RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 FAM86C2PA6NEL3 165 aa18.9■□□□□ 0.62
CUX2-202ENST00000397643 ERVK-21P61565 698 aa18.9■□□□□ 0.62
CUX2-202ENST00000397643 LY6KQ17RY6 165 aa18.9■□□□□ 0.62
CUX2-202ENST00000397643 TBC1D5Q92609 795 aa18.9■□□□□ 0.62
CUX2-202ENST00000397643 FAM227BQ96M60 508 aa18.9■□□□□ 0.62
CUX2-202ENST00000397643 CPVLQ9H3G5 476 aa18.9■□□□□ 0.62
CUX2-202ENST00000397643 HELLSQ9NRZ9 838 aa18.9■□□□□ 0.62
CUX2-202ENST00000397643 GTF2IRD1Q9UHL9 959 aa18.9■□□□□ 0.62
CUX2-202ENST00000397643 A0A0D9SFI3 127 aa18.89■□□□□ 0.61
CUX2-202ENST00000397643 LINC01553A4QN01 128 aa18.89■□□□□ 0.61
CUX2-202ENST00000397643 B4DLN1 442 aa18.89■□□□□ 0.61
CUX2-202ENST00000397643 PI4K2BG5E9Z4 385 aa18.89■□□□□ 0.61
CUX2-202ENST00000397643 GH1P01241 217 aa18.89■□□□□ 0.61
CUX2-202ENST00000397643 CKBP12277 381 aa18.89■□□□□ 0.61
CUX2-202ENST00000397643 MRPL12P52815 198 aaKnown RBP18.89■□□□□ 0.61
CUX2-202ENST00000397643 USH1GQ495M9 461 aa18.89■□□□□ 0.61
CUX2-202ENST00000397643 SYTL5Q8TDW5 730 aaPredicted RBP18.89■□□□□ 0.61
CUX2-202ENST00000397643 WNT8BQ93098 351 aa18.89■□□□□ 0.61
CUX2-202ENST00000397643 TTC14Q96N46 770 aa18.89■□□□□ 0.61
CUX2-202ENST00000397643 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP18.88■□□□□ 0.61
CUX2-202ENST00000397643 PARNO95453 639 aaKnown RBP18.88■□□□□ 0.61
CUX2-202ENST00000397643 GOLGA8HP0CJ92 632 aa18.88■□□□□ 0.61
CUX2-202ENST00000397643 HSPD1P10809 573 aaKnown RBP18.88■□□□□ 0.61
CUX2-202ENST00000397643 HAND2P61296 217 aa18.88■□□□□ 0.61
CUX2-202ENST00000397643 MBTPS1Q14703 1052 aa18.88■□□□□ 0.61
CUX2-202ENST00000397643 TRIM71Q2Q1W2 868 aaKnown RBP18.88■□□□□ 0.61
CUX2-202ENST00000397643 SEPT14Q6ZU15 432 aa18.88■□□□□ 0.61
CUX2-202ENST00000397643 ZNF589Q86UQ0 364 aaPredicted RBP18.88■□□□□ 0.61
CUX2-202ENST00000397643 TBC1D10CQ8IV04 446 aa18.88■□□□□ 0.61
CUX2-202ENST00000397643 EVI5LQ96CN4 794 aa18.88■□□□□ 0.61
CUX2-202ENST00000397643 TAAR1Q96RJ0 339 aa18.88■□□□□ 0.61
CUX2-202ENST00000397643 RAD9AQ99638 391 aa18.88■□□□□ 0.61
CUX2-202ENST00000397643 ZBED2Q9BTP6 218 aa18.88■□□□□ 0.61
CUX2-202ENST00000397643 UBE2ZQ9H832 354 aaPredicted RBP18.88■□□□□ 0.61
CUX2-202ENST00000397643 HDAC6Q9UBN7 1215 aa18.88■□□□□ 0.61
CUX2-202ENST00000397643 MTUS1Q9ULD2 1270 aa18.88■□□□□ 0.61
CUX2-202ENST00000397643 ABHD14A-ACY1A0A1B0GW23 586 aa18.87■□□□□ 0.61
CUX2-202ENST00000397643 HAS3O00219 553 aa18.87■□□□□ 0.61
CUX2-202ENST00000397643 F2P00734 622 aa18.87■□□□□ 0.61
CUX2-202ENST00000397643 MKRN4PQ13434 485 aaPredicted RBP18.87■□□□□ 0.61
CUX2-202ENST00000397643 CDC37Q16543 378 aaPredicted RBP18.87■□□□□ 0.61
CUX2-202ENST00000397643 GPATCH4Q5T3I0 446 aaKnown RBP18.87■□□□□ 0.61
CUX2-202ENST00000397643 EMID1Q96A84 441 aaPredicted RBP18.87■□□□□ 0.61
CUX2-202ENST00000397643 TGS1Q96RS0 853 aaKnown RBP18.87■□□□□ 0.61
CUX2-202ENST00000397643 UBA5Q9GZZ9 404 aa18.87■□□□□ 0.61
CUX2-202ENST00000397643 MAF1Q9H063 256 aa18.87■□□□□ 0.61
CUX2-202ENST00000397643 CASTP20810 708 aaKnown RBP18.86■□□□□ 0.61
CUX2-202ENST00000397643 PSEN2P49810 448 aa18.86■□□□□ 0.61
CUX2-202ENST00000397643 HIC1Q14526 733 aa18.86■□□□□ 0.61
CUX2-202ENST00000397643 MCMDC2Q4G0Z9 681 aa18.86■□□□□ 0.61
CUX2-202ENST00000397643 CHST3Q7LGC8 479 aa18.86■□□□□ 0.61
CUX2-202ENST00000397643 GADD45GIP1Q8TAE8 222 aaPredicted RBP18.86■□□□□ 0.61
CUX2-202ENST00000397643 DDX41Q9UJV9 622 aaKnown RBP18.86■□□□□ 0.61
CUX2-202ENST00000397643 ABCB11O95342 1321 aa18.85■□□□□ 0.61
CUX2-202ENST00000397643 NEDD4P46934 1319 aa18.85■□□□□ 0.61
CUX2-202ENST00000397643 ZNF286BP0CG31 522 aa18.85■□□□□ 0.61
CUX2-202ENST00000397643 PTK7Q13308 1070 aa18.85■□□□□ 0.61
CUX2-202ENST00000397643 DGKDQ16760 1214 aa18.85■□□□□ 0.61
CUX2-202ENST00000397643 LEXMQ3ZCV2 418 aa18.85■□□□□ 0.61
CUX2-202ENST00000397643 FAM178BQ8IXR5 827 aa18.85■□□□□ 0.61
CUX2-202ENST00000397643 NSUN6Q8TEA1 469 aaKnown RBP18.85■□□□□ 0.61
CUX2-202ENST00000397643 IWS1Q96ST2 819 aa18.85■□□□□ 0.61
CUX2-202ENST00000397643 MICAL3Q7RTP6 2002 aa18.84■□□□□ 0.61
CUX2-202ENST00000397643 EFCAB14O75071 495 aa18.84■□□□□ 0.61
CUX2-202ENST00000397643 PCP11498 1178 aaKnown RBP18.84■□□□□ 0.61
CUX2-202ENST00000397643 HOXD8P13378 290 aaPredicted RBP18.84■□□□□ 0.61
CUX2-202ENST00000397643 PDE1AP54750 535 aa18.84■□□□□ 0.61
CUX2-202ENST00000397643 ZNF200P98182 395 aaPredicted RBP18.84■□□□□ 0.61
CUX2-202ENST00000397643 MFSD10Q14728 455 aa18.84■□□□□ 0.61
CUX2-202ENST00000397643 STXBP2Q15833 593 aa18.84■□□□□ 0.61
CUX2-202ENST00000397643 ZNF618Q5T7W0 954 aa18.84■□□□□ 0.61
CUX2-202ENST00000397643 C7orf31Q8N865 590 aa18.84■□□□□ 0.61
CUX2-202ENST00000397643 PPTC7Q8NI37 304 aa18.84■□□□□ 0.61
CUX2-202ENST00000397643 RMDN3Q96TC7 470 aa18.84■□□□□ 0.61
CUX2-202ENST00000397643 ZKSCAN3Q9BRR0 538 aa18.84■□□□□ 0.61
CUX2-202ENST00000397643 ALG1Q9BT22 464 aa18.84■□□□□ 0.61
CUX2-202ENST00000397643 CCDC171Q6TFL3 1326 aa18.83■□□□□ 0.61
CUX2-202ENST00000397643 KCNA5P22460 613 aa18.83■□□□□ 0.6
CUX2-202ENST00000397643 NMIQ13287 307 aaPredicted RBP18.83■□□□□ 0.6
CUX2-202ENST00000397643 IKBKEQ14164 716 aa18.83■□□□□ 0.6
CUX2-202ENST00000397643 KIAA0753Q2KHM9 967 aa18.83■□□□□ 0.6
CUX2-202ENST00000397643 FAM117BQ6P1L5 589 aa18.83■□□□□ 0.6
CUX2-202ENST00000397643 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.83■□□□□ 0.6
CUX2-202ENST00000397643 MFSD6Q6ZSS7 791 aa18.83■□□□□ 0.6
CUX2-202ENST00000397643 ADGRF4Q8IZF3 695 aa18.83■□□□□ 0.6
CUX2-202ENST00000397643 GJD3Q8N144 294 aa18.83■□□□□ 0.6
CUX2-202ENST00000397643 SP7Q8TDD2 431 aaPredicted RBP18.83■□□□□ 0.6
CUX2-202ENST00000397643 C17orf80Q9BSJ5 609 aa18.83■□□□□ 0.6
CUX2-202ENST00000397643 KATNAL1Q9BW62 490 aa18.83■□□□□ 0.6
CUX2-202ENST00000397643 LAMA4Q16363 1823 aa18.83■□□□□ 0.6
CUX2-202ENST00000397643 OPLAHO14841 1288 aa18.82■□□□□ 0.6
CUX2-202ENST00000397643 LGR5O75473 907 aa18.82■□□□□ 0.6
CUX2-202ENST00000397643 RGS20O76081 388 aa18.82■□□□□ 0.6
CUX2-202ENST00000397643 IL9P15248 144 aa18.82■□□□□ 0.6
CUX2-202ENST00000397643 EIF2AK2P19525 551 aaKnown RBP18.82■□□□□ 0.6
CUX2-202ENST00000397643 HTRA4P83105 476 aaPredicted RBP18.82■□□□□ 0.6
CUX2-202ENST00000397643 QRICH1Q2TAL8 776 aa18.82■□□□□ 0.6
CUX2-202ENST00000397643 ERICH6BQ5W0A0 696 aa18.82■□□□□ 0.6
CUX2-202ENST00000397643 DGKHQ86XP1 1220 aa18.82■□□□□ 0.6
CUX2-202ENST00000397643 PXMP2Q9NR77 195 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms