RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 GPHNQ9NQX3 736 aaPredicted RBP12.03□□□□□ -0.48
NEDD8-202ENST00000396828 TANC1Q9C0D5 1861 aa12.02□□□□□ -0.48
NEDD8-202ENST00000396828 EPOPA6NHQ4 379 aa12.02□□□□□ -0.49
NEDD8-202ENST00000396828 NKRFO15226 690 aaKnown RBP eCLIP12.02□□□□□ -0.49
NEDD8-202ENST00000396828 MMP3P08254 477 aa12.02□□□□□ -0.49
NEDD8-202ENST00000396828 SUPT20HL2P0C7V6 817 aa12.02□□□□□ -0.49
NEDD8-202ENST00000396828 ATP2A2P16615 1042 aaKnown RBP12.02□□□□□ -0.49
NEDD8-202ENST00000396828 TCTN1Q2MV58 587 aa12.02□□□□□ -0.49
NEDD8-202ENST00000396828 TJAP1Q5JTD0 557 aa12.02□□□□□ -0.49
NEDD8-202ENST00000396828 GDF6Q6KF10 455 aaPredicted RBP12.02□□□□□ -0.49
NEDD8-202ENST00000396828 NFRKBQ6P4R8 1299 aa12.02□□□□□ -0.49
NEDD8-202ENST00000396828 TMCO2Q7Z6W1 182 aaPredicted RBP12.02□□□□□ -0.49
NEDD8-202ENST00000396828 IQCA1Q86XH1 822 aa12.02□□□□□ -0.49
NEDD8-202ENST00000396828 DSCC1Q9BVC3 393 aa12.02□□□□□ -0.49
NEDD8-202ENST00000396828 USP26Q9BXU7 913 aa12.02□□□□□ -0.49
NEDD8-202ENST00000396828 SENP2Q9HC62 589 aa12.02□□□□□ -0.49
NEDD8-202ENST00000396828 DDX41Q9UJV9 622 aaKnown RBP12.02□□□□□ -0.49
NEDD8-202ENST00000396828 TAF6LQ9Y6J9 622 aa12.02□□□□□ -0.49
NEDD8-202ENST00000396828 ABCB11O95342 1321 aa12.02□□□□□ -0.49
NEDD8-202ENST00000396828 SORBS3O60504 671 aa12.01□□□□□ -0.49
NEDD8-202ENST00000396828 CA3P07451 260 aa12.01□□□□□ -0.49
NEDD8-202ENST00000396828 PARP1P09874 1014 aaKnown RBP12.01□□□□□ -0.49
NEDD8-202ENST00000396828 EIF2AK2P19525 551 aaKnown RBP12.01□□□□□ -0.49
NEDD8-202ENST00000396828 HIC1Q14526 733 aa12.01□□□□□ -0.49
NEDD8-202ENST00000396828 SEC23AQ15436 765 aa12.01□□□□□ -0.49
NEDD8-202ENST00000396828 IMMTQ16891 758 aaKnown RBP12.01□□□□□ -0.49
NEDD8-202ENST00000396828 ASPRV1Q53RT3 343 aa12.01□□□□□ -0.49
NEDD8-202ENST00000396828 PPP2R2DQ66LE6 453 aa12.01□□□□□ -0.49
NEDD8-202ENST00000396828 KRT40Q6A162 431 aa12.01□□□□□ -0.49
NEDD8-202ENST00000396828 FBXO11Q86XK2 927 aa12.01□□□□□ -0.49
NEDD8-202ENST00000396828 DHX38Q92620 1227 aaKnown RBP12.01□□□□□ -0.49
NEDD8-202ENST00000396828 ZFP91Q96JP5 570 aaPredicted RBP12.01□□□□□ -0.49
NEDD8-202ENST00000396828 TBC1D32Q96NH3 1257 aa12.01□□□□□ -0.49
NEDD8-202ENST00000396828 RMDN3Q96TC7 470 aa12.01□□□□□ -0.49
NEDD8-202ENST00000396828 MTIF3Q9H2K0 278 aaKnown RBP12.01□□□□□ -0.49
NEDD8-202ENST00000396828 PNMA2Q9UL42 364 aa12.01□□□□□ -0.49
NEDD8-202ENST00000396828 PCDHA11Q9Y5I1 949 aa12.01□□□□□ -0.49
NEDD8-202ENST00000396828 U3KPZ7 1027 aaPredicted RBP12.01□□□□□ -0.49
NEDD8-202ENST00000396828 MYH7BA7E2Y1 1941 aa12.01□□□□□ -0.49
NEDD8-202ENST00000396828 PRRC2BQ5JSZ5 2229 aaKnown RBP12.01□□□□□ -0.49
NEDD8-202ENST00000396828 PITPNM1O00562 1244 aa12□□□□□ -0.49
NEDD8-202ENST00000396828 DHX16O60231 1041 aaKnown RBP12□□□□□ -0.49
NEDD8-202ENST00000396828 KPNA6O60684 536 aa12□□□□□ -0.49
NEDD8-202ENST00000396828 RGS20O76081 388 aa12□□□□□ -0.49
NEDD8-202ENST00000396828 CFBP00751 764 aa12□□□□□ -0.49
NEDD8-202ENST00000396828 GH1P01241 217 aa12□□□□□ -0.49
NEDD8-202ENST00000396828 RBM25P49756 843 aaKnown RBP12□□□□□ -0.49
NEDD8-202ENST00000396828 STXBP2Q15833 593 aa12□□□□□ -0.49
NEDD8-202ENST00000396828 PTGISQ16647 500 aa12□□□□□ -0.49
NEDD8-202ENST00000396828 NSUN6Q8TEA1 469 aaKnown RBP12□□□□□ -0.49
NEDD8-202ENST00000396828 WNT8BQ93098 351 aa12□□□□□ -0.49
NEDD8-202ENST00000396828 MTMR8Q96EF0 704 aa12□□□□□ -0.49
NEDD8-202ENST00000396828 MPHOSPH6Q99547 160 aaKnown RBP12□□□□□ -0.49
NEDD8-202ENST00000396828 LSG1Q9H089 658 aaKnown RBP12□□□□□ -0.49
NEDD8-202ENST00000396828 BCAS3Q9H6U6 928 aa12□□□□□ -0.49
NEDD8-202ENST00000396828 PXMP2Q9NR77 195 aa12□□□□□ -0.49
NEDD8-202ENST00000396828 MAD2L2Q9UI95 211 aa12□□□□□ -0.49
NEDD8-202ENST00000396828 BAZ2BQ9UIF8 2168 aaKnown RBP12□□□□□ -0.49
NEDD8-202ENST00000396828 TCF20Q9UGU0 1960 aaKnown RBP11.99□□□□□ -0.49
NEDD8-202ENST00000396828 NR3C2P08235 984 aa11.99□□□□□ -0.49
NEDD8-202ENST00000396828 PFKMP08237 780 aa11.99□□□□□ -0.49
NEDD8-202ENST00000396828 HOXA13P31271 388 aaPredicted RBP11.99□□□□□ -0.49
NEDD8-202ENST00000396828 HSD17B4P51659 736 aa11.99□□□□□ -0.49
NEDD8-202ENST00000396828 ZNF200P98182 395 aaPredicted RBP11.99□□□□□ -0.49
NEDD8-202ENST00000396828 SP2Q02086 613 aa11.99□□□□□ -0.49
NEDD8-202ENST00000396828 TFF2Q03403 129 aa11.99□□□□□ -0.49
NEDD8-202ENST00000396828 PTH1RQ03431 593 aa11.99□□□□□ -0.49
NEDD8-202ENST00000396828 PTPN11Q06124 597 aaPredicted RBP11.99□□□□□ -0.49
NEDD8-202ENST00000396828 BRDTQ58F21 947 aaPredicted RBP11.99□□□□□ -0.49
NEDD8-202ENST00000396828 CCDC178Q5BJE1 867 aa11.99□□□□□ -0.49
NEDD8-202ENST00000396828 TMEM67Q5HYA8 995 aa11.99□□□□□ -0.49
NEDD8-202ENST00000396828 IFIT1BQ5T764 474 aaKnown RBP11.99□□□□□ -0.49
NEDD8-202ENST00000396828 RNF20Q5VTR2 975 aa11.99□□□□□ -0.49
NEDD8-202ENST00000396828 ARHGEF16Q5VV41 709 aa11.99□□□□□ -0.49
NEDD8-202ENST00000396828 MCF2L2Q86YR7 1114 aa11.99□□□□□ -0.49
NEDD8-202ENST00000396828 MICALL1Q8N3F8 863 aa11.99□□□□□ -0.49
NEDD8-202ENST00000396828 IL31RAQ8NI17 732 aa11.99□□□□□ -0.49
NEDD8-202ENST00000396828 SYMPKQ92797 1274 aaKnown RBP11.99□□□□□ -0.49
NEDD8-202ENST00000396828 GPKOWQ92917 476 aaPredicted RBP eCLIP11.99□□□□□ -0.49
NEDD8-202ENST00000396828 MAP4K1Q92918 833 aa11.99□□□□□ -0.49
NEDD8-202ENST00000396828 ASB2Q96Q27 587 aa11.99□□□□□ -0.49
NEDD8-202ENST00000396828 KRT23Q9C075 422 aa11.99□□□□□ -0.49
NEDD8-202ENST00000396828 FTOQ9C0B1 505 aaKnown RBP eCLIP11.99□□□□□ -0.497e-7■■□□□ 13.4
NEDD8-202ENST00000396828 THEGQ9P2T0 379 aa11.99□□□□□ -0.49
NEDD8-202ENST00000396828 HDAC6Q9UBN7 1215 aa11.99□□□□□ -0.49
NEDD8-202ENST00000396828 MRPL11Q9Y3B7 192 aaKnown RBP11.99□□□□□ -0.49
NEDD8-202ENST00000396828 NCOR1O75376 2440 aa11.98□□□□□ -0.49
NEDD8-202ENST00000396828 LCHNA4D1U4 455 aa11.98□□□□□ -0.49
NEDD8-202ENST00000396828 PALM3A6NDB9 673 aaPredicted RBP11.98□□□□□ -0.49
NEDD8-202ENST00000396828 B4DLN1 442 aa11.98□□□□□ -0.49
NEDD8-202ENST00000396828 KLRF2D3W0D1 207 aa11.98□□□□□ -0.49
NEDD8-202ENST00000396828 CYTH3O43739 400 aa11.98□□□□□ -0.49
NEDD8-202ENST00000396828 EIF3JO75822 258 aaKnown RBP11.98□□□□□ -0.49
NEDD8-202ENST00000396828 ZNF286BP0CG31 522 aa11.98□□□□□ -0.49
NEDD8-202ENST00000396828 ATXN8OSP0DMR3 200 aa11.98□□□□□ -0.49
NEDD8-202ENST00000396828 RFC2P35250 354 aa11.98□□□□□ -0.49
NEDD8-202ENST00000396828 MRPL12P52815 198 aaKnown RBP11.98□□□□□ -0.49
NEDD8-202ENST00000396828 TAP1Q03518 808 aa11.98□□□□□ -0.49
NEDD8-202ENST00000396828 TRAF7Q6Q0C0 670 aa11.98□□□□□ -0.49
NEDD8-202ENST00000396828 SESTD1Q86VW0 696 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms