■□□□ 1.11
SF3A1-202ENST00000411423 VWCEQ96DN2 955 aa21.96■■□□□ 1.11
SF3A1-202ENST00000411423 NOC4LQ9BVI4 516 aaKnown RBP21.96■■□□□ 1.11
SF3A1-202ENST00000411423 WNT8AQ9H1J5 351 aa21.96■■□□□ 1.11
SF3A1-202ENST00000411423 PSTPIP2Q9H939 334 aa21.96■■□□□ 1.11
SF3A1-202ENST00000411423 MYH7BA7E2Y1 1941 aa21.96■■□□□ 1.11
SF3A1-202ENST00000411423 GGPS1O95749 300 aa21.95■■□□□ 1.1
SF3A1-202ENST00000411423 HSDL1Q3SXM5 330 aa21.95■■□□□ 1.1
SF3A1-202ENST00000411423 CELF3Q5SZQ8 465 aaKnown RBP21.95■■□□□ 1.1
SF3A1-202ENST00000411423 MYSM1Q5VVJ2 828 aa21.95■■□□□ 1.1
SF3A1-202ENST00000411423 DHX37Q8IY37 1157 aaKnown RBP21.95■■□□□ 1.1
SF3A1-202ENST00000411423 INPP4AQ96PE3 977 aaPredicted RBP21.95■■□□□ 1.1
SF3A1-202ENST00000411423 CTAGE1Q96RT6 745 aa21.95■■□□□ 1.1
SF3A1-202ENST00000411423 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.95■■□□□ 1.12e-12■□□□□ 8.5
SF3A1-202ENST00000411423 HIPK3Q9H422 1215 aa21.95■■□□□ 1.1
SF3A1-202ENST00000411423 V9GY48 417 aaPredicted RBP21.95■■□□□ 1.1
SF3A1-202ENST00000411423 ADAMTS3O15072 1205 aa21.94■■□□□ 1.1
SF3A1-202ENST00000411423 KPNA6O60684 536 aa21.94■■□□□ 1.1
SF3A1-202ENST00000411423 CENPBP07199 599 aaPredicted RBP21.94■■□□□ 1.1
SF3A1-202ENST00000411423 ACRP10323 421 aa21.94■■□□□ 1.1
SF3A1-202ENST00000411423 BRDTQ58F21 947 aaPredicted RBP21.94■■□□□ 1.1
SF3A1-202ENST00000411423 FBXL16Q8N461 479 aa21.94■■□□□ 1.1
SF3A1-202ENST00000411423 PPTC7Q8NI37 304 aa21.94■■□□□ 1.1
SF3A1-202ENST00000411423 SEZ6LQ9BYH1 1024 aa21.94■■□□□ 1.1
SF3A1-202ENST00000411423 NAP1L2Q9ULW6 460 aaPredicted RBP21.94■■□□□ 1.1
SF3A1-202ENST00000411423 NID2Q14112 1375 aa21.94■■□□□ 1.1
SF3A1-202ENST00000411423 STXBP3O00186 592 aa21.93■■□□□ 1.1
SF3A1-202ENST00000411423 ZNF286BP0CG31 522 aa21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms