RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 POTEEQ6S8J3 1075 aa20.72■□□□□ 0.91
USP39-201ENST00000323701 PURBQ96QR8 312 aaKnown RBP20.72■□□□□ 0.91
USP39-201ENST00000323701 TAF1DQ9H5J8 278 aaPredicted RBP20.72■□□□□ 0.91
USP39-201ENST00000323701 FANCLQ9NW38 375 aa20.72■□□□□ 0.91
USP39-201ENST00000323701 WDR90Q96KV7 1748 aa20.72■□□□□ 0.91
USP39-201ENST00000323701 PEX10O60683 326 aa20.71■□□□□ 0.91
USP39-201ENST00000323701 CLCN1P35523 988 aa20.71■□□□□ 0.91
USP39-201ENST00000323701 IL31RAQ8NI17 732 aa20.71■□□□□ 0.91
USP39-201ENST00000323701 ZNF830Q96NB3 372 aaPredicted RBP20.71■□□□□ 0.91
USP39-201ENST00000323701 MCM6Q14566 821 aa20.7■□□□□ 0.91
USP39-201ENST00000323701 TREML2Q5T2D2 321 aa20.7■□□□□ 0.91
USP39-201ENST00000323701 CATSPERGQ6ZRH7 1159 aa20.7■□□□□ 0.91
USP39-201ENST00000323701 CALML4Q96GE6 196 aa20.7■□□□□ 0.91
USP39-201ENST00000323701 NRBP1Q9UHY1 535 aa20.7■□□□□ 0.91
USP39-201ENST00000323701 ADAMTS5Q9UNA0 930 aa20.7■□□□□ 0.91
USP39-201ENST00000323701 GDAQ9Y2T3 454 aa20.7■□□□□ 0.91
USP39-201ENST00000323701 PPP1R12BO60237 982 aaPredicted RBP20.7■□□□□ 0.9
USP39-201ENST00000323701 ZNF76P36508 570 aa20.7■□□□□ 0.9
USP39-201ENST00000323701 TMEM119Q4V9L6 283 aa20.7■□□□□ 0.9
USP39-201ENST00000323701 KRT79Q5XKE5 535 aa20.7■□□□□ 0.9
USP39-201ENST00000323701 KLHL10Q6JEL2 608 aa20.7■□□□□ 0.9
USP39-201ENST00000323701 RAB34Q9BZG1 259 aa20.7■□□□□ 0.9
USP39-201ENST00000323701 ELP3Q9H9T3 547 aa20.7■□□□□ 0.9
USP39-201ENST00000323701 PTPRFP10586 1907 aa20.69■□□□□ 0.9
USP39-201ENST00000323701 PTMAP06454 111 aaKnown RBP20.69■□□□□ 0.9
USP39-201ENST00000323701 DSG3P32926 999 aa20.69■□□□□ 0.9
USP39-201ENST00000323701 TRIM9Q9C026 710 aa20.69■□□□□ 0.9
USP39-201ENST00000323701 ZNF214Q9UL59 606 aaPredicted RBP20.69■□□□□ 0.9
USP39-201ENST00000323701 MAPK8IP1Q9UQF2 711 aa20.69■□□□□ 0.9
USP39-201ENST00000323701 SMTNL1A8MU46 457 aa20.69■□□□□ 0.9
USP39-201ENST00000323701 ESPNB1AK53 854 aa20.69■□□□□ 0.9
USP39-201ENST00000323701 IRF6O14896 467 aa20.69■□□□□ 0.9
USP39-201ENST00000323701 ZBED4O75132 1171 aa20.69■□□□□ 0.9
USP39-201ENST00000323701 STX17P56962 302 aa20.69■□□□□ 0.9
USP39-201ENST00000323701 TMEM132BQ14DG7 1078 aa20.69■□□□□ 0.9
USP39-201ENST00000323701 KMT5BQ4FZB7 885 aa20.69■□□□□ 0.9
USP39-201ENST00000323701 ZC3H15Q8WU90 426 aaKnown RBP20.69■□□□□ 0.9
USP39-201ENST00000323701 TRERF1Q96PN7 1200 aa20.69■□□□□ 0.9
USP39-201ENST00000323701 CUEDC2Q9H467 287 aa20.69■□□□□ 0.9
USP39-201ENST00000323701 VAV3Q9UKW4 847 aa20.69■□□□□ 0.9
USP39-201ENST00000323701 MED24O75448 989 aa20.68■□□□□ 0.9
USP39-201ENST00000323701 RPS6P62753 249 aaKnown RBP20.68■□□□□ 0.9
USP39-201ENST00000323701 COG2Q14746 738 aa20.68■□□□□ 0.9
USP39-201ENST00000323701 SH3D19Q5HYK7 790 aa20.68■□□□□ 0.9
USP39-201ENST00000323701 SLFN12Q8IYM2 578 aa20.68■□□□□ 0.9
USP39-201ENST00000323701 SYTL5Q8TDW5 730 aaPredicted RBP20.68■□□□□ 0.9
USP39-201ENST00000323701 TMOD4Q9NZQ9 345 aa20.68■□□□□ 0.9
USP39-201ENST00000323701 CSADQ9Y600 493 aa20.68■□□□□ 0.9
USP39-201ENST00000323701 POTEB3A0JP26 581 aa20.68■□□□□ 0.9
USP39-201ENST00000323701 MYMKA6NI61 221 aa20.68■□□□□ 0.9
USP39-201ENST00000323701 TBX3O15119 743 aa20.68■□□□□ 0.9
USP39-201ENST00000323701 GHRHRQ02643 423 aa20.68■□□□□ 0.9
USP39-201ENST00000323701 POTEBQ6S5H4 581 aa20.68■□□□□ 0.9
USP39-201ENST00000323701 TAAR1Q96RJ0 339 aa20.68■□□□□ 0.9
USP39-201ENST00000323701 NFE2L3Q9Y4A8 694 aa20.68■□□□□ 0.9
USP39-201ENST00000323701 SPDYE16A6NNV3 312 aaPredicted RBP20.67■□□□□ 0.9
USP39-201ENST00000323701 EML1O00423 815 aa20.67■□□□□ 0.9
USP39-201ENST00000323701 ARP10275 920 aa20.67■□□□□ 0.9
USP39-201ENST00000323701 CCT6AP40227 531 aaKnown RBP20.67■□□□□ 0.9
USP39-201ENST00000323701 HS1BP3Q53T59 392 aa20.67■□□□□ 0.9
USP39-201ENST00000323701 LARP4BQ92615 738 aaKnown RBP20.67■□□□□ 0.9
USP39-201ENST00000323701 RAD54LQ92698 747 aa20.67■□□□□ 0.9
USP39-201ENST00000323701 HPS3Q969F9 1004 aa20.67■□□□□ 0.9
USP39-201ENST00000323701 OTUD5Q96G74 571 aa20.67■□□□□ 0.9
USP39-201ENST00000323701 CDK5RAP3Q96JB5 506 aa20.67■□□□□ 0.9
USP39-201ENST00000323701 SAMSN1Q9NSI8 373 aaKnown RBP20.67■□□□□ 0.9
USP39-201ENST00000323701 IFNKQ9P0W0 207 aa20.67■□□□□ 0.9
USP39-201ENST00000323701 RPTORQ8N122 1335 aa20.67■□□□□ 0.9
USP39-201ENST00000323701 ITGB5P18084 799 aa20.66■□□□□ 0.9
USP39-201ENST00000323701 CEP55Q53EZ4 464 aa20.66■□□□□ 0.9
USP39-201ENST00000323701 NCAPH2Q6IBW4 605 aa20.66■□□□□ 0.9
USP39-201ENST00000323701 SNRNP48Q6IEG0 339 aaKnown RBP20.66■□□□□ 0.9
USP39-201ENST00000323701 TEX2Q8IWB9 1127 aa20.66■□□□□ 0.9
USP39-201ENST00000323701 ENOX1Q8TC92 643 aaKnown RBP20.66■□□□□ 0.9
USP39-201ENST00000323701 FAM20AQ96MK3 541 aa20.66■□□□□ 0.9
USP39-201ENST00000323701 C7orf25Q9BPX7 421 aa20.66■□□□□ 0.9
USP39-201ENST00000323701 XPO4Q9C0E2 1151 aaKnown RBP20.66■□□□□ 0.9
USP39-201ENST00000323701 E9PMD0 336 aa20.66■□□□□ 0.9
USP39-201ENST00000323701 GRIN3BO60391 1043 aa20.66■□□□□ 0.9
USP39-201ENST00000323701 PRCPP42785 496 aa20.66■□□□□ 0.9
USP39-201ENST00000323701 IREB2P48200 963 aaKnown RBP20.66■□□□□ 0.9
USP39-201ENST00000323701 CCDC144BQ3MJ40 725 aa20.66■□□□□ 0.9
USP39-201ENST00000323701 HYIQ5T013 277 aa20.66■□□□□ 0.9
USP39-201ENST00000323701 ZNF658Q5TYW1 1059 aaPredicted RBP20.66■□□□□ 0.9
USP39-201ENST00000323701 MRFAP1L1Q96HT8 127 aa20.66■□□□□ 0.9
USP39-201ENST00000323701 RNF146Q9NTX7 359 aa20.66■□□□□ 0.9
USP39-201ENST00000323701 KIAA1024Q9UPX6 916 aa20.66■□□□□ 0.9
USP39-201ENST00000323701 CTDP1Q9Y5B0 961 aaPredicted RBP20.66■□□□□ 0.9
USP39-201ENST00000323701 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.66■□□□□ 0.92e-8■■■□□ 16.1
USP39-201ENST00000323701 POTEFA5A3E0 1075 aa20.65■□□□□ 0.9
USP39-201ENST00000323701 MEIS1O00470 390 aa20.65■□□□□ 0.9
USP39-201ENST00000323701 SPATA31C1P0DKV0 1188 aa20.65■□□□□ 0.9
USP39-201ENST00000323701 ERCC5P28715 1186 aaPredicted RBP20.65■□□□□ 0.9
USP39-201ENST00000323701 FANCCQ00597 558 aa20.65■□□□□ 0.9
USP39-201ENST00000323701 POTEGQ6S5H5 508 aa20.65■□□□□ 0.9
USP39-201ENST00000323701 NSMFQ6X4W1 530 aa20.65■□□□□ 0.9
USP39-201ENST00000323701 CATSPER3Q86XQ3 398 aa20.65■□□□□ 0.9
USP39-201ENST00000323701 MAGEF1Q9HAY2 307 aa20.65■□□□□ 0.9
USP39-201ENST00000323701 STK17AQ9UEE5 414 aa20.65■□□□□ 0.9
USP39-201ENST00000323701 DACH1Q9UI36 760 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms