RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 ZBTB48P10074 688 aaPredicted RBP21.07■□□□□ 0.96
CLN3-204ENST00000357857 KARSQ15046 597 aaKnown RBP21.07■□□□□ 0.96
CLN3-204ENST00000357857 E2F4Q16254 413 aa21.07■□□□□ 0.96
CLN3-204ENST00000357857 RASSF8Q8NHQ8 419 aa21.07■□□□□ 0.96
CLN3-204ENST00000357857 ERCC4Q92889 916 aaPredicted RBP21.07■□□□□ 0.96
CLN3-204ENST00000357857 SPATC1LQ9H0A9 340 aa21.07■□□□□ 0.96
CLN3-204ENST00000357857 LRWD1Q9UFC0 647 aa21.07■□□□□ 0.96
CLN3-204ENST00000357857 CCDC39Q9UFE4 941 aa21.07■□□□□ 0.96
CLN3-204ENST00000357857 PNMA3Q9UL41 463 aa21.07■□□□□ 0.96
CLN3-204ENST00000357857 CCL15-CCL14A0A0B4J2E2 113 aa21.07■□□□□ 0.96
CLN3-204ENST00000357857 HUNKP57058 714 aa21.07■□□□□ 0.96
CLN3-204ENST00000357857 CCL15Q16663 113 aa21.07■□□□□ 0.96
CLN3-204ENST00000357857 L1TD1Q5T7N2 865 aaKnown RBP21.07■□□□□ 0.96
CLN3-204ENST00000357857 CYP2W1Q8TAV3 490 aa21.07■□□□□ 0.96
CLN3-204ENST00000357857 GJA10Q969M2 543 aa21.07■□□□□ 0.96
CLN3-204ENST00000357857 FAM20AQ96MK3 541 aa21.07■□□□□ 0.96
CLN3-204ENST00000357857 RBSNQ9H1K0 784 aa21.07■□□□□ 0.96
CLN3-204ENST00000357857 GRPEL1Q9HAV7 217 aa21.07■□□□□ 0.96
CLN3-204ENST00000357857 DISC1Q9NRI5 854 aa21.07■□□□□ 0.96
CLN3-204ENST00000357857 LCTP09848 1927 aa21.06■□□□□ 0.96
CLN3-204ENST00000357857 PEX10O60683 326 aa21.06■□□□□ 0.96
CLN3-204ENST00000357857 CNMDO75829 334 aa21.06■□□□□ 0.96
CLN3-204ENST00000357857 PNOCQ13519 176 aa21.06■□□□□ 0.96
CLN3-204ENST00000357857 CEP55Q53EZ4 464 aa21.06■□□□□ 0.96
CLN3-204ENST00000357857 PLA2G4DQ86XP0 818 aa21.06■□□□□ 0.96
CLN3-204ENST00000357857 RMDN3Q96TC7 470 aa21.06■□□□□ 0.96
CLN3-204ENST00000357857 GPBP1L1Q9HC44 474 aaPredicted RBP21.06■□□□□ 0.96
CLN3-204ENST00000357857 A1CFQ9NQ94 594 aaKnown RBP21.06■□□□□ 0.96
CLN3-204ENST00000357857 FBXO40Q9UH90 709 aa21.06■□□□□ 0.96
CLN3-204ENST00000357857 SLC45A1Q9Y2W3 748 aa21.06■□□□□ 0.96
CLN3-204ENST00000357857 POTEMA6NI47 508 aa21.05■□□□□ 0.96
CLN3-204ENST00000357857 FOXN1O15353 648 aa21.05■□□□□ 0.96
CLN3-204ENST00000357857 MSH4O15457 936 aa21.05■□□□□ 0.96
CLN3-204ENST00000357857 STAT6P42226 847 aa21.05■□□□□ 0.96
CLN3-204ENST00000357857 MRE11P49959 708 aa21.05■□□□□ 0.96
CLN3-204ENST00000357857 MDM2Q00987 491 aaPredicted RBP21.05■□□□□ 0.96
CLN3-204ENST00000357857 POSTNQ15063 836 aa21.05■□□□□ 0.96
CLN3-204ENST00000357857 RRAGBQ5VZM2 374 aa21.05■□□□□ 0.96
CLN3-204ENST00000357857 PCNX4Q63HM2 1172 aa21.05■□□□□ 0.96
CLN3-204ENST00000357857 ZNF784Q8NCA9 323 aaPredicted RBP21.05■□□□□ 0.96
CLN3-204ENST00000357857 IL31RAQ8NI17 732 aa21.05■□□□□ 0.96
CLN3-204ENST00000357857 BRI3BPQ8WY22 251 aa21.05■□□□□ 0.96
CLN3-204ENST00000357857 UIMC1Q96RL1 719 aa21.05■□□□□ 0.96
CLN3-204ENST00000357857 PXMP2Q9NR77 195 aa21.05■□□□□ 0.96
CLN3-204ENST00000357857 CYP39A1Q9NYL5 469 aa21.05■□□□□ 0.96
CLN3-204ENST00000357857 EIF2AK2P19525 551 aaKnown RBP21.04■□□□□ 0.96
CLN3-204ENST00000357857 SETQ01105 290 aaPredicted RBP21.04■□□□□ 0.96
CLN3-204ENST00000357857 ARHGEF16Q5VV41 709 aa21.04■□□□□ 0.96
CLN3-204ENST00000357857 GTF3C2Q8WUA4 911 aaPredicted RBP21.04■□□□□ 0.96
CLN3-204ENST00000357857 MXRA8Q9BRK3 442 aa21.04■□□□□ 0.96
CLN3-204ENST00000357857 MMTAG2Q9BU76 263 aaKnown RBP21.04■□□□□ 0.96
CLN3-204ENST00000357857 RBPJLQ9UBG7 517 aa21.04■□□□□ 0.96
CLN3-204ENST00000357857 BTBD19C9JJ37 291 aa21.04■□□□□ 0.96
CLN3-204ENST00000357857 MEIS1O00470 390 aa21.04■□□□□ 0.96
CLN3-204ENST00000357857 PGM5Q15124 567 aa21.04■□□□□ 0.96
CLN3-204ENST00000357857 ZRSR1Q15695 479 aaKnown RBP21.04■□□□□ 0.96
CLN3-204ENST00000357857 STX1AQ16623 288 aa21.04■□□□□ 0.96
CLN3-204ENST00000357857 PDXDC2PQ6P474 469 aa21.04■□□□□ 0.96
CLN3-204ENST00000357857 SH3RF1Q7Z6J0 888 aa21.04■□□□□ 0.96
CLN3-204ENST00000357857 ANKRD23Q86SG2 305 aa21.04■□□□□ 0.96
CLN3-204ENST00000357857 NCAPG2Q86XI2 1143 aa21.04■□□□□ 0.96
CLN3-204ENST00000357857 GRAMD1CQ8IYS0 662 aa21.04■□□□□ 0.96
CLN3-204ENST00000357857 CALML4Q96GE6 196 aa21.04■□□□□ 0.96
CLN3-204ENST00000357857 PAGE5Q96GU1 130 aa21.04■□□□□ 0.96
CLN3-204ENST00000357857 PURBQ96QR8 312 aaKnown RBP21.04■□□□□ 0.96
CLN3-204ENST00000357857 PDCD2LQ9BRP1 358 aa21.04■□□□□ 0.96
CLN3-204ENST00000357857 MOV10L1Q9BXT6 1211 aaKnown RBP21.04■□□□□ 0.96
CLN3-204ENST00000357857 TUBE1Q9UJT0 475 aa21.04■□□□□ 0.96
CLN3-204ENST00000357857 PASKQ96RG2 1323 aa21.03■□□□□ 0.96
CLN3-204ENST00000357857 PDHXO00330 501 aa21.03■□□□□ 0.96
CLN3-204ENST00000357857 SLC25A27O95847 323 aa21.03■□□□□ 0.96
CLN3-204ENST00000357857 PRR29P0C7W0 189 aa21.03■□□□□ 0.96
CLN3-204ENST00000357857 COPB2P35606 906 aa21.03■□□□□ 0.96
CLN3-204ENST00000357857 DEKP35659 375 aaKnown RBP21.03■□□□□ 0.96
CLN3-204ENST00000357857 KRT79Q5XKE5 535 aa21.03■□□□□ 0.96
CLN3-204ENST00000357857 NIPA1Q7RTP0 329 aa21.03■□□□□ 0.96
CLN3-204ENST00000357857 ZFP91Q96JP5 570 aaPredicted RBP21.03■□□□□ 0.96
CLN3-204ENST00000357857 TXNRD2Q9NNW7 524 aa21.03■□□□□ 0.96
CLN3-204ENST00000357857 PFASO15067 1338 aa21.02■□□□□ 0.96
CLN3-204ENST00000357857 PLCG1P19174 1290 aa21.02■□□□□ 0.96
CLN3-204ENST00000357857 AFMP43652 599 aa21.02■□□□□ 0.96
CLN3-204ENST00000357857 ANO6Q4KMQ2 910 aa21.02■□□□□ 0.96
CLN3-204ENST00000357857 ANKRD35Q8N283 1001 aa21.02■□□□□ 0.96
CLN3-204ENST00000357857 RNF214Q8ND24 703 aa21.02■□□□□ 0.96
CLN3-204ENST00000357857 SNX29Q8TEQ0 813 aa21.02■□□□□ 0.96
CLN3-204ENST00000357857 PLIN2Q99541 437 aa21.02■□□□□ 0.96
CLN3-204ENST00000357857 ANO10Q9NW15 660 aa21.02■□□□□ 0.96
CLN3-204ENST00000357857 UBIAD1Q9Y5Z9 338 aa21.02■□□□□ 0.96
CLN3-204ENST00000357857 CYP2C8P10632 490 aa21.01■□□□□ 0.95
CLN3-204ENST00000357857 MYCLP12524 364 aaPredicted RBP21.01■□□□□ 0.95
CLN3-204ENST00000357857 MRPS9P82933 396 aaKnown RBP21.01■□□□□ 0.95
CLN3-204ENST00000357857 NAALADL2Q58DX5 795 aa21.01■□□□□ 0.95
CLN3-204ENST00000357857 XRRA1Q6P2D8 792 aa21.01■□□□□ 0.95
CLN3-204ENST00000357857 RASAL3Q86YV0 1011 aa21.01■□□□□ 0.95
CLN3-204ENST00000357857 NSUN6Q8TEA1 469 aaKnown RBP21.01■□□□□ 0.95
CLN3-204ENST00000357857 SLC5A5Q92911 643 aa21.01■□□□□ 0.95
CLN3-204ENST00000357857 CDK5RAP3Q96JB5 506 aa21.01■□□□□ 0.95
CLN3-204ENST00000357857 CUEDC2Q9H467 287 aa21.01■□□□□ 0.95
CLN3-204ENST00000357857 PCDHA5Q9Y5H7 936 aa21.01■□□□□ 0.95
CLN3-204ENST00000357857 ARP10275 920 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms