RNA–Protein interactions for RNA: ENST00000324238.6

CRLF3-201, Transcript of cytokine receptor like factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CRLF3, Length 2,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-201ENST00000324238 SIK3Q9Y2K2 1263 aa22.03■■□□□ 1.12
CRLF3-201ENST00000324238 TNNI2P48788 182 aa22.03■■□□□ 1.12
CRLF3-201ENST00000324238 TRADDQ15628 312 aa22.03■■□□□ 1.12
CRLF3-201ENST00000324238 ECM1Q16610 540 aa22.03■■□□□ 1.12
CRLF3-201ENST00000324238 CACNA2D4Q7Z3S7 1137 aa22.03■■□□□ 1.12
CRLF3-201ENST00000324238 C6orf50Q9HD87 102 aa22.03■■□□□ 1.12
CRLF3-201ENST00000324238 SEC63Q9UGP8 760 aaKnown RBP22.03■■□□□ 1.12
CRLF3-201ENST00000324238 IVLP07476 585 aa22.02■■□□□ 1.12
CRLF3-201ENST00000324238 MFSD14BQ5SR56 506 aa22.02■■□□□ 1.12
CRLF3-201ENST00000324238 TRAPPC3LQ5T215 181 aa22.02■■□□□ 1.12
CRLF3-201ENST00000324238 REXO1Q8N1G1 1221 aaKnown RBP22.02■■□□□ 1.12
CRLF3-201ENST00000324238 SH2D3CQ8N5H7 860 aa22.02■■□□□ 1.12
CRLF3-201ENST00000324238 RPGRQ92834 1020 aaKnown RBP22.02■■□□□ 1.12
CRLF3-201ENST00000324238 RBM12Q9NTZ6 932 aaKnown RBP22.02■■□□□ 1.12
CRLF3-201ENST00000324238 PLAGL2Q9UPG8 496 aa22.02■■□□□ 1.12
CRLF3-201ENST00000324238 PHLPP1O60346 1717 aa22.02■■□□□ 1.12
CRLF3-201ENST00000324238 GOLGA6CA6NDK9 693 aa22.02■■□□□ 1.12
CRLF3-201ENST00000324238 USO1O60763 962 aaKnown RBP22.02■■□□□ 1.12
CRLF3-201ENST00000324238 FTCDO95954 541 aa22.02■■□□□ 1.12
CRLF3-201ENST00000324238 GOLGA6DP0CG33 693 aa22.02■■□□□ 1.12
CRLF3-201ENST00000324238 CALCRLQ16602 461 aa22.02■■□□□ 1.12
CRLF3-201ENST00000324238 WDR66Q8TBY9 1149 aa22.02■■□□□ 1.12
CRLF3-201ENST00000324238 ARL8AQ96BM9 186 aa22.02■■□□□ 1.12
CRLF3-201ENST00000324238 ERGIC2Q96RQ1 377 aa22.02■■□□□ 1.12
CRLF3-201ENST00000324238 GOLGA6AQ9NYA3 693 aa22.02■■□□□ 1.12
CRLF3-201ENST00000324238 NPHP3-ACAD11A0A0J9YXS1 232 aa22.02■■□□□ 1.11
CRLF3-201ENST00000324238 CCT5P48643 541 aa22.02■■□□□ 1.11
CRLF3-201ENST00000324238 AARSP49588 968 aaKnown RBP eCLIP22.02■■□□□ 1.11
CRLF3-201ENST00000324238 CNNM4Q6P4Q7 775 aa22.02■■□□□ 1.11
CRLF3-201ENST00000324238 FAM114A1Q8IWE2 563 aa22.02■■□□□ 1.11
CRLF3-201ENST00000324238 IFT81Q8WYA0 676 aa22.02■■□□□ 1.11
CRLF3-201ENST00000324238 GOLPH3Q9H4A6 298 aa22.02■■□□□ 1.11
CRLF3-201ENST00000324238 KRT25Q7Z3Z0 450 aa22.01■■□□□ 1.11
CRLF3-201ENST00000324238 SNX29Q8TEQ0 813 aa22.01■■□□□ 1.11
CRLF3-201ENST00000324238 NOC3LQ8WTT2 800 aaKnown RBP22.01■■□□□ 1.11
CRLF3-201ENST00000324238 DDX12PQ92771 950 aa22.01■■□□□ 1.11
CRLF3-201ENST00000324238 PURBQ96QR8 312 aaKnown RBP22.01■■□□□ 1.11
CRLF3-201ENST00000324238 JRKLQ9Y4A0 524 aa22.01■■□□□ 1.11
CRLF3-201ENST00000324238 BARGINQ6ZT62 677 aa22.01■■□□□ 1.11
CRLF3-201ENST00000324238 ZHX3Q9H4I2 956 aa22.01■■□□□ 1.11
CRLF3-201ENST00000324238 EDIL3O43854 480 aa22■■□□□ 1.11
CRLF3-201ENST00000324238 TUBBP07437 444 aa22■■□□□ 1.11
CRLF3-201ENST00000324238 ATP1A2P50993 1020 aa22■■□□□ 1.11
CRLF3-201ENST00000324238 CENPPQ6IPU0 288 aa22■■□□□ 1.11
CRLF3-201ENST00000324238 ZSCAN29Q8IWY8 852 aaPredicted RBP22■■□□□ 1.11
CRLF3-201ENST00000324238 LARP4BQ92615 738 aaKnown RBP22■■□□□ 1.11
CRLF3-201ENST00000324238 SAMM50Q9Y512 469 aa22■■□□□ 1.11
CRLF3-201ENST00000324238 SLC16A2P36021 539 aa22■■□□□ 1.11
CRLF3-201ENST00000324238 PRPHP41219 470 aa22■■□□□ 1.11
CRLF3-201ENST00000324238 DAGLBQ8NCG7 672 aa22■■□□□ 1.11
CRLF3-201ENST00000324238 TRIM58Q8NG06 486 aa22■■□□□ 1.11
CRLF3-201ENST00000324238 FAM76AQ8TAV0 307 aa22■■□□□ 1.11
CRLF3-201ENST00000324238 GUCY2FP51841 1108 aa21.99■■□□□ 1.11
CRLF3-201ENST00000324238 ZNF804AQ7Z570 1209 aa21.99■■□□□ 1.11
CRLF3-201ENST00000324238 RETREG2Q8NC44 543 aa21.99■■□□□ 1.11
CRLF3-201ENST00000324238 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.99■■□□□ 1.11
CRLF3-201ENST00000324238 VIPAS39Q9H9C1 493 aa21.99■■□□□ 1.11
CRLF3-201ENST00000324238 CD209Q9NNX6 404 aa21.99■■□□□ 1.11
CRLF3-201ENST00000324238 TARSL2A2RTX5 802 aaKnown RBP21.99■■□□□ 1.11
CRLF3-201ENST00000324238 TRAF5O00463 557 aa21.99■■□□□ 1.11
CRLF3-201ENST00000324238 GTF2IP78347 998 aa21.99■■□□□ 1.11
CRLF3-201ENST00000324238 AMPD3Q01432 767 aa21.99■■□□□ 1.11
CRLF3-201ENST00000324238 GRAPQ13588 217 aa21.99■■□□□ 1.11
CRLF3-201ENST00000324238 GRAPLQ8TC17 118 aaPredicted RBP21.99■■□□□ 1.11
CRLF3-201ENST00000324238 AENQ8WTP8 325 aaKnown RBP21.99■■□□□ 1.11
CRLF3-201ENST00000324238 KRT14P02533 472 aa21.99■■□□□ 1.11
CRLF3-201ENST00000324238 FAM153BP0C7A2 387 aa21.99■■□□□ 1.11
CRLF3-201ENST00000324238 FAM153CQ494X1 144 aa21.99■■□□□ 1.11
CRLF3-201ENST00000324238 CERS3Q8IU89 383 aa21.99■■□□□ 1.11
CRLF3-201ENST00000324238 TLR10Q9BXR5 811 aa21.99■■□□□ 1.11
CRLF3-201ENST00000324238 RTFDC1Q9BY42 306 aaPredicted RBP21.99■■□□□ 1.11
CRLF3-201ENST00000324238 FAM153AQ9UHL3 310 aa21.99■■□□□ 1.11
CRLF3-201ENST00000324238 FAM184BQ9ULE4 1060 aa21.99■■□□□ 1.11
CRLF3-201ENST00000324238 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.98■■□□□ 1.11
CRLF3-201ENST00000324238 ANO9A1A5B4 782 aa21.98■■□□□ 1.11
CRLF3-201ENST00000324238 MARCH6O60337 910 aa21.98■■□□□ 1.11
CRLF3-201ENST00000324238 GNA11P29992 359 aa21.98■■□□□ 1.11
CRLF3-201ENST00000324238 SCNN1DP51172 638 aa21.98■■□□□ 1.11
CRLF3-201ENST00000324238 KCNMA1Q12791 1236 aa21.98■■□□□ 1.11
CRLF3-201ENST00000324238 PACS2Q86VP3 889 aa21.98■■□□□ 1.11
CRLF3-201ENST00000324238 AK8Q96MA6 479 aa21.98■■□□□ 1.11
CRLF3-201ENST00000324238 PACSIN1Q9BY11 444 aa21.98■■□□□ 1.11
CRLF3-201ENST00000324238 MYL1P05976 194 aa21.98■■□□□ 1.11
CRLF3-201ENST00000324238 POLR2FP61218 127 aaKnown RBP21.98■■□□□ 1.11
CRLF3-201ENST00000324238 HAUS3Q68CZ6 603 aa21.98■■□□□ 1.11
CRLF3-201ENST00000324238 TTBK2Q6IQ55 1244 aa21.98■■□□□ 1.11
CRLF3-201ENST00000324238 BAP1Q92560 729 aa21.98■■□□□ 1.11
CRLF3-201ENST00000324238 ANKS1AQ92625 1134 aa21.98■■□□□ 1.11
CRLF3-201ENST00000324238 CNTNAP4Q9C0A0 1308 aa21.98■■□□□ 1.11
CRLF3-201ENST00000324238 FAM196BA6NMK8 535 aa21.97■■□□□ 1.11
CRLF3-201ENST00000324238 LAD1O00515 517 aa21.97■■□□□ 1.11
CRLF3-201ENST00000324238 GLI1P08151 1106 aa21.97■■□□□ 1.11
CRLF3-201ENST00000324238 CARSP49589 748 aaKnown RBP21.97■■□□□ 1.11
CRLF3-201ENST00000324238 CCDC40Q4G0X9 1142 aa21.97■■□□□ 1.11
CRLF3-201ENST00000324238 MSL3Q8N5Y2 521 aaKnown RBP21.97■■□□□ 1.11
CRLF3-201ENST00000324238 IRAK1P51617 712 aa21.97■■□□□ 1.11
CRLF3-201ENST00000324238 MAN2A1Q16706 1144 aa21.97■■□□□ 1.11
CRLF3-201ENST00000324238 NFU1Q9UMS0 254 aa21.97■■□□□ 1.11
CRLF3-201ENST00000324238 TLR2O60603 784 aa21.96■■□□□ 1.11
CRLF3-201ENST00000324238 MCM3P25205 808 aa21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms