RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 PPFIBP1Q86W92 1011 aa9.64□□□□□ -0.87
TRIM55-204ENST00000353317 DAGLBQ8NCG7 672 aa9.64□□□□□ -0.87
TRIM55-204ENST00000353317 SYMPKQ92797 1274 aaKnown RBP9.64□□□□□ -0.87
TRIM55-204ENST00000353317 NAA15Q9BXJ9 866 aaKnown RBP9.64□□□□□ -0.87
TRIM55-204ENST00000353317 ANKZF1Q9H8Y5 726 aa9.64□□□□□ -0.87
TRIM55-204ENST00000353317 TMEM51Q9NW97 253 aa9.64□□□□□ -0.87
TRIM55-204ENST00000353317 PPP1R3GB7ZBB8 358 aa9.63□□□□□ -0.87
TRIM55-204ENST00000353317 H3BQF6 201 aa9.63□□□□□ -0.87
TRIM55-204ENST00000353317 TULP2O00295 520 aa9.63□□□□□ -0.87
TRIM55-204ENST00000353317 MAP2K7O14733 419 aa9.63□□□□□ -0.87
TRIM55-204ENST00000353317 COBLO75128 1261 aa9.63□□□□□ -0.87
TRIM55-204ENST00000353317 GYPCP04921 128 aa9.63□□□□□ -0.87
TRIM55-204ENST00000353317 FXR1P51114 621 aaKnown RBP eCLIP9.63□□□□□ -0.87
TRIM55-204ENST00000353317 DPYDQ12882 1025 aa9.63□□□□□ -0.87
TRIM55-204ENST00000353317 PTGDRQ13258 359 aa9.63□□□□□ -0.87
TRIM55-204ENST00000353317 GPR162Q16538 588 aa9.63□□□□□ -0.87
TRIM55-204ENST00000353317 CDC37Q16543 378 aaPredicted RBP9.63□□□□□ -0.87
TRIM55-204ENST00000353317 TTC38Q5R3I4 469 aa9.63□□□□□ -0.87
TRIM55-204ENST00000353317 ZNF341Q9BYN7 854 aa9.63□□□□□ -0.87
TRIM55-204ENST00000353317 TMEM60Q9H2L4 133 aa9.63□□□□□ -0.87
TRIM55-204ENST00000353317 SEC63Q9UGP8 760 aaKnown RBP9.63□□□□□ -0.87
TRIM55-204ENST00000353317 CDC23Q9UJX2 597 aa9.63□□□□□ -0.87
TRIM55-204ENST00000353317 PRR12Q9ULL5 1215 aa9.63□□□□□ -0.87
TRIM55-204ENST00000353317 RLFQ13129 1914 aa9.63□□□□□ -0.87
TRIM55-204ENST00000353317 PARP14Q460N5 1801 aa9.63□□□□□ -0.87
TRIM55-204ENST00000353317 TRIM75PA6NK02 468 aa9.63□□□□□ -0.87
TRIM55-204ENST00000353317 KIF5CO60282 957 aa9.63□□□□□ -0.87
TRIM55-204ENST00000353317 ASNSP08243 561 aa9.63□□□□□ -0.87
TRIM55-204ENST00000353317 MCM7P33993 719 aa9.63□□□□□ -0.87
TRIM55-204ENST00000353317 CT47A1Q5JQC4 288 aaPredicted RBP9.63□□□□□ -0.87
TRIM55-204ENST00000353317 ZNF569Q5MCW4 686 aa9.63□□□□□ -0.87
TRIM55-204ENST00000353317 BTNL9Q6UXG8 535 aa9.63□□□□□ -0.87
TRIM55-204ENST00000353317 STAMQ92783 540 aa9.63□□□□□ -0.87
TRIM55-204ENST00000353317 VCPKMTQ9H867 229 aa9.63□□□□□ -0.87
TRIM55-204ENST00000353317 ZNF112Q9UJU3 913 aa9.63□□□□□ -0.87
TRIM55-204ENST00000353317 USP17L15C9J2P7 530 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 USP17L13C9JLJ4 530 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 USP17L11C9JVI0 530 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 USP17L18D6R9N7 530 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 USP17L22D6RA61 530 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 USP17L17D6RBQ6 530 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 USP17L19D6RCP7 530 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 USP17L20D6RJB6 530 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 POTEIP0CG38 1075 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 POTEJP0CG39 1038 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 CAPN2P17655 700 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 CALML3P27482 149 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 USP17L24Q0WX57 530 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 BRD3Q15059 726 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 BEND6Q5SZJ8 279 aaPredicted RBP9.62□□□□□ -0.87
TRIM55-204ENST00000353317 USP17L6PQ6QN14 398 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 TXLNBQ8N3L3 684 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 TBC1D5Q92609 795 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 TRERF1Q96PN7 1200 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 GSDMAQ96QA5 445 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 CTAGE1Q96RT6 745 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 PNKPQ96T60 521 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 ARHGEF10LQ9HCE6 1279 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 ADAM21Q9UKJ8 722 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 OTOFQ9HC10 1997 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 RNF225M0QZC1 329 aaPredicted RBP9.62□□□□□ -0.87
TRIM55-204ENST00000353317 CTNND1O60716 968 aaKnown RBP9.62□□□□□ -0.87
TRIM55-204ENST00000353317 USP2O75604 605 aaPredicted RBP9.62□□□□□ -0.87
TRIM55-204ENST00000353317 CDC25AP30304 524 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 CCT6AP40227 531 aaKnown RBP9.62□□□□□ -0.87
TRIM55-204ENST00000353317 CLK2P49760 499 aaKnown RBP9.62□□□□□ -0.87
TRIM55-204ENST00000353317 USH1GQ495M9 461 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 SYDE2Q5VT97 1194 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 SAMD1Q6SPF0 538 aaPredicted RBP9.62□□□□□ -0.87
TRIM55-204ENST00000353317 MOB2Q70IA6 237 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 ACRBPQ8NEB7 543 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 HNRNPLLQ8WVV9 542 aaKnown RBP9.62□□□□□ -0.87
TRIM55-204ENST00000353317 CNKSR2Q8WXI2 1034 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 ZBTB9Q96C00 473 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 KLRG1Q96E93 195 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 WRNIP1Q96S55 665 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 ADARB2Q9NS39 739 aaKnown RBP9.62□□□□□ -0.87
TRIM55-204ENST00000353317 EMILIN3Q9NT22 766 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 PCDHA1Q9Y5I3 950 aa9.62□□□□□ -0.87
TRIM55-204ENST00000353317 RAD51AP2Q09MP3 1159 aa9.61□□□□□ -0.87
TRIM55-204ENST00000353317 APOBEC3FQ8IUX4 373 aaKnown RBP9.61□□□□□ -0.87
TRIM55-204ENST00000353317 CNGA4Q8IV77 575 aa9.61□□□□□ -0.87
TRIM55-204ENST00000353317 SLC35F6Q8N357 371 aa9.61□□□□□ -0.87
TRIM55-204ENST00000353317 CEP112Q8N8E3 955 aa9.61□□□□□ -0.87
TRIM55-204ENST00000353317 CCDC148Q8NFR7 591 aa9.61□□□□□ -0.87
TRIM55-204ENST00000353317 WNK4Q96J92 1243 aa9.61□□□□□ -0.87
TRIM55-204ENST00000353317 SUGCTQ9HAC7 445 aa9.61□□□□□ -0.87
TRIM55-204ENST00000353317 BRMS1Q9HCU9 246 aa9.61□□□□□ -0.87
TRIM55-204ENST00000353317 RAB21Q9UL25 225 aa9.61□□□□□ -0.87
TRIM55-204ENST00000353317 PAPPA2Q9BXP8 1791 aa9.61□□□□□ -0.87
TRIM55-204ENST00000353317 PTPRFP10586 1907 aa9.61□□□□□ -0.87
TRIM55-204ENST00000353317 ESYT2A0FGR8 921 aa9.61□□□□□ -0.87
TRIM55-204ENST00000353317 MEIS2O14770 477 aa9.61□□□□□ -0.87
TRIM55-204ENST00000353317 PTPRAP18433 802 aa9.61□□□□□ -0.87
TRIM55-204ENST00000353317 FECHP22830 423 aa9.61□□□□□ -0.87
TRIM55-204ENST00000353317 ERVK-24P63145 666 aa9.61□□□□□ -0.87
TRIM55-204ENST00000353317 ATP2C1P98194 919 aaPredicted RBP9.61□□□□□ -0.87
TRIM55-204ENST00000353317 SPP2Q13103 211 aa9.61□□□□□ -0.87
TRIM55-204ENST00000353317 IKQ13123 557 aaPredicted RBP9.61□□□□□ -0.87
TRIM55-204ENST00000353317 GPS2Q13227 327 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms