RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 CCDC196A0A1B0GTZ2 297 aa18.22■□□□□ 0.51
CLN3-201ENST00000333496 LY6KQ17RY6 165 aa18.22■□□□□ 0.51
CLN3-201ENST00000333496 C8orf34Q49A92 452 aa18.22■□□□□ 0.51
CLN3-201ENST00000333496 CXCL17Q6UXB2 119 aa18.22■□□□□ 0.51
CLN3-201ENST00000333496 CHRDL2Q6WN34 429 aa18.22■□□□□ 0.51
CLN3-201ENST00000333496 OR6J1Q8NGC5 347 aa18.22■□□□□ 0.51
CLN3-201ENST00000333496 SMARCC2Q8TAQ2 1214 aa18.22■□□□□ 0.51
CLN3-201ENST00000333496 ELP1O95163 1332 aa18.22■□□□□ 0.51
CLN3-201ENST00000333496 CCT2P78371 535 aaKnown RBP18.21■□□□□ 0.51
CLN3-201ENST00000333496 MRPS9P82933 396 aaKnown RBP18.21■□□□□ 0.51
CLN3-201ENST00000333496 TLE2Q04725 743 aa18.21■□□□□ 0.51
CLN3-201ENST00000333496 CUL5Q93034 780 aa18.21■□□□□ 0.51
CLN3-201ENST00000333496 NCOA5Q9HCD5 579 aaKnown RBP18.21■□□□□ 0.51
CLN3-201ENST00000333496 PDRG1Q9NUG6 133 aa18.21■□□□□ 0.51
CLN3-201ENST00000333496 DDX41Q9UJV9 622 aaKnown RBP18.21■□□□□ 0.51
CLN3-201ENST00000333496 STXBP3O00186 592 aa18.2■□□□□ 0.5
CLN3-201ENST00000333496 CCND2P30279 289 aa18.2■□□□□ 0.5
CLN3-201ENST00000333496 CDK7P50613 346 aa18.2■□□□□ 0.5
CLN3-201ENST00000333496 UBE2SQ16763 222 aa18.2■□□□□ 0.5
CLN3-201ENST00000333496 ANP32EQ9BTT0 268 aa18.2■□□□□ 0.5
CLN3-201ENST00000333496 BARHL2Q9NY43 387 aa18.2■□□□□ 0.5
CLN3-201ENST00000333496 LAMA3Q16787 3333 aa18.2■□□□□ 0.5
CLN3-201ENST00000333496 GRIN2DO15399 1336 aa18.2■□□□□ 0.5
CLN3-201ENST00000333496 ARHGAP1Q07960 439 aa18.2■□□□□ 0.5
CLN3-201ENST00000333496 PKN1Q16512 942 aa18.2■□□□□ 0.5
CLN3-201ENST00000333496 PFKFB3Q16875 520 aaPredicted RBP18.2■□□□□ 0.5
CLN3-201ENST00000333496 ANKRD33Q7Z3H0 272 aa18.2■□□□□ 0.5
CLN3-201ENST00000333496 SH3RF1Q7Z6J0 888 aa18.2■□□□□ 0.5
CLN3-201ENST00000333496 PHKBQ93100 1093 aa18.2■□□□□ 0.5
CLN3-201ENST00000333496 VTI1AQ96AJ9 217 aa18.2■□□□□ 0.5
CLN3-201ENST00000333496 ZNF274Q96GC6 653 aaPredicted RBP18.2■□□□□ 0.5
CLN3-201ENST00000333496 GDF15Q99988 308 aa18.2■□□□□ 0.5
CLN3-201ENST00000333496 PDLIM7Q9NR12 457 aa18.2■□□□□ 0.5
CLN3-201ENST00000333496 RBM27Q9P2N5 1060 aaKnown RBP18.2■□□□□ 0.5
CLN3-201ENST00000333496 A6NJR5 290 aa18.19■□□□□ 0.5
CLN3-201ENST00000333496 PRPF3O43395 683 aaKnown RBP18.19■□□□□ 0.5
CLN3-201ENST00000333496 ZEB2O60315 1214 aa18.19■□□□□ 0.5
CLN3-201ENST00000333496 PPFIA3O75145 1194 aa18.19■□□□□ 0.5
CLN3-201ENST00000333496 CPT1AP50416 773 aa18.19■□□□□ 0.5
CLN3-201ENST00000333496 NAPAP54920 295 aa18.19■□□□□ 0.5
CLN3-201ENST00000333496 MRVI1Q9Y6F6 885 aa18.19■□□□□ 0.5
CLN3-201ENST00000333496 LAMA2P24043 3122 aaKnown RBP18.18■□□□□ 0.5
CLN3-201ENST00000333496 A0A0U1RQG5 324 aaPredicted RBP18.18■□□□□ 0.5
CLN3-201ENST00000333496 hCG_1984214I3L0E3 225 aa18.18■□□□□ 0.5
CLN3-201ENST00000333496 ARVCFO00192 962 aa18.18■□□□□ 0.5
CLN3-201ENST00000333496 PQBP1O60828 265 aaKnown RBP18.18■□□□□ 0.5
CLN3-201ENST00000333496 CABYRO75952 493 aa18.18■□□□□ 0.5
CLN3-201ENST00000333496 GH1P01241 217 aa18.18■□□□□ 0.5
CLN3-201ENST00000333496 SCG2P13521 617 aa18.18■□□□□ 0.5
CLN3-201ENST00000333496 IFNAR1P17181 557 aa18.18■□□□□ 0.5
CLN3-201ENST00000333496 MAGEA10P43363 369 aaPredicted RBP18.18■□□□□ 0.5
CLN3-201ENST00000333496 PURAQ00577 322 aaKnown RBP18.18■□□□□ 0.5
CLN3-201ENST00000333496 SP2Q02086 613 aa18.18■□□□□ 0.5
CLN3-201ENST00000333496 FAAP100Q0VG06 881 aa18.18■□□□□ 0.5
CLN3-201ENST00000333496 ZNF713Q8N859 430 aaPredicted RBP18.18■□□□□ 0.5
CLN3-201ENST00000333496 SLC43A3Q8NBI5 491 aa18.18■□□□□ 0.5
CLN3-201ENST00000333496 TOX2Q96NM4 488 aa18.18■□□□□ 0.5
CLN3-201ENST00000333496 ALDH8A1Q9H2A2 487 aaPredicted RBP18.18■□□□□ 0.5
CLN3-201ENST00000333496 RIC8AQ9NPQ8 531 aa18.18■□□□□ 0.5
CLN3-201ENST00000333496 TRIM43BA6NCK2 446 aa18.17■□□□□ 0.5
CLN3-201ENST00000333496 EIF5BO60841 1220 aaKnown RBP18.17■□□□□ 0.5
CLN3-201ENST00000333496 PSMC6P62333 389 aa18.17■□□□□ 0.5
CLN3-201ENST00000333496 PCNX4Q63HM2 1172 aa18.17■□□□□ 0.5
CLN3-201ENST00000333496 PPP1R18Q6NYC8 613 aa18.17■□□□□ 0.5
CLN3-201ENST00000333496 AFG1LQ8WV93 481 aa18.17■□□□□ 0.5
CLN3-201ENST00000333496 TRIM43Q96BQ3 446 aaPredicted RBP18.17■□□□□ 0.5
CLN3-201ENST00000333496 INPP4AQ96PE3 977 aaPredicted RBP18.17■□□□□ 0.5
CLN3-201ENST00000333496 RTEL1Q9NZ71 1219 aa18.17■□□□□ 0.5
CLN3-201ENST00000333496 PCDHA6Q9UN73 950 aa18.17■□□□□ 0.5
CLN3-201ENST00000333496 PCDHA8Q9Y5H6 950 aa18.17■□□□□ 0.5
CLN3-201ENST00000333496 SMCO2A6NFE2 343 aa18.16■□□□□ 0.5
CLN3-201ENST00000333496 ADAMTS3O15072 1205 aa18.16■□□□□ 0.5
CLN3-201ENST00000333496 MYL3P08590 195 aa18.16■□□□□ 0.5
CLN3-201ENST00000333496 CLTBP09497 229 aa18.16■□□□□ 0.5
CLN3-201ENST00000333496 MDM2Q00987 491 aaPredicted RBP18.16■□□□□ 0.5
CLN3-201ENST00000333496 STK3Q13188 491 aa18.16■□□□□ 0.5
CLN3-201ENST00000333496 SEMA3FQ13275 785 aa18.16■□□□□ 0.5
CLN3-201ENST00000333496 ITGA7Q13683 1181 aa18.16■□□□□ 0.5
CLN3-201ENST00000333496 HABP4Q5JVS0 413 aaKnown RBP18.16■□□□□ 0.5
CLN3-201ENST00000333496 EMID1Q96A84 441 aaPredicted RBP18.16■□□□□ 0.5
CLN3-201ENST00000333496 RNF26Q9BY78 433 aaPredicted RBP18.16■□□□□ 0.5
CLN3-201ENST00000333496 BCAS3Q9H6U6 928 aa18.16■□□□□ 0.5
CLN3-201ENST00000333496 PRDM5Q9NQX1 630 aaPredicted RBP18.16■□□□□ 0.5
CLN3-201ENST00000333496 POLR3EQ9NVU0 708 aa18.16■□□□□ 0.5
CLN3-201ENST00000333496 TRIOBPQ9H2D6 2365 aa18.16■□□□□ 0.5
CLN3-201ENST00000333496 STAM2O75886 525 aa18.16■□□□□ 0.5
CLN3-201ENST00000333496 MMP3P08254 477 aa18.16■□□□□ 0.5
CLN3-201ENST00000333496 TGFB3P10600 412 aa18.16■□□□□ 0.5
CLN3-201ENST00000333496 ITGB8P26012 769 aa18.16■□□□□ 0.5
CLN3-201ENST00000333496 ICAM3P32942 547 aa18.16■□□□□ 0.5
CLN3-201ENST00000333496 CLK2P49760 499 aaKnown RBP18.16■□□□□ 0.5
CLN3-201ENST00000333496 AK2P54819 239 aa18.16■□□□□ 0.5
CLN3-201ENST00000333496 MYSM1Q5VVJ2 828 aa18.16■□□□□ 0.5
CLN3-201ENST00000333496 KCNV1Q6PIU1 500 aa18.16■□□□□ 0.5
CLN3-201ENST00000333496 FAM126BQ8IXS8 530 aa18.16■□□□□ 0.5
CLN3-201ENST00000333496 SLC26A6Q9BXS9 759 aa18.16■□□□□ 0.5
CLN3-201ENST00000333496 TPCN1Q9ULQ1 816 aa18.16■□□□□ 0.5
CLN3-201ENST00000333496 MROH7Q68CQ1 1323 aa18.15■□□□□ 0.5
CLN3-201ENST00000333496 SZT2Q5T011 3432 aa18.15■□□□□ 0.5
CLN3-201ENST00000333496 SPDYE3A6NKU9 549 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms