RNA–Protein interactions for RNA: ENST00000315544.6

CNOT4-201, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 3,783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-201ENST00000315544 NLRP3Q96P20 1036 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 TMEM47Q9BQJ4 181 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 ANKRD2Q9GZV1 360 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 BCAS3Q9H6U6 928 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.83□□□□□ -1
CNOT4-201ENST00000315544 TTC7AQ9ULT0 858 aaPredicted RBP8.83□□□□□ -1
CNOT4-201ENST00000315544 TLL2Q9Y6L7 1015 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 V9GYY5 206 aaPredicted RBP8.83□□□□□ -1
CNOT4-201ENST00000315544 PTPRSQ13332 1948 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 ANO9A1A5B4 782 aa8.82□□□□□ -1
CNOT4-201ENST00000315544 KRT2P35908 639 aa8.82□□□□□ -1
CNOT4-201ENST00000315544 HADHBP55084 474 aaKnown RBP8.82□□□□□ -1
CNOT4-201ENST00000315544 WTAPQ15007 396 aa8.82□□□□□ -1
CNOT4-201ENST00000315544 TRIM59Q8IWR1 403 aa8.82□□□□□ -1
CNOT4-201ENST00000315544 NAT10Q9H0A0 1025 aaKnown RBP8.82□□□□□ -1
CNOT4-201ENST00000315544 MAGEF1Q9HAY2 307 aa8.82□□□□□ -1
CNOT4-201ENST00000315544 MYMKA6NI61 221 aa8.82□□□□□ -1
CNOT4-201ENST00000315544 PAEPP09466 180 aa8.82□□□□□ -1
CNOT4-201ENST00000315544 ALAS1P13196 640 aa8.82□□□□□ -1
CNOT4-201ENST00000315544 HOXA7P31268 230 aaPredicted RBP8.82□□□□□ -1
CNOT4-201ENST00000315544 HNRNPH2P55795 449 aaKnown RBP8.82□□□□□ -1
CNOT4-201ENST00000315544 PDIA5Q14554 519 aa8.82□□□□□ -1
CNOT4-201ENST00000315544 KIAA1755Q5JYT7 1200 aa8.82□□□□□ -1
CNOT4-201ENST00000315544 CD101Q93033 1021 aa8.82□□□□□ -1
CNOT4-201ENST00000315544 SLC12A6Q9UHW9 1150 aa8.82□□□□□ -1
CNOT4-201ENST00000315544 TRMT112Q9UI30 125 aaKnown RBP8.82□□□□□ -1
CNOT4-201ENST00000315544 RPTORQ8N122 1335 aa8.82□□□□□ -1
CNOT4-201ENST00000315544 PARP1P09874 1014 aaKnown RBP8.82□□□□□ -1
CNOT4-201ENST00000315544 USP17L8P0C7I0 530 aa8.82□□□□□ -1
CNOT4-201ENST00000315544 ZNF131P52739 623 aa8.82□□□□□ -1
CNOT4-201ENST00000315544 PPATQ06203 517 aa8.82□□□□□ -1
CNOT4-201ENST00000315544 TTC38Q5R3I4 469 aa8.82□□□□□ -1
CNOT4-201ENST00000315544 LDLRAD1Q5T700 205 aa8.82□□□□□ -1
CNOT4-201ENST00000315544 BTNL9Q6UXG8 535 aa8.82□□□□□ -1
CNOT4-201ENST00000315544 CCDC73Q6ZRK6 1079 aa8.82□□□□□ -1
CNOT4-201ENST00000315544 TSEN2Q8NCE0 465 aaKnown RBP8.82□□□□□ -1
CNOT4-201ENST00000315544 EHD4Q9H223 541 aa8.82□□□□□ -1
CNOT4-201ENST00000315544 CUEDC2Q9H467 287 aa8.82□□□□□ -1
CNOT4-201ENST00000315544 CREBZFQ9NS37 354 aa8.82□□□□□ -1
CNOT4-201ENST00000315544 ANKFY1Q9P2R3 1169 aa8.82□□□□□ -1
CNOT4-201ENST00000315544 ADAM21Q9UKJ8 722 aa8.82□□□□□ -1
CNOT4-201ENST00000315544 SLC12A7Q9Y666 1083 aa8.82□□□□□ -1
CNOT4-201ENST00000315544 SRRM3A6NNA2 597 aaPredicted RBP8.81□□□□□ -1
CNOT4-201ENST00000315544 STBD1O95210 358 aa8.81□□□□□ -1
CNOT4-201ENST00000315544 KANK3Q6NY19 840 aa8.81□□□□□ -1
CNOT4-201ENST00000315544 RSBN1LQ6PCB5 846 aaPredicted RBP8.81□□□□□ -1
CNOT4-201ENST00000315544 KCNV1Q6PIU1 500 aa8.81□□□□□ -1
CNOT4-201ENST00000315544 CCNI2Q6ZMN8 369 aaPredicted RBP8.81□□□□□ -1
CNOT4-201ENST00000315544 ANKLE1Q8NAG6 615 aa8.81□□□□□ -1
CNOT4-201ENST00000315544 AKR1B15C9JRZ8 316 aaPredicted RBP8.81□□□□□ -1
CNOT4-201ENST00000315544 CIITAP33076 1130 aa8.81□□□□□ -1
CNOT4-201ENST00000315544 PRKCIP41743 596 aa8.81□□□□□ -1
CNOT4-201ENST00000315544 PPP2R3AQ06190 1150 aa8.81□□□□□ -1
CNOT4-201ENST00000315544 CXCL9Q07325 125 aa8.81□□□□□ -1
CNOT4-201ENST00000315544 ARHGAP29Q52LW3 1261 aa8.81□□□□□ -1
CNOT4-201ENST00000315544 MAGEB6P1A0A0J9YX57 407 aa8.81□□□□□ -1
CNOT4-201ENST00000315544 USP17L12C9JPN9 530 aa8.81□□□□□ -1
CNOT4-201ENST00000315544 USP17L21D6R901 530 aa8.81□□□□□ -1
CNOT4-201ENST00000315544 H3BQV1 296 aa8.81□□□□□ -1
CNOT4-201ENST00000315544 H7C1D1 291 aa8.81□□□□□ -1
CNOT4-201ENST00000315544 OAS1P00973 400 aaKnown RBP8.81□□□□□ -1
CNOT4-201ENST00000315544 CALM1P0DP23 149 aa8.81□□□□□ -1
CNOT4-201ENST00000315544 CALM2P0DP24 149 aa8.81□□□□□ -1
CNOT4-201ENST00000315544 CALM3P0DP25 149 aa8.81□□□□□ -1
CNOT4-201ENST00000315544 FCER1AP12319 257 aa8.81□□□□□ -1
CNOT4-201ENST00000315544 SHROOM1Q2M3G4 852 aaPredicted RBP8.81□□□□□ -1
CNOT4-201ENST00000315544 IFFO2Q5TF58 517 aa8.81□□□□□ -1
CNOT4-201ENST00000315544 CST9Q5W186 159 aa8.81□□□□□ -1
CNOT4-201ENST00000315544 ISM2Q6H9L7 571 aa8.81□□□□□ -1
CNOT4-201ENST00000315544 SLC35F6Q8N357 371 aa8.81□□□□□ -1
CNOT4-201ENST00000315544 AK8Q96MA6 479 aa8.81□□□□□ -1
CNOT4-201ENST00000315544 CEP89Q96ST8 783 aa8.81□□□□□ -1
CNOT4-201ENST00000315544 STK38Q15208 465 aa8.8□□□□□ -1
CNOT4-201ENST00000315544 TPD52L1Q16890 204 aaPredicted RBP8.8□□□□□ -1
CNOT4-201ENST00000315544 SPRED3Q2MJR0 410 aa8.8□□□□□ -1
CNOT4-201ENST00000315544 APOBEC3HQ6NTF7 200 aaKnown RBP8.8□□□□□ -1
CNOT4-201ENST00000315544 KAT2BQ92831 832 aa8.8□□□□□ -1
CNOT4-201ENST00000315544 SAGE1Q9NXZ1 904 aa8.8□□□□□ -1
CNOT4-201ENST00000315544 SERPINA10Q9UK55 444 aa8.8□□□□□ -1
CNOT4-201ENST00000315544 TRAF3IP3Q9Y228 551 aa8.8□□□□□ -1
CNOT4-201ENST00000315544 C5orf60A6NFR6 353 aa8.8□□□□□ -1
CNOT4-201ENST00000315544 PMM2O15305 246 aa8.8□□□□□ -1
CNOT4-201ENST00000315544 C21orf2O43822 256 aa8.8□□□□□ -1
CNOT4-201ENST00000315544 SFPQP23246 707 aaKnown RBP eCLIP8.8□□□□□ -1
CNOT4-201ENST00000315544 MOXD1Q6UVY6 613 aa8.8□□□□□ -1
CNOT4-201ENST00000315544 DHTKD1Q96HY7 919 aaPredicted RBP8.8□□□□□ -1
CNOT4-201ENST00000315544 HDAC6Q9UBN7 1215 aa8.8□□□□□ -1
CNOT4-201ENST00000315544 V9GY48 417 aaPredicted RBP8.8□□□□□ -1
CNOT4-201ENST00000315544 MYH9P35579 1960 aaKnown RBP8.8□□□□□ -1
CNOT4-201ENST00000315544 KCNJ18B7U540 433 aa8.79□□□□□ -1
CNOT4-201ENST00000315544 RAD51AP2Q09MP3 1159 aa8.79□□□□□ -1
CNOT4-201ENST00000315544 MAP3K12Q12852 859 aa8.79□□□□□ -1
CNOT4-201ENST00000315544 KCNJ12Q14500 433 aa8.79□□□□□ -1
CNOT4-201ENST00000315544 MEI1Q5TIA1 1274 aa8.79□□□□□ -1
CNOT4-201ENST00000315544 POTEEQ6S8J3 1075 aa8.79□□□□□ -1
CNOT4-201ENST00000315544 BLIDQ8IZY5 108 aa8.79□□□□□ -1
CNOT4-201ENST00000315544 MIGA1Q8NAN2 632 aa8.79□□□□□ -1
CNOT4-201ENST00000315544 RETREG2Q8NC44 543 aa8.79□□□□□ -1
CNOT4-201ENST00000315544 WASF1Q92558 559 aa8.79□□□□□ -1
CNOT4-201ENST00000315544 WRAP73Q9P2S5 460 aaPredicted RBP8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms