RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 NLRX1Q86UT6 975 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 AACSQ86V21 672 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 ELOA2Q8IYF1 753 aaPredicted RBP3.58□□□□□ -1.84
CSMD3-202ENST00000339701 C8orf76Q96K31 380 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 GLT1D1Q96MS3 346 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 SERPINI1Q99574 410 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 ORC6Q9Y5N6 252 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 MYH9P35579 1960 aaKnown RBP3.58□□□□□ -1.84
CSMD3-202ENST00000339701 KRT13P13646 458 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 HIBADHP31937 336 aaKnown RBP3.58□□□□□ -1.84
CSMD3-202ENST00000339701 PSMD2Q13200 908 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 COLEC12Q5KU26 742 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 USHBP1Q8N6Y0 703 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 ACTR5Q9H9F9 607 aaPredicted RBP3.58□□□□□ -1.84
CSMD3-202ENST00000339701 HOXC10Q9NYD6 342 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 EXOC7Q9UPT5 735 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 PASKQ96RG2 1323 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 SIPA1L3O60292 1781 aaPredicted RBP3.58□□□□□ -1.84
CSMD3-202ENST00000339701 RBBP6Q7Z6E9 1792 aaKnown RBP3.58□□□□□ -1.84
CSMD3-202ENST00000339701 IFIT3O14879 490 aaKnown RBP3.58□□□□□ -1.84
CSMD3-202ENST00000339701 AREL1O15033 823 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 AKR1B10O60218 316 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 CCR3P51677 355 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 HLTFQ14527 1009 aaKnown RBP eCLIP3.58□□□□□ -1.84
CSMD3-202ENST00000339701 CDC37Q16543 378 aaPredicted RBP3.58□□□□□ -1.84
CSMD3-202ENST00000339701 DBN1Q16643 649 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 GKAP1Q5VSY0 366 aaPredicted RBP3.58□□□□□ -1.84
CSMD3-202ENST00000339701 ANO5Q75V66 913 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 METTL13Q8N6R0 699 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 SNIP1Q8TAD8 396 aaKnown RBP3.58□□□□□ -1.84
CSMD3-202ENST00000339701 RABGGTAQ92696 567 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 PHKBQ93100 1093 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 TADA1Q96BN2 335 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 TRPV6Q9H1D0 765 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 SYNDIG1Q9H7V2 258 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 NRDE2Q9H7Z3 1164 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 MAN1A2O60476 641 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 SLC4A2P04920 1241 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 BCAMP50895 628 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 NT5DC4Q86YG4 428 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 TMEM199Q8N511 208 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 C7orf31Q8N865 590 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 GLG1Q92896 1179 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 MRPL46Q9H2W6 279 aaKnown RBP3.58□□□□□ -1.84
CSMD3-202ENST00000339701 GBA2Q9HCG7 927 aaPredicted RBP3.58□□□□□ -1.84
CSMD3-202ENST00000339701 NFAT5O94916 1531 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 ZMYM2Q9UBW7 1377 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 DENND3A2RUS2 1198 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 TROVE2P10155 538 aaKnown RBP eCLIP3.58□□□□□ -1.84
CSMD3-202ENST00000339701 BCRP11274 1271 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 P4HA1P13674 534 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 BRD2P25440 801 aaKnown RBP3.58□□□□□ -1.84
CSMD3-202ENST00000339701 ANGPT1Q15389 498 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 SLC15A2Q16348 729 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 HSP90AA4PQ58FG1 418 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 SYNE4Q8N205 404 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 IQUBQ8NA54 791 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 ZNF280CQ8ND82 737 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 OLFM3Q96PB7 478 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 EYA1Q99502 592 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 BAG1Q99933 345 aaPredicted RBP3.58□□□□□ -1.84
CSMD3-202ENST00000339701 SLC38A10Q9HBR0 1119 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 PIGBOS1A0A0B4J2F0 54 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 SEMA3DO95025 777 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 TCP1P17987 556 aaKnown RBP3.58□□□□□ -1.84
CSMD3-202ENST00000339701 RARSP54136 660 aaKnown RBP3.58□□□□□ -1.84
CSMD3-202ENST00000339701 FAM160A1Q05DH4 1040 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 IL31Q6EBC2 164 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 MLKLQ8NB16 471 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 TCP11Q8WWU5 503 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 IFT81Q8WYA0 676 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 UBE2OQ9C0C9 1292 aaKnown RBP3.58□□□□□ -1.84
CSMD3-202ENST00000339701 NT5C3AQ9H0P0 336 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 BLOC1S6Q9UL45 172 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 RTL9Q8NET4 1388 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 RAD17O75943 681 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 RPS12P25398 132 aaKnown RBP3.58□□□□□ -1.84
CSMD3-202ENST00000339701 HDAC1Q13547 482 aaPredicted RBP3.58□□□□□ -1.84
CSMD3-202ENST00000339701 LAMB3Q13751 1172 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 MRFAP1L1Q96HT8 127 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 MCM9Q9NXL9 1143 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 ENOPH1Q9UHY7 261 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 TRPC6Q9Y210 931 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 LAD1O00515 517 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 IRS4O14654 1257 aaPredicted RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 MTA1Q13330 715 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 RNF219Q5W0B1 726 aaPredicted RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ADALQ6DHV7 355 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 OTUD6AQ7L8S5 288 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 SERBP1Q8NC51 408 aaKnown RBP eCLIP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 STAMQ92783 540 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ZNF274Q96GC6 653 aaPredicted RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 NUDT12Q9BQG2 462 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 CENPKQ9BS16 269 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 TSEN34Q9BSV6 310 aaKnown RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 RNF208Q9H0X6 261 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 HMX1Q9NP08 348 aaPredicted RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 MROH7-TTC4A0A0A0MT08 1334 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 UBR2Q8IWV8 1755 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ATICP31939 592 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms