RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 SMARCA1P28370 1054 aa18.84■□□□□ 0.61
LSM1-201ENST00000311351 SAMD3Q8N6K7 520 aa18.84■□□□□ 0.61
LSM1-201ENST00000311351 FANCBQ8NB91 859 aa18.84■□□□□ 0.61
LSM1-201ENST00000311351 PPP1R13LQ8WUF5 828 aa18.84■□□□□ 0.61
LSM1-201ENST00000311351 KCNB2Q92953 911 aa18.84■□□□□ 0.61
LSM1-201ENST00000311351 JAKMIP1Q96N16 626 aaKnown RBP18.84■□□□□ 0.61
LSM1-201ENST00000311351 POLR3EQ9NVU0 708 aa18.84■□□□□ 0.61
LSM1-201ENST00000311351 CNTNAP5Q8WYK1 1306 aa18.83■□□□□ 0.61
LSM1-201ENST00000311351 A6NJR5 290 aa18.83■□□□□ 0.6
LSM1-201ENST00000311351 TLR3O15455 904 aaKnown RBP18.83■□□□□ 0.6
LSM1-201ENST00000311351 EIF3JO75822 258 aaKnown RBP18.83■□□□□ 0.6
LSM1-201ENST00000311351 RGS20O76081 388 aa18.83■□□□□ 0.6
LSM1-201ENST00000311351 CD4P01730 458 aa18.83■□□□□ 0.6
LSM1-201ENST00000311351 EPHB4P54760 987 aa18.83■□□□□ 0.6
LSM1-201ENST00000311351 ARHGAP1Q07960 439 aa18.83■□□□□ 0.6
LSM1-201ENST00000311351 LRIT3Q3SXY7 679 aa18.83■□□□□ 0.6
LSM1-201ENST00000311351 SYNE3Q6ZMZ3 975 aa18.83■□□□□ 0.6
LSM1-201ENST00000311351 PPP1R12CQ9BZL4 782 aa18.83■□□□□ 0.6
LSM1-201ENST00000311351 MRVI1Q9Y6F6 885 aa18.83■□□□□ 0.6
LSM1-201ENST00000311351 LAMA2P24043 3122 aaKnown RBP18.83■□□□□ 0.6
LSM1-201ENST00000311351 DOCK5Q9H7D0 1870 aa18.83■□□□□ 0.6
LSM1-201ENST00000311351 FRMPD4Q14CM0 1322 aa18.82■□□□□ 0.6
LSM1-201ENST00000311351 KLF18A0A0U1RQI7 1052 aa18.82■□□□□ 0.6
LSM1-201ENST00000311351 ZBTB43O43298 467 aa18.82■□□□□ 0.6
LSM1-201ENST00000311351 SORBS3O60504 671 aa18.82■□□□□ 0.6
LSM1-201ENST00000311351 REC8O95072 547 aa18.82■□□□□ 0.6
LSM1-201ENST00000311351 GH1P01241 217 aa18.82■□□□□ 0.6
LSM1-201ENST00000311351 SHHQ15465 462 aa18.82■□□□□ 0.6
LSM1-201ENST00000311351 RTN1Q16799 776 aa18.82■□□□□ 0.6
LSM1-201ENST00000311351 USP17L6PQ6QN14 398 aa18.82■□□□□ 0.6
LSM1-201ENST00000311351 AFG1LQ8WV93 481 aa18.82■□□□□ 0.6
LSM1-201ENST00000311351 GPKOWQ92917 476 aaPredicted RBP eCLIP18.82■□□□□ 0.6
LSM1-201ENST00000311351 MTG1Q9BT17 334 aaPredicted RBP18.82■□□□□ 0.6
LSM1-201ENST00000311351 TRPV6Q9H1D0 765 aa18.82■□□□□ 0.6
LSM1-201ENST00000311351 DDX41Q9UJV9 622 aaKnown RBP18.82■□□□□ 0.6
LSM1-201ENST00000311351 GOLGA8AA7E2F4 631 aa18.81■□□□□ 0.6
LSM1-201ENST00000311351 GOLGA8BA8MQT2 603 aa18.81■□□□□ 0.6
LSM1-201ENST00000311351 B4GALT4O60513 344 aa18.81■□□□□ 0.6
LSM1-201ENST00000311351 TIMP1P01033 207 aa18.81■□□□□ 0.6
LSM1-201ENST00000311351 MMP3P08254 477 aa18.81■□□□□ 0.6
LSM1-201ENST00000311351 HMGB1P09429 215 aaKnown RBP18.81■□□□□ 0.6
LSM1-201ENST00000311351 CCND2P30279 289 aa18.81■□□□□ 0.6
LSM1-201ENST00000311351 FPGSQ05932 587 aa18.81■□□□□ 0.6
LSM1-201ENST00000311351 BRDTQ58F21 947 aaPredicted RBP18.81■□□□□ 0.6
LSM1-201ENST00000311351 VSIG10LQ86VR7 867 aa18.81■□□□□ 0.6
LSM1-201ENST00000311351 NAP1L2Q9ULW6 460 aaPredicted RBP18.81■□□□□ 0.6
LSM1-201ENST00000311351 UMODL1Q5DID0 1318 aa18.8■□□□□ 0.6
LSM1-201ENST00000311351 MEIS2O14770 477 aa18.8■□□□□ 0.6
LSM1-201ENST00000311351 BLOC1S2Q6QNY1 142 aa18.8■□□□□ 0.6
LSM1-201ENST00000311351 HEATR3Q7Z4Q2 680 aa18.8■□□□□ 0.6
LSM1-201ENST00000311351 SMARCC2Q8TAQ2 1214 aa18.8■□□□□ 0.6
LSM1-201ENST00000311351 ALDH8A1Q9H2A2 487 aaPredicted RBP18.8■□□□□ 0.6
LSM1-201ENST00000311351 RBM28Q9NW13 759 aaKnown RBP18.8■□□□□ 0.6
LSM1-201ENST00000311351 CDC27P30260 824 aa18.79■□□□□ 0.6
LSM1-201ENST00000311351 CYP2C18P33260 490 aa18.79■□□□□ 0.6
LSM1-201ENST00000311351 CHMP4BP1P59074 171 aa18.79■□□□□ 0.6
LSM1-201ENST00000311351 MRPS9P82933 396 aaKnown RBP18.79■□□□□ 0.6
LSM1-201ENST00000311351 FGD1P98174 961 aa18.79■□□□□ 0.6
LSM1-201ENST00000311351 APOBRQ0VD83 1088 aa18.79■□□□□ 0.6
LSM1-201ENST00000311351 FUT2Q10981 343 aa18.79■□□□□ 0.6
LSM1-201ENST00000311351 NBPF20Q3BBV1 942 aa18.79■□□□□ 0.6
LSM1-201ENST00000311351 FAM47CQ5HY64 1035 aa18.79■□□□□ 0.6
LSM1-201ENST00000311351 ERICH6BQ5W0A0 696 aa18.79■□□□□ 0.6
LSM1-201ENST00000311351 Q6ZUG5 572 aa18.79■□□□□ 0.6
LSM1-201ENST00000311351 BRF1Q92994 677 aa18.79■□□□□ 0.6
LSM1-201ENST00000311351 CUL5Q93034 780 aa18.79■□□□□ 0.6
LSM1-201ENST00000311351 TRMT13Q9NUP7 481 aaKnown RBP18.79■□□□□ 0.6
LSM1-201ENST00000311351 TANC1Q9C0D5 1861 aa18.78■□□□□ 0.6
LSM1-201ENST00000311351 CASTP20810 708 aaKnown RBP18.78■□□□□ 0.6
LSM1-201ENST00000311351 UBA1P22314 1058 aaKnown RBP18.78■□□□□ 0.6
LSM1-201ENST00000311351 RPS6KB1P23443 525 aa18.78■□□□□ 0.6
LSM1-201ENST00000311351 UBE2SQ16763 222 aa18.78■□□□□ 0.6
LSM1-201ENST00000311351 WWC2Q6AWC2 1192 aa18.78■□□□□ 0.6
LSM1-201ENST00000311351 MFSD5Q6N075 450 aa18.78■□□□□ 0.6
LSM1-201ENST00000311351 NOC4LQ9BVI4 516 aaKnown RBP18.78■□□□□ 0.6
LSM1-201ENST00000311351 HIPK3Q9H422 1215 aa18.78■□□□□ 0.6
LSM1-201ENST00000311351 FAM217BQ9NTX9 383 aaPredicted RBP18.78■□□□□ 0.6
LSM1-201ENST00000311351 PIK3CDO00329 1044 aa18.77■□□□□ 0.6
LSM1-201ENST00000311351 KPNA6O60684 536 aa18.77■□□□□ 0.6
LSM1-201ENST00000311351 GGPS1O95749 300 aa18.77■□□□□ 0.6
LSM1-201ENST00000311351 ZNF286BP0CG31 522 aa18.77■□□□□ 0.6
LSM1-201ENST00000311351 CSF2RAP15509 400 aa18.77■□□□□ 0.6
LSM1-201ENST00000311351 SP2Q02086 613 aa18.77■□□□□ 0.6
LSM1-201ENST00000311351 TYW1BQ6NUM6 668 aa18.77■□□□□ 0.6
LSM1-201ENST00000311351 DHX37Q8IY37 1157 aaKnown RBP18.77■□□□□ 0.6
LSM1-201ENST00000311351 EMID1Q96A84 441 aaPredicted RBP18.77■□□□□ 0.6
LSM1-201ENST00000311351 RNPC3Q96LT9 517 aaKnown RBP18.77■□□□□ 0.6
LSM1-201ENST00000311351 SEZ6LQ9BYH1 1024 aa18.77■□□□□ 0.6
LSM1-201ENST00000311351 PSTPIP2Q9H939 334 aa18.77■□□□□ 0.6
LSM1-201ENST00000311351 SCN5AQ14524 2016 aa18.77■□□□□ 0.6
LSM1-201ENST00000311351 CYP2C9P11712 490 aa18.76■□□□□ 0.59
LSM1-201ENST00000311351 METAP2P50579 478 aaKnown RBP eCLIP18.76■□□□□ 0.59
LSM1-201ENST00000311351 SEMA3FQ13275 785 aa18.76■□□□□ 0.59
LSM1-201ENST00000311351 CELF3Q5SZQ8 465 aaKnown RBP18.76■□□□□ 0.59
LSM1-201ENST00000311351 Q7L0L9 218 aa18.76■□□□□ 0.59
LSM1-201ENST00000311351 PPTC7Q8NI37 304 aa18.76■□□□□ 0.59
LSM1-201ENST00000311351 KAT2BQ92831 832 aa18.76■□□□□ 0.59
LSM1-201ENST00000311351 INPP4AQ96PE3 977 aaPredicted RBP18.76■□□□□ 0.59
LSM1-201ENST00000311351 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.76■□□□□ 0.59
LSM1-201ENST00000311351 WNT8AQ9H1J5 351 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms