RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 RNF41Q9H4P4 317 aaPredicted RBP9.5□□□□□ -0.89
CD44-205ENST00000352818 ARMT1Q9H993 441 aa9.5□□□□□ -0.89
CD44-205ENST00000352818 SLC4A4Q9Y6R1 1079 aa9.5□□□□□ -0.89
CD44-205ENST00000352818 NEDD4P46934 1319 aa9.5□□□□□ -0.89
CD44-205ENST00000352818 MAGEB6P1A0A0J9YX57 407 aa9.49□□□□□ -0.89
CD44-205ENST00000352818 KLF18A0A0U1RQI7 1052 aa9.49□□□□□ -0.89
CD44-205ENST00000352818 GOLGA8BA8MQT2 603 aa9.49□□□□□ -0.89
CD44-205ENST00000352818 APPP05067 770 aa9.49□□□□□ -0.89
CD44-205ENST00000352818 PGK2P07205 417 aa9.49□□□□□ -0.89
CD44-205ENST00000352818 LTBRP36941 435 aa9.49□□□□□ -0.89
CD44-205ENST00000352818 CCDC183Q5T5S1 534 aa9.49□□□□□ -0.89
CD44-205ENST00000352818 CYB5R4Q7L1T6 521 aa9.49□□□□□ -0.89
CD44-205ENST00000352818 FRMD5Q7Z6J6 570 aa9.49□□□□□ -0.89
CD44-205ENST00000352818 ABRAQ8N0Z2 381 aa9.49□□□□□ -0.89
CD44-205ENST00000352818 SHCBP1Q8NEM2 672 aa9.49□□□□□ -0.89
CD44-205ENST00000352818 HERC5Q9UII4 1024 aaKnown RBP9.49□□□□□ -0.89
CD44-205ENST00000352818 H3BQV1 296 aa9.48□□□□□ -0.89
CD44-205ENST00000352818 FIBPO43427 364 aa9.48□□□□□ -0.89
CD44-205ENST00000352818 B4GALT4O60513 344 aa9.48□□□□□ -0.89
CD44-205ENST00000352818 GADD45BO75293 160 aaPredicted RBP9.48□□□□□ -0.89
CD44-205ENST00000352818 CDKL5O76039 1030 aa9.48□□□□□ -0.89
CD44-205ENST00000352818 TDO2P48775 406 aa9.48□□□□□ -0.89
CD44-205ENST00000352818 ZXDAP98168 799 aa9.48□□□□□ -0.89
CD44-205ENST00000352818 SMAD2Q15796 467 aaKnown RBP9.48□□□□□ -0.89
CD44-205ENST00000352818 ST3GAL2Q16842 350 aa9.48□□□□□ -0.89
CD44-205ENST00000352818 ZNF792Q3KQV3 632 aa9.48□□□□□ -0.89
CD44-205ENST00000352818 SPTY2D1Q68D10 685 aaPredicted RBP9.48□□□□□ -0.89
CD44-205ENST00000352818 ADGRA1Q86SQ6 560 aa9.48□□□□□ -0.89
CD44-205ENST00000352818 RPUSD2Q8IZ73 545 aaKnown RBP9.48□□□□□ -0.89
CD44-205ENST00000352818 PHOSPHO2Q8TCD6 241 aa9.48□□□□□ -0.89
CD44-205ENST00000352818 ACER1Q8TDN7 264 aa9.48□□□□□ -0.89
CD44-205ENST00000352818 IGDCC4Q8TDY8 1250 aa9.48□□□□□ -0.89
CD44-205ENST00000352818 NSUN4Q96CB9 384 aaKnown RBP9.48□□□□□ -0.89
CD44-205ENST00000352818 SLC9A7Q96T83 725 aa9.48□□□□□ -0.89
CD44-205ENST00000352818 IRF2BPLQ9H1B7 796 aa9.48□□□□□ -0.89
CD44-205ENST00000352818 UPF3AQ9H1J1 476 aaKnown RBP9.48□□□□□ -0.89
CD44-205ENST00000352818 LY9Q9HBG7 655 aa9.48□□□□□ -0.89
CD44-205ENST00000352818 GDPD2Q9HCC8 539 aa9.48□□□□□ -0.89
CD44-205ENST00000352818 RAI14Q9P0K7 980 aa9.48□□□□□ -0.89
CD44-205ENST00000352818 MTUS1Q9ULD2 1270 aa9.48□□□□□ -0.89
CD44-205ENST00000352818 BRPF3Q9ULD4 1205 aa9.48□□□□□ -0.89
CD44-205ENST00000352818 NAV1Q8NEY1 1877 aa9.48□□□□□ -0.89
CD44-205ENST00000352818 MROH7-TTC4A0A0A0MT08 1334 aa9.48□□□□□ -0.89
CD44-205ENST00000352818 STK36Q9NRP7 1315 aa9.48□□□□□ -0.89
CD44-205ENST00000352818 B4E1Z4 1266 aa9.47□□□□□ -0.89
CD44-205ENST00000352818 TLR3O15455 904 aaKnown RBP9.47□□□□□ -0.89
CD44-205ENST00000352818 GALR2O43603 387 aaPredicted RBP9.47□□□□□ -0.89
CD44-205ENST00000352818 SNAI1O95863 264 aaPredicted RBP9.47□□□□□ -0.89
CD44-205ENST00000352818 PDGFBP01127 241 aaPredicted RBP9.47□□□□□ -0.89
CD44-205ENST00000352818 FGRP09769 529 aa9.47□□□□□ -0.89
CD44-205ENST00000352818 ERVK-21P61565 698 aa9.47□□□□□ -0.89
CD44-205ENST00000352818 CCT2P78371 535 aaKnown RBP9.47□□□□□ -0.89
CD44-205ENST00000352818 PPARAQ07869 468 aa9.47□□□□□ -0.89
CD44-205ENST00000352818 ACAP1Q15027 740 aa9.47□□□□□ -0.89
CD44-205ENST00000352818 APOA5Q6Q788 366 aa9.47□□□□□ -0.89
CD44-205ENST00000352818 MFSD6Q6ZSS7 791 aa9.47□□□□□ -0.89
CD44-205ENST00000352818 CHST3Q7LGC8 479 aa9.47□□□□□ -0.89
CD44-205ENST00000352818 DEFB128Q7Z7B8 93 aa9.47□□□□□ -0.89
CD44-205ENST00000352818 TTC6Q86TZ1 520 aa9.47□□□□□ -0.89
CD44-205ENST00000352818 CERS3Q8IU89 383 aa9.47□□□□□ -0.89
CD44-205ENST00000352818 LEO1Q8WVC0 666 aaPredicted RBP9.47□□□□□ -0.89
CD44-205ENST00000352818 VTI1AQ96AJ9 217 aa9.47□□□□□ -0.89
CD44-205ENST00000352818 DDX11Q96FC9 970 aa9.47□□□□□ -0.89
CD44-205ENST00000352818 RPAP3Q9H6T3 665 aaPredicted RBP9.47□□□□□ -0.89
CD44-205ENST00000352818 NCOA5Q9HCD5 579 aaKnown RBP9.47□□□□□ -0.89
CD44-205ENST00000352818 GPHNQ9NQX3 736 aaPredicted RBP9.47□□□□□ -0.89
CD44-205ENST00000352818 ABCF2Q9UG63 623 aa9.47□□□□□ -0.89
CD44-205ENST00000352818 CFAP45Q9UL16 551 aa9.47□□□□□ -0.89
CD44-205ENST00000352818 MAST4O15021 2626 aa9.47□□□□□ -0.89
CD44-205ENST00000352818 BAZ2AQ9UIF9 1905 aaKnown RBP9.46□□□□□ -0.89
CD44-205ENST00000352818 SPEGQ15772 3267 aa9.46□□□□□ -0.89
CD44-205ENST00000352818 PRKAB2O43741 272 aa9.46□□□□□ -0.9
CD44-205ENST00000352818 DUSP11O75319 330 aaKnown RBP9.46□□□□□ -0.9
CD44-205ENST00000352818 C6orf222P0C671 652 aaPredicted RBP9.46□□□□□ -0.9
CD44-205ENST00000352818 FDPSP14324 419 aaKnown RBP9.46□□□□□ -0.9
CD44-205ENST00000352818 METAP2P50579 478 aaKnown RBP eCLIP9.46□□□□□ -0.9
CD44-205ENST00000352818 GJA9P57773 515 aa9.46□□□□□ -0.9
CD44-205ENST00000352818 MECOMQ03112 1051 aa9.46□□□□□ -0.9
CD44-205ENST00000352818 DLX2Q07687 328 aaPredicted RBP9.46□□□□□ -0.9
CD44-205ENST00000352818 SART3Q15020 963 aaKnown RBP9.46□□□□□ -0.9
CD44-205ENST00000352818 FOXD4L6Q3SYB3 417 aaPredicted RBP9.46□□□□□ -0.9
CD44-205ENST00000352818 CPLX2Q6PUV4 134 aaKnown RBP9.46□□□□□ -0.9
CD44-205ENST00000352818 FOXD4L3Q6VB84 417 aaPredicted RBP9.46□□□□□ -0.9
CD44-205ENST00000352818 BRAPQ7Z569 592 aa9.46□□□□□ -0.9
CD44-205ENST00000352818 FERMT3Q86UX7 667 aa9.46□□□□□ -0.9
CD44-205ENST00000352818 TMTC2Q8N394 836 aa9.46□□□□□ -0.9
CD44-205ENST00000352818 MIGA1Q8NAN2 632 aa9.46□□□□□ -0.9
CD44-205ENST00000352818 PABPC5Q96DU9 382 aaKnown RBP9.46□□□□□ -0.9
CD44-205ENST00000352818 KIAA1683Q9H0B3 1180 aa9.46□□□□□ -0.9
CD44-205ENST00000352818 ATP8A2Q9NTI2 1148 aa9.46□□□□□ -0.9
CD44-205ENST00000352818 FOCADQ5VW36 1801 aa9.46□□□□□ -0.9
CD44-205ENST00000352818 MYH2Q9UKX2 1941 aa9.46□□□□□ -0.9
CD44-205ENST00000352818 CDK5RAP2Q96SN8 1893 aa9.45□□□□□ -0.9
CD44-205ENST00000352818 SYCE3A1L190 88 aa9.45□□□□□ -0.9
CD44-205ENST00000352818 LINC01553A4QN01 128 aa9.45□□□□□ -0.9
CD44-205ENST00000352818 CPLX1O14810 134 aa9.45□□□□□ -0.9
CD44-205ENST00000352818 ZBTB43O43298 467 aa9.45□□□□□ -0.9
CD44-205ENST00000352818 KDM4AO75164 1064 aa9.45□□□□□ -0.9
CD44-205ENST00000352818 GH2P01242 217 aa9.45□□□□□ -0.9
CD44-205ENST00000352818 PTGS1P23219 599 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms