RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 THSD7BQ9C0I4 1608 aa6.55□□□□□ -1.36
CLK1-202ENST00000409403 SLITRK5O94991 958 aa6.54□□□□□ -1.36
CLK1-202ENST00000409403 ETV3P41162 512 aa6.54□□□□□ -1.36
CLK1-202ENST00000409403 CHRNA4P43681 627 aa6.54□□□□□ -1.36
CLK1-202ENST00000409403 ZNF445P59923 1031 aa6.54□□□□□ -1.36
CLK1-202ENST00000409403 GABPB1Q06547 395 aaPredicted RBP6.54□□□□□ -1.36
CLK1-202ENST00000409403 KIAA2012Q0VF49 1180 aa6.54□□□□□ -1.36
CLK1-202ENST00000409403 KLHL40Q2TBA0 621 aa6.54□□□□□ -1.36
CLK1-202ENST00000409403 TDRD10Q5VZ19 366 aaKnown RBP6.54□□□□□ -1.36
CLK1-202ENST00000409403 PAOXQ6QHF9 649 aa6.54□□□□□ -1.36
CLK1-202ENST00000409403 PPFIBP1Q86W92 1011 aa6.54□□□□□ -1.36
CLK1-202ENST00000409403 SMC5Q8IY18 1101 aa6.54□□□□□ -1.36
CLK1-202ENST00000409403 PDLIM2Q96JY6 352 aa6.54□□□□□ -1.36
CLK1-202ENST00000409403 RNPC3Q96LT9 517 aaKnown RBP6.54□□□□□ -1.36
CLK1-202ENST00000409403 FEZ1Q99689 392 aa6.54□□□□□ -1.36
CLK1-202ENST00000409403 POLR3GLQ9BT43 218 aa6.54□□□□□ -1.36
CLK1-202ENST00000409403 PLEKHG2Q9H7P9 1386 aa6.54□□□□□ -1.36
CLK1-202ENST00000409403 TIAM2Q8IVF5 1701 aa6.53□□□□□ -1.36
CLK1-202ENST00000409403 C9IYK1 514 aa6.53□□□□□ -1.36
CLK1-202ENST00000409403 SUSD5O60279 629 aa6.53□□□□□ -1.36
CLK1-202ENST00000409403 TP53P04637 393 aaPredicted RBP6.53□□□□□ -1.36
CLK1-202ENST00000409403 IRX3P78415 501 aaPredicted RBP6.53□□□□□ -1.36
CLK1-202ENST00000409403 CDK5R2Q13319 367 aa6.53□□□□□ -1.36
CLK1-202ENST00000409403 GPAT2Q6NUI2 795 aa6.53□□□□□ -1.36
CLK1-202ENST00000409403 CLEC17AQ6ZS10 378 aa6.53□□□□□ -1.36
CLK1-202ENST00000409403 BEND4Q6ZU67 534 aa6.53□□□□□ -1.36
CLK1-202ENST00000409403 CD163Q86VB7 1156 aa6.53□□□□□ -1.36
CLK1-202ENST00000409403 SKAP1Q86WV1 359 aa6.53□□□□□ -1.36
CLK1-202ENST00000409403 LILRB2Q8N423 598 aa6.53□□□□□ -1.36
CLK1-202ENST00000409403 PDCL2Q8N4E4 241 aa6.53□□□□□ -1.36
CLK1-202ENST00000409403 SSBP4Q9BWG4 385 aaPredicted RBP6.53□□□□□ -1.36
CLK1-202ENST00000409403 KRTAP4-8Q9BYQ9 185 aa6.53□□□□□ -1.36
CLK1-202ENST00000409403 EPN3Q9H201 632 aa6.53□□□□□ -1.36
CLK1-202ENST00000409403 C1GALT1Q9NS00 363 aa6.53□□□□□ -1.36
CLK1-202ENST00000409403 FAM86C1Q9NVL1 165 aa6.53□□□□□ -1.36
CLK1-202ENST00000409403 KIF3AQ9Y496 699 aa6.53□□□□□ -1.36
CLK1-202ENST00000409403 CD2APQ9Y5K6 639 aa6.53□□□□□ -1.36
CLK1-202ENST00000409403 ARFGEF1Q9Y6D6 1849 aa6.53□□□□□ -1.36
CLK1-202ENST00000409403 USP54Q70EL1 1684 aa6.52□□□□□ -1.37
CLK1-202ENST00000409403 NAT2P11245 290 aa6.52□□□□□ -1.37
CLK1-202ENST00000409403 ZNF143P52747 638 aaPredicted RBP6.52□□□□□ -1.37
CLK1-202ENST00000409403 RNF4P78317 190 aa6.52□□□□□ -1.37
CLK1-202ENST00000409403 SSRP1Q08945 709 aaKnown RBP6.52□□□□□ -1.37
CLK1-202ENST00000409403 RAB3GAP1Q15042 981 aa6.52□□□□□ -1.37
CLK1-202ENST00000409403 C20orf194Q5TEA3 1177 aa6.52□□□□□ -1.37
CLK1-202ENST00000409403 SPATC1Q76KD6 591 aa6.52□□□□□ -1.37
CLK1-202ENST00000409403 CDH24Q86UP0 819 aa6.52□□□□□ -1.37
CLK1-202ENST00000409403 GIMAP7Q8NHV1 300 aa6.52□□□□□ -1.37
CLK1-202ENST00000409403 RIN3Q8TB24 985 aa6.52□□□□□ -1.37
CLK1-202ENST00000409403 SH3TC2Q8TF17 1288 aa6.52□□□□□ -1.37
CLK1-202ENST00000409403 DCAF5Q96JK2 942 aa6.52□□□□□ -1.37
CLK1-202ENST00000409403 ZNF512BQ96KM6 892 aaPredicted RBP6.52□□□□□ -1.37
CLK1-202ENST00000409403 KREMEN1Q96MU8 473 aa6.52□□□□□ -1.37
CLK1-202ENST00000409403 HAUS7Q99871 368 aa6.52□□□□□ -1.37
CLK1-202ENST00000409403 MKRN2Q9H000 416 aaKnown RBP6.52□□□□□ -1.37
CLK1-202ENST00000409403 PFDN2Q9UHV9 154 aa6.52□□□□□ -1.37
CLK1-202ENST00000409403 ZMYM5Q9UJ78 669 aa6.52□□□□□ -1.37
CLK1-202ENST00000409403 KAT6BQ8WYB5 2073 aa6.52□□□□□ -1.37
CLK1-202ENST00000409403 C1QTNF9BB2RNN3 333 aa6.52□□□□□ -1.37
CLK1-202ENST00000409403 HSD3B2P26439 372 aa6.52□□□□□ -1.37
CLK1-202ENST00000409403 DDIT3P35638 169 aa6.52□□□□□ -1.37
CLK1-202ENST00000409403 SLC10A6Q3KNW5 377 aa6.52□□□□□ -1.37
CLK1-202ENST00000409403 AXDND1Q5T1B0 1012 aaPredicted RBP6.52□□□□□ -1.37
CLK1-202ENST00000409403 NBPF12Q5TAG4 269 aaPredicted RBP6.52□□□□□ -1.37
CLK1-202ENST00000409403 DUSP27Q5VZP5 1158 aa6.52□□□□□ -1.37
CLK1-202ENST00000409403 HEATR6Q6AI08 1181 aaKnown RBP6.52□□□□□ -1.37
CLK1-202ENST00000409403 CLEC10AQ8IUN9 316 aa6.52□□□□□ -1.37
CLK1-202ENST00000409403 CCDC144CPQ8IYA2 1237 aa6.52□□□□□ -1.37
CLK1-202ENST00000409403 TOP6BLQ8N6T0 577 aa6.52□□□□□ -1.37
CLK1-202ENST00000409403 RNF141Q8WVD5 230 aa6.52□□□□□ -1.37
CLK1-202ENST00000409403 C22orf23Q9BZE7 217 aa6.52□□□□□ -1.37
CLK1-202ENST00000409403 KIF13BQ9NQT8 1826 aa6.51□□□□□ -1.37
CLK1-202ENST00000409403 A0A0C4DFX4 3053 aa6.51□□□□□ -1.37
CLK1-202ENST00000409403 COL18A1P39060 1754 aa6.51□□□□□ -1.37
CLK1-202ENST00000409403 ANKRD34BA5PLL1 514 aa6.51□□□□□ -1.37
CLK1-202ENST00000409403 IQCA1LA6NCM1 817 aa6.51□□□□□ -1.37
CLK1-202ENST00000409403 ENPP3O14638 875 aa6.51□□□□□ -1.37
CLK1-202ENST00000409403 EPHX1P07099 455 aa6.51□□□□□ -1.37
CLK1-202ENST00000409403 CHAF1AQ13111 956 aaPredicted RBP6.51□□□□□ -1.37
CLK1-202ENST00000409403 ZNF771Q7L3S4 317 aaPredicted RBP6.51□□□□□ -1.37
CLK1-202ENST00000409403 GAS2L3Q86XJ1 694 aa6.51□□□□□ -1.37
CLK1-202ENST00000409403 MARCH10Q8NA82 808 aaPredicted RBP6.51□□□□□ -1.37
CLK1-202ENST00000409403 TNPO1Q92973 898 aaKnown RBP6.51□□□□□ -1.37
CLK1-202ENST00000409403 VWCEQ96DN2 955 aa6.51□□□□□ -1.37
CLK1-202ENST00000409403 FAM83CQ9BQN1 747 aa6.51□□□□□ -1.37
CLK1-202ENST00000409403 DUSP23Q9BVJ7 150 aa6.51□□□□□ -1.37
CLK1-202ENST00000409403 ASPNQ9BXN1 380 aa6.51□□□□□ -1.37
CLK1-202ENST00000409403 RRP7BPQ9NSQ0 103 aa6.51□□□□□ -1.37
CLK1-202ENST00000409403 DIAPH3Q9NSV4 1193 aa6.51□□□□□ -1.37
CLK1-202ENST00000409403 BCL9O00512 1426 aa6.5□□□□□ -1.37
CLK1-202ENST00000409403 ITSN1Q15811 1721 aa6.5□□□□□ -1.37
CLK1-202ENST00000409403 DIAPH1O60610 1272 aaKnown RBP6.5□□□□□ -1.37
CLK1-202ENST00000409403 CYP7A1P22680 504 aa6.5□□□□□ -1.37
CLK1-202ENST00000409403 WDR43Q15061 677 aaKnown RBP eCLIP6.5□□□□□ -1.37
CLK1-202ENST00000409403 TCEAL1Q15170 157 aa6.5□□□□□ -1.37
CLK1-202ENST00000409403 ANKRD39Q53RE8 183 aa6.5□□□□□ -1.37
CLK1-202ENST00000409403 C2orf27AQ580R0 203 aa6.5□□□□□ -1.37
CLK1-202ENST00000409403 EGFLAMQ63HQ2 1017 aa6.5□□□□□ -1.37
CLK1-202ENST00000409403 DCAF15Q66K64 600 aa6.5□□□□□ -1.37
CLK1-202ENST00000409403 THAP3Q8WTV1 239 aaPredicted RBP6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms