RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 SLIT2O94813 1529 aa15.14■□□□□ 0.01
USP49-201ENST00000373006 PAPPAQ13219 1627 aa15.13■□□□□ 0.01
USP49-201ENST00000373006 PALMO75781 387 aa15.13■□□□□ 0.01
USP49-201ENST00000373006 USP17L8P0C7I0 530 aa15.13■□□□□ 0.01
USP49-201ENST00000373006 NR1D1P20393 614 aa15.13■□□□□ 0.01
USP49-201ENST00000373006 RDXP35241 583 aaKnown RBP15.13■□□□□ 0.01
USP49-201ENST00000373006 FNTAP49354 379 aa15.13■□□□□ 0.01
USP49-201ENST00000373006 LRRC41Q15345 812 aa15.13■□□□□ 0.01
USP49-201ENST00000373006 PTPROQ16827 1216 aa15.13■□□□□ 0.01
USP49-201ENST00000373006 MAATS1Q7Z4T9 603 aa15.13■□□□□ 0.01
USP49-201ENST00000373006 CCDC24Q8N4L8 307 aa15.13■□□□□ 0.01
USP49-201ENST00000373006 PRPF38AQ8NAV1 312 aaKnown RBP15.13■□□□□ 0.01
USP49-201ENST00000373006 PIK3R5Q8WYR1 880 aa15.13■□□□□ 0.01
USP49-201ENST00000373006 IL17RBQ9NRM6 502 aa15.13■□□□□ 0.01
USP49-201ENST00000373006 COL1A1P02452 1464 aaPredicted RBP15.13■□□□□ 0.01
USP49-201ENST00000373006 USP17L3A6NCW0 530 aa15.13■□□□□ 0.01
USP49-201ENST00000373006 USP17L4A6NCW7 530 aa15.13■□□□□ 0.01
USP49-201ENST00000373006 CYTH3O43739 400 aa15.13■□□□□ 0.01
USP49-201ENST00000373006 MECOMQ03112 1051 aa15.13■□□□□ 0.01
USP49-201ENST00000373006 IFT88Q13099 833 aa15.13■□□□□ 0.01
USP49-201ENST00000373006 USP17L1Q7RTZ2 530 aa15.13■□□□□ 0.01
USP49-201ENST00000373006 KLHL7Q8IXQ5 586 aa15.13■□□□□ 0.01
USP49-201ENST00000373006 GLIS3Q8NEA6 775 aa15.13■□□□□ 0.01
USP49-201ENST00000373006 DYNLL2Q96FJ2 89 aa15.13■□□□□ 0.01
USP49-201ENST00000373006 EPN3Q9H201 632 aa15.13■□□□□ 0.01
USP49-201ENST00000373006 KANSL2Q9H9L4 492 aa15.13■□□□□ 0.01
USP49-201ENST00000373006 PPANQ9NQ55 473 aaKnown RBP15.13■□□□□ 0.01
USP49-201ENST00000373006 MCM9Q9NXL9 1143 aa15.13■□□□□ 0.01
USP49-201ENST00000373006 ORC4O43929 436 aa15.12■□□□□ 0.01
USP49-201ENST00000373006 IL6STP40189 918 aaPredicted RBP15.12■□□□□ 0.01
USP49-201ENST00000373006 KCNQ4P56696 695 aa15.12■□□□□ 0.01
USP49-201ENST00000373006 HDLBPQ00341 1268 aaKnown RBP15.12■□□□□ 0.01
USP49-201ENST00000373006 EHHADHQ08426 723 aa15.12■□□□□ 0.01
USP49-201ENST00000373006 CAVIN4Q5BKX8 364 aa15.12■□□□□ 0.01
USP49-201ENST00000373006 ZNF473Q8WTR7 871 aaKnown RBP15.12■□□□□ 0.01
USP49-201ENST00000373006 CASKIN2Q8WXE0 1202 aa15.12■□□□□ 0.01
USP49-201ENST00000373006 CCT8L2Q96SF2 557 aa15.12■□□□□ 0.01
USP49-201ENST00000373006 E7EVH7 732 aa15.12■□□□□ 0.01
USP49-201ENST00000373006 KLRK1P26718 216 aa15.12■□□□□ 0.01
USP49-201ENST00000373006 CNNM4Q6P4Q7 775 aa15.12■□□□□ 0.01
USP49-201ENST00000373006 BAP1Q92560 729 aa15.12■□□□□ 0.01
USP49-201ENST00000373006 CABS1Q96KC9 395 aa15.12■□□□□ 0.01
USP49-201ENST00000373006 C7orf25Q9BPX7 421 aa15.12■□□□□ 0.01
USP49-201ENST00000373006 GDF3Q9NR23 364 aa15.12■□□□□ 0.01
USP49-201ENST00000373006 PPP1R37O75864 691 aa15.12■□□□□ 0.01
USP49-201ENST00000373006 LCA5LO95447 670 aa15.12■□□□□ 0.01
USP49-201ENST00000373006 OR52Z1P0C646 297 aa15.12■□□□□ 0.01
USP49-201ENST00000373006 TXKP42681 527 aa15.12■□□□□ 0.01
USP49-201ENST00000373006 CEP85LQ5SZL2 805 aa15.12■□□□□ 0.01
USP49-201ENST00000373006 CENPPQ6IPU0 288 aa15.12■□□□□ 0.01
USP49-201ENST00000373006 KDM7AQ6ZMT4 941 aa15.12■□□□□ 0.01
USP49-201ENST00000373006 OR2W6PQ8NHA6 318 aa15.12■□□□□ 0.01
USP49-201ENST00000373006 NSUN4Q96CB9 384 aaKnown RBP15.12■□□□□ 0.01
USP49-201ENST00000373006 FAM84BQ96KN1 310 aaPredicted RBP15.12■□□□□ 0.01
USP49-201ENST00000373006 SKAP2O75563 359 aaPredicted RBP15.11■□□□□ 0.01
USP49-201ENST00000373006 PRDX5P30044 214 aa15.11■□□□□ 0.01
USP49-201ENST00000373006 USP8P40818 1118 aa15.11■□□□□ 0.01
USP49-201ENST00000373006 PAK2Q13177 524 aa15.11■□□□□ 0.01
USP49-201ENST00000373006 MAD2L2Q9UI95 211 aa15.11■□□□□ 0.01
USP49-201ENST00000373006 STX8Q9UNK0 236 aa15.11■□□□□ 0.01
USP49-201ENST00000373006 PCP11498 1178 aaKnown RBP15.11■□□□□ 0.01
USP49-201ENST00000373006 PTGISQ16647 500 aa15.11■□□□□ 0.01
USP49-201ENST00000373006 MAN2A1Q16706 1144 aa15.11■□□□□ 0.01
USP49-201ENST00000373006 CCDC84Q86UT8 332 aaPredicted RBP15.11■□□□□ 0.01
USP49-201ENST00000373006 RUBCNQ92622 972 aa15.11■□□□□ 0.01
USP49-201ENST00000373006 MMTAG2Q9BU76 263 aaKnown RBP15.11■□□□□ 0.01
USP49-201ENST00000373006 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.11■□□□□ 0.01
USP49-201ENST00000373006 CRNKL1Q9BZJ0 848 aaKnown RBP15.11■□□□□ 0.01
USP49-201ENST00000373006 SH3GLB2Q9NR46 395 aa15.11■□□□□ 0.01
USP49-201ENST00000373006 ZNF804BA4D1E1 1349 aa15.11■□□□□ 0.01
USP49-201ENST00000373006 CICQ96RK0 1608 aaPredicted RBP15.11■□□□□ 0.01
USP49-201ENST00000373006 MYMKA6NI61 221 aa15.1■□□□□ 0.01
USP49-201ENST00000373006 BACH1O14867 736 aa15.1■□□□□ 0.01
USP49-201ENST00000373006 HLTFQ14527 1009 aaKnown RBP eCLIP15.1■□□□□ 0.01
USP49-201ENST00000373006 ASTE1Q2TB18 679 aaPredicted RBP15.1■□□□□ 0.01
USP49-201ENST00000373006 HGSNATQ68CP4 663 aa15.1■□□□□ 0.01
USP49-201ENST00000373006 NLRP14Q86W24 1093 aa15.1■□□□□ 0.01
USP49-201ENST00000373006 ZNF622Q969S3 477 aaKnown RBP eCLIP15.1■□□□□ 0.01
USP49-201ENST00000373006 VAT1LQ9HCJ6 419 aa15.1■□□□□ 0.01
USP49-201ENST00000373006 TFCP2L1Q9NZI6 479 aa15.1■□□□□ 0.01
USP49-201ENST00000373006 PLAAQ9Y263 795 aa15.1■□□□□ 0.01
USP49-201ENST00000373006 STXBP3O00186 592 aa15.1■□□□□ 0.01
USP49-201ENST00000373006 KLRC1P26715 233 aa15.1■□□□□ 0.01
USP49-201ENST00000373006 MDH1P40925 334 aaKnown RBP15.1■□□□□ 0.01
USP49-201ENST00000373006 AMPD3Q01432 767 aa15.1■□□□□ 0.01
USP49-201ENST00000373006 SF3B2Q13435 895 aaKnown RBP15.1■□□□□ 0.01
USP49-201ENST00000373006 GLE1Q53GS7 698 aaKnown RBP15.1■□□□□ 0.01
USP49-201ENST00000373006 PDXDC1Q6P996 788 aa15.1■□□□□ 0.01
USP49-201ENST00000373006 C3orf67Q6ZVT6 689 aa15.1■□□□□ 0.01
USP49-201ENST00000373006 MYCBPAPQ8TBZ2 947 aa15.1■□□□□ 0.01
USP49-201ENST00000373006 N4BP2L2Q92802 583 aaPredicted RBP15.1■□□□□ 0.01
USP49-201ENST00000373006 ATP6V1G3Q96LB4 118 aa15.1■□□□□ 0.01
USP49-201ENST00000373006 PJA2O43164 708 aa15.1■□□□□ 0.01
USP49-201ENST00000373006 TNFRSF8P28908 595 aa15.1■□□□□ 0.01
USP49-201ENST00000373006 DNAAF5Q86Y56 855 aa15.1■□□□□ 0.01
USP49-201ENST00000373006 PACSIN1Q9BY11 444 aa15.1■□□□□ 0.01
USP49-201ENST00000373006 CUEDC2Q9H467 287 aa15.1■□□□□ 0.01
USP49-201ENST00000373006 GOLPH3Q9H4A6 298 aa15.1■□□□□ 0.01
USP49-201ENST00000373006 BARHL2Q9NY43 387 aa15.1■□□□□ 0.01
USP49-201ENST00000373006 A6NNZ2 444 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms