RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 RNF217Q8TC41 542 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 PSTPIP2Q9H939 334 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 PCDHB4Q9Y5E5 795 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 PNMA6AP0CW24 399 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-208ENST00000367256 POLR2FP61218 127 aaKnown RBP7.91□□□□□ -1.14
SYNE1-208ENST00000367256 ME3Q16798 604 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 MAPKAPK5Q8IW41 473 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 STAMQ92783 540 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 NCLNQ969V3 563 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 RPSAP08865 295 aaKnown RBP7.91□□□□□ -1.14
SYNE1-208ENST00000367256 POLR2BP30876 1174 aaKnown RBP7.91□□□□□ -1.14
SYNE1-208ENST00000367256 MSH2P43246 934 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 GNPTABQ3T906 1256 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 FAM178BQ8IXR5 827 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 SPDYE1Q8NFV5 336 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-208ENST00000367256 ATP8B3O60423 1300 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 PLS3P13797 630 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 PTPREP23469 700 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 ATG16L1Q676U5 607 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 DEPDC1BQ8WUY9 529 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 ATP6V0A1Q93050 837 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 GCNT4Q9P109 453 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 FIS1Q9Y3D6 152 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 DMRT2Q9Y5R5 561 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 CREB3O43889 395 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 PPP6R2O75170 966 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 DRP2Q13474 957 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 SGO2Q562F6 1265 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 AK8Q96MA6 479 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 ADPGKQ9BRR6 497 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 LCMT1Q9UIC8 334 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 RNMTO43148 476 aaKnown RBP7.91□□□□□ -1.14
SYNE1-208ENST00000367256 YWHAHQ04917 246 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-208ENST00000367256 TERF2Q15554 542 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 SRRM1Q8IYB3 904 aaKnown RBP7.91□□□□□ -1.14
SYNE1-208ENST00000367256 FAM186BQ8IYM0 893 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 ARHGAP18Q8N392 663 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 SERTAD1Q9UHV2 236 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 MID2Q9UJV3 735 aa7.91□□□□□ -1.14
SYNE1-208ENST00000367256 SH3TC1Q8TE82 1336 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 ADCY1Q08828 1119 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 UHMK1Q8TAS1 419 aaKnown RBP7.9□□□□□ -1.14
SYNE1-208ENST00000367256 KLHL29Q96CT2 875 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 ZNF408Q9H9D4 720 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 EXOC1LA0A1B0GW35 172 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 E7EWF7 191 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 SEMA3EO15041 775 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 ARHGEF9O43307 516 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 DCTN3O75935 186 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 TECP42680 631 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 ADCY2Q08462 1091 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 BLIDQ8IZY5 108 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 KCTD6Q8NC69 237 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 FRMPD2Q68DX3 1309 aaPredicted RBP7.9□□□□□ -1.14
SYNE1-208ENST00000367256 E9PMD0 336 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 JAK2O60674 1132 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 KRT1P04264 644 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 NR1D1P20393 614 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 COPB1P53618 953 aaKnown RBP7.9□□□□□ -1.14
SYNE1-208ENST00000367256 TSPYL6Q8N831 410 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 LRRC59Q96AG4 307 aaKnown RBP7.9□□□□□ -1.14
SYNE1-208ENST00000367256 STK17AQ9UEE5 414 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 SHROOM2Q13796 1616 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 CFAP74Q9C0B2 1584 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 CTNND1O60716 968 aaKnown RBP7.9□□□□□ -1.14
SYNE1-208ENST00000367256 DDAH1O94760 285 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 OR52Z1P0C646 297 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 E2F5Q15329 346 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 NUDCD3Q8IVD9 361 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 CEP70Q8NHQ1 597 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 FAM89AQ96GI7 184 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 POLE2P56282 527 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 EXOC3L4Q17RC7 722 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 GPKOWQ92917 476 aaPredicted RBP eCLIP7.9□□□□□ -1.14
SYNE1-208ENST00000367256 TTC25Q96NG3 672 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 TSC22D3Q99576 134 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 ATP8A2Q9NTI2 1148 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 ATP8A1Q9Y2Q0 1164 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 PTPRKQ15262 1439 aa7.9□□□□□ -1.14
SYNE1-208ENST00000367256 TMOD1P28289 359 aa7.9□□□□□ -1.15
SYNE1-208ENST00000367256 PMLP29590 882 aa7.9□□□□□ -1.15
SYNE1-208ENST00000367256 DHX9Q08211 1270 aaKnown RBP7.9□□□□□ -1.15
SYNE1-208ENST00000367256 XKR9Q5GH70 373 aa7.9□□□□□ -1.15
SYNE1-208ENST00000367256 ZNF594Q96JF6 807 aaPredicted RBP7.9□□□□□ -1.15
SYNE1-208ENST00000367256 FAM193BQ96PV7 902 aaPredicted RBP7.9□□□□□ -1.15
SYNE1-208ENST00000367256 TEX12Q9BXU0 123 aa7.9□□□□□ -1.15
SYNE1-208ENST00000367256 FAM96AQ9H5X1 160 aa7.9□□□□□ -1.15
SYNE1-208ENST00000367256 HNRNPDLO14979 420 aaKnown RBP7.9□□□□□ -1.15
SYNE1-208ENST00000367256 TAF5LO75529 589 aa7.9□□□□□ -1.15
SYNE1-208ENST00000367256 SEC31AO94979 1220 aaKnown RBP7.9□□□□□ -1.15
SYNE1-208ENST00000367256 GUCY2CP25092 1073 aa7.9□□□□□ -1.15
SYNE1-208ENST00000367256 PCYT1AP49585 367 aa7.9□□□□□ -1.15
SYNE1-208ENST00000367256 C6orf118Q5T5N4 469 aa7.9□□□□□ -1.15
SYNE1-208ENST00000367256 ZNF449Q6P9G9 518 aa7.9□□□□□ -1.15
SYNE1-208ENST00000367256 RYBPQ8N488 228 aaPredicted RBP7.9□□□□□ -1.15
SYNE1-208ENST00000367256 UPF3AQ9H1J1 476 aaKnown RBP7.9□□□□□ -1.15
SYNE1-208ENST00000367256 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.9□□□□□ -1.15
SYNE1-208ENST00000367256 KDM5CP41229 1560 aa7.9□□□□□ -1.15
SYNE1-208ENST00000367256 PZPP20742 1482 aa7.9□□□□□ -1.15
SYNE1-208ENST00000367256 NUP153P49790 1475 aaKnown RBP7.9□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms