RNA–Protein interactions for RNA: ENST00000411220.1

RNU4-88P-201, Transcript of RNA, U4 small nuclear 88, pseudogene, humanhuman

BASIC

Gene RNU4-88P, Length 86 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-88P-201ENST00000411220 FUCA1P04066 466 aa-0.3□□□□□ -2.46
RNU4-88P-201ENST00000411220 ALPLP05186 524 aa-0.3□□□□□ -2.46
RNU4-88P-201ENST00000411220 C8BP07358 591 aa-0.3□□□□□ -2.46
RNU4-88P-201ENST00000411220 KRTAP1-4P0C5Y4 121 aa-0.3□□□□□ -2.46
RNU4-88P-201ENST00000411220 CES1P23141 567 aa-0.3□□□□□ -2.46
RNU4-88P-201ENST00000411220 NR4A2P43354 598 aa-0.3□□□□□ -2.46
RNU4-88P-201ENST00000411220 CHRNA2Q15822 529 aa-0.3□□□□□ -2.46
RNU4-88P-201ENST00000411220 KRTAP6-1Q3LI64 71 aa-0.3□□□□□ -2.46
RNU4-88P-201ENST00000411220 ZNF788Q6ZQV5 615 aa-0.3□□□□□ -2.46
RNU4-88P-201ENST00000411220 LRRC55Q6ZSA7 311 aa-0.3□□□□□ -2.46
RNU4-88P-201ENST00000411220 ARHGEF25Q86VW2 580 aa-0.3□□□□□ -2.46
RNU4-88P-201ENST00000411220 NR2C2APQ86WQ0 139 aa-0.3□□□□□ -2.46
RNU4-88P-201ENST00000411220 DENND1AQ8TEH3 1009 aa-0.3□□□□□ -2.46
RNU4-88P-201ENST00000411220 TMEM209Q96SK2 561 aa-0.3□□□□□ -2.46
RNU4-88P-201ENST00000411220 DUSP26Q9BV47 211 aa-0.3□□□□□ -2.46
RNU4-88P-201ENST00000411220 PICK1Q9NRD5 415 aa-0.3□□□□□ -2.46
RNU4-88P-201ENST00000411220 IMPACTQ9P2X3 320 aa-0.3□□□□□ -2.46
RNU4-88P-201ENST00000411220 GPR55Q9Y2T6 319 aaPredicted RBP-0.3□□□□□ -2.46
RNU4-88P-201ENST00000411220 HS3ST4Q9Y661 456 aa-0.3□□□□□ -2.46
RNU4-88P-201ENST00000411220 SNED1Q8TER0 1413 aa-0.3□□□□□ -2.46
RNU4-88P-201ENST00000411220 A0A1W2PQ45 241 aaPredicted RBP-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 A0A1W2PQY0 241 aa-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 TMEM129A0AVI4 362 aa-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 FAM90A8PA6NJQ4 464 aa-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 PPEF2O14830 753 aa-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 FANCGO15287 622 aa-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 LDLRP01130 860 aa-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 FAM90A13PP0C7W8 464 aa-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 FAM90A24PP0C7X0 464 aa-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 CR2P20023 1033 aa-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 AVPR1BP47901 424 aa-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 RAC3P60763 192 aa-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 CEP85LQ5SZL2 805 aa-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 ZNF662Q6ZS27 426 aa-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 PTF1AQ7RTS3 328 aa-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 SLCO6A1Q86UG4 719 aa-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 STK32CQ86UX6 486 aa-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 IFNL2Q8IZJ0 200 aa-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 CTCFLQ8NI51 663 aaPredicted RBP-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 TSPAN17Q96FV3 270 aa-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 THOC3Q96J01 351 aaKnown RBP-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 SYT3Q9BQG1 590 aa-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 TRAF4Q9BUZ4 470 aaPredicted RBP-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 BHMT2Q9H2M3 363 aa-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 LATS2Q9NRM7 1088 aa-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 TMEM260Q9NX78 707 aa-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 DNMT3BQ9UBC3 853 aaKnown RBP-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 FTSJ1Q9UET6 329 aa-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 BTBD3Q9Y2F9 522 aa-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 NTNG1Q9Y2I2 539 aa-0.31□□□□□ -2.46
RNU4-88P-201ENST00000411220 PCLOQ9Y6V0 5065 aa-0.32□□□□□ -2.46
RNU4-88P-201ENST00000411220 C4orf47A7E2U8 309 aa-0.32□□□□□ -2.46
RNU4-88P-201ENST00000411220 C17orf51A8MQB3 221 aa-0.32□□□□□ -2.46
RNU4-88P-201ENST00000411220 METTL12A8MUP2 240 aa-0.32□□□□□ -2.46
RNU4-88P-201ENST00000411220 HNRNPA1P09651 372 aaKnown RBP eCLIP-0.32□□□□□ -2.46
RNU4-88P-201ENST00000411220 SFPQP23246 707 aaKnown RBP eCLIP-0.32□□□□□ -2.46
RNU4-88P-201ENST00000411220 MSX2P35548 267 aaPredicted RBP-0.32□□□□□ -2.46
RNU4-88P-201ENST00000411220 ITGA1P56199 1179 aa-0.32□□□□□ -2.46
RNU4-88P-201ENST00000411220 FOXL1Q12952 345 aa-0.32□□□□□ -2.46
RNU4-88P-201ENST00000411220 FKBP5Q13451 457 aaPredicted RBP-0.32□□□□□ -2.46
RNU4-88P-201ENST00000411220 TOB2Q14106 344 aaPredicted RBP-0.32□□□□□ -2.46
RNU4-88P-201ENST00000411220 C15orf39Q6ZRI6 1047 aa-0.32□□□□□ -2.46
RNU4-88P-201ENST00000411220 BRAPQ7Z569 592 aa-0.32□□□□□ -2.46
RNU4-88P-201ENST00000411220 CDH24Q86UP0 819 aa-0.32□□□□□ -2.46
RNU4-88P-201ENST00000411220 REPS2Q8NFH8 660 aa-0.32□□□□□ -2.46
RNU4-88P-201ENST00000411220 SCG3Q8WXD2 468 aaKnown RBP-0.32□□□□□ -2.46
RNU4-88P-201ENST00000411220 PIK3R5Q8WYR1 880 aa-0.32□□□□□ -2.46
RNU4-88P-201ENST00000411220 LMLNQ96KR4 655 aa-0.32□□□□□ -2.46
RNU4-88P-201ENST00000411220 EHMT1Q9H9B1 1298 aa-0.32□□□□□ -2.46
RNU4-88P-201ENST00000411220 KIAA1586Q9HCI6 787 aa-0.32□□□□□ -2.46
RNU4-88P-201ENST00000411220 ALG13Q9NP73 1137 aaKnown RBP-0.32□□□□□ -2.46
RNU4-88P-201ENST00000411220 ELOVL5Q9NYP7 299 aa-0.32□□□□□ -2.46
RNU4-88P-201ENST00000411220 CNTN3Q9P232 1028 aa-0.32□□□□□ -2.46
RNU4-88P-201ENST00000411220 DKK2Q9UBU2 259 aa-0.32□□□□□ -2.46
RNU4-88P-201ENST00000411220 KCNH3Q9ULD8 1083 aa-0.32□□□□□ -2.46
RNU4-88P-201ENST00000411220 OAZ3Q9UMX2 235 aa-0.32□□□□□ -2.46
RNU4-88P-201ENST00000411220 RUSC2Q8N2Y8 1516 aa-0.33□□□□□ -2.46
RNU4-88P-201ENST00000411220 KMT2CQ8NEZ4 4911 aaKnown RBP-0.33□□□□□ -2.46
RNU4-88P-201ENST00000411220 ATRXP46100 2492 aa-0.33□□□□□ -2.46
RNU4-88P-201ENST00000411220 A0A1W2PQJ5 194 aa-0.33□□□□□ -2.46
RNU4-88P-201ENST00000411220 TMEM82A0PJX8 343 aa-0.33□□□□□ -2.46
RNU4-88P-201ENST00000411220 CAPN14A8MX76 684 aa-0.33□□□□□ -2.46
RNU4-88P-201ENST00000411220 KRT5P13647 590 aa-0.33□□□□□ -2.46
RNU4-88P-201ENST00000411220 PROK1P58294 105 aa-0.33□□□□□ -2.46
RNU4-88P-201ENST00000411220 KRTAP12-4P60329 112 aa-0.33□□□□□ -2.46
RNU4-88P-201ENST00000411220 FKBP15Q5T1M5 1219 aa-0.33□□□□□ -2.46
RNU4-88P-201ENST00000411220 ZBTB37Q5TC79 503 aa-0.33□□□□□ -2.46
RNU4-88P-201ENST00000411220 BICRALQ6AI39 1079 aa-0.33□□□□□ -2.46
RNU4-88P-201ENST00000411220 DTWD2Q8NBA8 298 aa-0.33□□□□□ -2.46
RNU4-88P-201ENST00000411220 ZNF485Q8NCK3 441 aa-0.33□□□□□ -2.46
RNU4-88P-201ENST00000411220 FCRL2Q96LA5 508 aaPredicted RBP-0.33□□□□□ -2.46
RNU4-88P-201ENST00000411220 WFDC1Q9HC57 220 aa-0.33□□□□□ -2.46
RNU4-88P-201ENST00000411220 MEGF8Q7Z7M0 2845 aa-0.34□□□□□ -2.46
RNU4-88P-201ENST00000411220 A0A096LPE4 126 aa-0.34□□□□□ -2.46
RNU4-88P-201ENST00000411220 A0A1W2PPZ6 126 aa-0.34□□□□□ -2.46
RNU4-88P-201ENST00000411220 A0A1W2PQ27 194 aa-0.34□□□□□ -2.46
RNU4-88P-201ENST00000411220 A0A1W2PQ64 194 aa-0.34□□□□□ -2.46
RNU4-88P-201ENST00000411220 A0A1W2PQC6 194 aa-0.34□□□□□ -2.46
RNU4-88P-201ENST00000411220 A0A1W2PQD8 194 aa-0.34□□□□□ -2.46
RNU4-88P-201ENST00000411220 FAM90A10PA6NDY2 464 aa-0.34□□□□□ -2.46
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms