RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 CATSPER2Q96P56 530 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 KRT82Q9NSB4 513 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 IFNB1P01574 187 aa13.92□□□□□ -0.18
COL6A3-206ENST00000409809 NLRP14Q86W24 1093 aa13.92□□□□□ -0.18
COL6A3-206ENST00000409809 CARSP49589 748 aaKnown RBP13.92□□□□□ -0.18
COL6A3-206ENST00000409809 MORF4L2Q15014 288 aa13.92□□□□□ -0.18
COL6A3-206ENST00000409809 TRIM50Q86XT4 487 aa13.92□□□□□ -0.18
COL6A3-206ENST00000409809 TRIM8Q9BZR9 551 aa13.92□□□□□ -0.18
COL6A3-206ENST00000409809 MIF4GDA9UHW6 222 aaKnown RBP13.92□□□□□ -0.18
COL6A3-206ENST00000409809 NUGGCQ68CJ6 796 aa13.92□□□□□ -0.18
COL6A3-206ENST00000409809 MT-ND3P03897 115 aa13.92□□□□□ -0.18
COL6A3-206ENST00000409809 CORO7P57737 925 aa13.92□□□□□ -0.18
COL6A3-206ENST00000409809 PDE1BQ01064 536 aa13.92□□□□□ -0.18
COL6A3-206ENST00000409809 SBNO1A3KN83 1393 aa13.92□□□□□ -0.18
COL6A3-206ENST00000409809 DHX38Q92620 1227 aaKnown RBP13.92□□□□□ -0.18
COL6A3-206ENST00000409809 HDAC11Q96DB2 347 aa13.92□□□□□ -0.18
COL6A3-206ENST00000409809 LRRC2Q9BYS8 371 aa13.92□□□□□ -0.18
COL6A3-206ENST00000409809 CCPG1Q9ULG6 757 aa13.92□□□□□ -0.18
COL6A3-206ENST00000409809 GTPBP10A4D1E9 387 aaKnown RBP13.92□□□□□ -0.18
COL6A3-206ENST00000409809 PPP4R3CPQ6ZMV5 832 aa13.92□□□□□ -0.18
COL6A3-206ENST00000409809 ACAD11Q709F0 780 aa13.92□□□□□ -0.18
COL6A3-206ENST00000409809 ZNF804AQ7Z570 1209 aa13.92□□□□□ -0.18
COL6A3-206ENST00000409809 PRPF38AQ8NAV1 312 aaKnown RBP13.92□□□□□ -0.18
COL6A3-206ENST00000409809 TBKBP1A7MCY6 615 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 RAD23BP54727 409 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 SLFN12Q8IYM2 578 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 MRRFQ96E11 262 aaKnown RBP13.91□□□□□ -0.18
COL6A3-206ENST00000409809 C1orf112Q9NSG2 853 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 PRAG1Q86YV5 1406 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 NVLO15381 856 aaKnown RBP13.91□□□□□ -0.18
COL6A3-206ENST00000409809 ECE1P42892 770 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 SCYL1Q96KG9 808 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 C19orf44Q9H6X5 657 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 KRT38O76015 456 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 TBC1D22AQ8WUA7 517 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 MAML1Q92585 1016 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 RWDD2AQ9UIY3 292 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 GMEB1Q9Y692 573 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 PBRM1Q86U86 1689 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 CLASP1Q7Z460 1538 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 GOLGA8IPA6NC78 632 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 KRT7P08729 469 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 CADPS2Q86UW7 1296 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 SNX14Q9Y5W7 946 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 VIRMAQ69YN4 1812 aaKnown RBP13.91□□□□□ -0.18
COL6A3-206ENST00000409809 ESYT2A0FGR8 921 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 ZBED6P86452 979 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 EHHADHQ08426 723 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 PDIK1LQ8N165 341 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 MAGOHBQ96A72 148 aaKnown RBP13.91□□□□□ -0.18
COL6A3-206ENST00000409809 SYNMO15061 1565 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 CYP7A1P22680 504 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 CDC37Q16543 378 aaPredicted RBP13.91□□□□□ -0.18
COL6A3-206ENST00000409809 RFWD2Q8NHY2 731 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 ANAPC5Q9UJX4 755 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 EXOC3O60645 756 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 COPB1P53618 953 aaKnown RBP13.91□□□□□ -0.18
COL6A3-206ENST00000409809 NUDT16Q96DE0 195 aaKnown RBP13.91□□□□□ -0.18
COL6A3-206ENST00000409809 CCDC134Q9H6E4 229 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 VAT1LQ9HCJ6 419 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 SUN2Q9UH99 717 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 SBNO2Q9Y2G9 1366 aa13.91□□□□□ -0.18
COL6A3-206ENST00000409809 TMEM191CA6NGB0 347 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 GGPS1O95749 300 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 TMEM191BP0C7N4 346 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 CNGA2Q16280 664 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 KLHL38Q2WGJ6 581 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 HERC4Q5GLZ8 1057 aaPredicted RBP13.9□□□□□ -0.18
COL6A3-206ENST00000409809 TRAF7Q6Q0C0 670 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 ZNF713Q8N859 430 aaPredicted RBP13.9□□□□□ -0.18
COL6A3-206ENST00000409809 ARHGEF35A5YM69 484 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 REXO1Q8N1G1 1221 aaKnown RBP13.9□□□□□ -0.18
COL6A3-206ENST00000409809 TTC1Q99614 292 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 EIF3HO15372 352 aaKnown RBP eCLIP13.9□□□□□ -0.18
COL6A3-206ENST00000409809 SNUPNO95149 360 aaKnown RBP13.9□□□□□ -0.18
COL6A3-206ENST00000409809 CPP00450 1065 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 KCNA3P22001 575 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 NUP107P57740 925 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 ST13P50502 369 aaKnown RBP13.9□□□□□ -0.18
COL6A3-206ENST00000409809 RASSF7Q02833 373 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 PNOCQ13519 176 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 RHOT2Q8IXI1 618 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 U2AF1L4Q8WU68 220 aaKnown RBP13.9□□□□□ -0.18
COL6A3-206ENST00000409809 MRPL47Q9HD33 250 aaKnown RBP13.9□□□□□ -0.18
COL6A3-206ENST00000409809 ABCB6Q9NP58 842 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 INTUQ9ULD6 942 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 ZBBXA8MT70 800 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 TNNC2P02585 160 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 GOLGA8FQ08AF8 430 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 GOLGA8DPQ0D2H9 430 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 TSHZ3Q63HK5 1081 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 DIS3L2Q8IYB7 885 aaKnown RBP13.9□□□□□ -0.18
COL6A3-206ENST00000409809 DDHD1Q8NEL9 900 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 BRD8Q9H0E9 1235 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 PYCARDQ9ULZ3 195 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 CAB39Q9Y376 341 aaPredicted RBP13.9□□□□□ -0.18
COL6A3-206ENST00000409809 RWDD3Q9Y3V2 267 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 SEC31AO94979 1220 aaKnown RBP13.9□□□□□ -0.18
COL6A3-206ENST00000409809 CYTH1Q15438 398 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 SGO2Q562F6 1265 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms