RNA–Protein interactions for RNA: ENST00000309017.7

PTPN7-201, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPN7, Length 3,765 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-201ENST00000309017 FIGNQ5HY92 759 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 TBC1D5Q92609 795 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 ATP6V1G3Q96LB4 118 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 SEMA6BQ9H3T3 888 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 CD248Q9HCU0 757 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 TFCP2L1Q9NZI6 479 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 TBC1D7Q9P0N9 293 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 NUP188Q5SRE5 1749 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 LRP6O75581 1613 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 ZNF233A6NK53 670 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 CEP104O60308 925 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 USP17L8P0C7I0 530 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 CCDC172P0C7W6 258 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 EPB41P11171 864 aaKnown RBP12.29□□□□□ -0.44
PTPN7-201ENST00000309017 CTNNA1P35221 906 aaKnown RBP12.29□□□□□ -0.44
PTPN7-201ENST00000309017 SWT1Q5T5J6 900 aaKnown RBP12.29□□□□□ -0.44
PTPN7-201ENST00000309017 KLHDC7AQ5VTJ3 777 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 LSM14BQ9BX40 385 aaKnown RBP12.29□□□□□ -0.44
PTPN7-201ENST00000309017 MAGEF1Q9HAY2 307 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 SEC63Q9UGP8 760 aaKnown RBP12.29□□□□□ -0.44
PTPN7-201ENST00000309017 PKD1L3Q7Z443 1732 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 USP17L3A6NCW0 530 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 USP17L4A6NCW7 530 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 ERVV-1B6SEH8 477 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 NF2P35240 595 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 MDH1P40925 334 aaKnown RBP12.29□□□□□ -0.44
PTPN7-201ENST00000309017 PTGISQ16647 500 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 TMEM266Q2M3C6 531 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 KDM7AQ6ZMT4 941 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 USP17L1Q7RTZ2 530 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 PROCA1Q8NCQ7 364 aaPredicted RBP12.29□□□□□ -0.44
PTPN7-201ENST00000309017 DYNLL2Q96FJ2 89 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 KANSL2Q9H9L4 492 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 KIF13AQ9H1H9 1805 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 CHD4Q14839 1912 aa12.29□□□□□ -0.44
PTPN7-201ENST00000309017 IL6STP40189 918 aaPredicted RBP12.28□□□□□ -0.44
PTPN7-201ENST00000309017 IFFO1Q0D2I5 559 aa12.28□□□□□ -0.44
PTPN7-201ENST00000309017 KLHL30Q0D2K2 578 aa12.28□□□□□ -0.44
PTPN7-201ENST00000309017 ZNF34Q8IZ26 560 aa12.28□□□□□ -0.44
PTPN7-201ENST00000309017 CNPY4Q8N129 248 aa12.28□□□□□ -0.44
PTPN7-201ENST00000309017 KIAA0895Q8NCT3 520 aa12.28□□□□□ -0.44
PTPN7-201ENST00000309017 OR2W6PQ8NHA6 318 aa12.28□□□□□ -0.44
PTPN7-201ENST00000309017 AK8Q96MA6 479 aa12.28□□□□□ -0.44
PTPN7-201ENST00000309017 C6orf50Q9HD87 102 aa12.28□□□□□ -0.44
PTPN7-201ENST00000309017 SMCO2A6NFE2 343 aa12.28□□□□□ -0.44
PTPN7-201ENST00000309017 LAD1O00515 517 aa12.28□□□□□ -0.44
PTPN7-201ENST00000309017 MECOMQ03112 1051 aa12.28□□□□□ -0.44
PTPN7-201ENST00000309017 ACTN3Q08043 901 aaPredicted RBP12.28□□□□□ -0.44
PTPN7-201ENST00000309017 KCTD19Q17RG1 926 aaPredicted RBP12.28□□□□□ -0.44
PTPN7-201ENST00000309017 PDXDC1Q6P996 788 aa12.28□□□□□ -0.44
PTPN7-201ENST00000309017 MYCBPAPQ8TBZ2 947 aa12.28□□□□□ -0.44
PTPN7-201ENST00000309017 WHAMMQ8TF30 809 aa12.28□□□□□ -0.44
PTPN7-201ENST00000309017 CASKIN2Q8WXE0 1202 aa12.28□□□□□ -0.44
PTPN7-201ENST00000309017 BIN2Q9UBW5 565 aaPredicted RBP12.28□□□□□ -0.44
PTPN7-201ENST00000309017 ADAMTS1Q9UHI8 967 aa12.28□□□□□ -0.44
PTPN7-201ENST00000309017 DDX60Q8IY21 1712 aaKnown RBP12.28□□□□□ -0.44
PTPN7-201ENST00000309017 HMGB1P1B2RPK0 211 aaPredicted RBP12.28□□□□□ -0.44
PTPN7-201ENST00000309017 ORC4O43929 436 aa12.28□□□□□ -0.44
PTPN7-201ENST00000309017 RPS6KA1Q15418 735 aa12.28□□□□□ -0.44
PTPN7-201ENST00000309017 TRADDQ15628 312 aa12.28□□□□□ -0.44
PTPN7-201ENST00000309017 KRT25Q7Z3Z0 450 aa12.28□□□□□ -0.44
PTPN7-201ENST00000309017 CPLX4Q7Z7G2 160 aa12.28□□□□□ -0.44
PTPN7-201ENST00000309017 NEK8Q86SG6 692 aa12.28□□□□□ -0.44
PTPN7-201ENST00000309017 NELFCDQ8IXH7 590 aa12.28□□□□□ -0.44
PTPN7-201ENST00000309017 UIMC1Q96RL1 719 aa12.28□□□□□ -0.44
PTPN7-201ENST00000309017 ARPP21Q9UBL0 812 aaPredicted RBP12.28□□□□□ -0.44
PTPN7-201ENST00000309017 RNF14Q9UBS8 474 aa12.28□□□□□ -0.44
PTPN7-201ENST00000309017 PRPF38AQ8NAV1 312 aaKnown RBP12.27□□□□□ -0.44
PTPN7-201ENST00000309017 C7orf25Q9BPX7 421 aa12.27□□□□□ -0.44
PTPN7-201ENST00000309017 SH3GLB2Q9NR46 395 aa12.27□□□□□ -0.44
PTPN7-201ENST00000309017 BCL9LQ86UU0 1499 aa12.27□□□□□ -0.45
PTPN7-201ENST00000309017 TULP1O00294 542 aaPredicted RBP12.27□□□□□ -0.45
PTPN7-201ENST00000309017 RAD51CO43502 376 aa12.27□□□□□ -0.45
PTPN7-201ENST00000309017 KLRC1P26715 233 aa12.27□□□□□ -0.45
PTPN7-201ENST00000309017 PRDX5P30044 214 aa12.27□□□□□ -0.45
PTPN7-201ENST00000309017 ZSCAN29Q8IWY8 852 aaPredicted RBP12.27□□□□□ -0.45
PTPN7-201ENST00000309017 RNF10Q8N5U6 811 aaKnown RBP12.27□□□□□ -0.45
PTPN7-201ENST00000309017 SNX29Q8TEQ0 813 aa12.27□□□□□ -0.45
PTPN7-201ENST00000309017 LRRC15Q8TF66 581 aa12.27□□□□□ -0.45
PTPN7-201ENST00000309017 SPAG5Q96R06 1193 aa12.27□□□□□ -0.45
PTPN7-201ENST00000309017 KLC4Q9NSK0 619 aa12.27□□□□□ -0.45
PTPN7-201ENST00000309017 SIK3Q9Y2K2 1263 aa12.27□□□□□ -0.45
PTPN7-201ENST00000309017 KLRF2D3W0D1 207 aa12.27□□□□□ -0.45
PTPN7-201ENST00000309017 KRT18P05783 430 aaKnown RBP12.27□□□□□ -0.45
PTPN7-201ENST00000309017 GNA11P29992 359 aa12.27□□□□□ -0.45
PTPN7-201ENST00000309017 FAM133AQ8N9E0 248 aa12.27□□□□□ -0.45
PTPN7-201ENST00000309017 TBCKQ8TEA7 893 aa12.27□□□□□ -0.45
PTPN7-201ENST00000309017 LARP4BQ92615 738 aaKnown RBP12.27□□□□□ -0.45
PTPN7-201ENST00000309017 SLC4A9Q96Q91 983 aa12.27□□□□□ -0.45
PTPN7-201ENST00000309017 AP1M1Q9BXS5 423 aa12.27□□□□□ -0.45
PTPN7-201ENST00000309017 TRIM31Q9BZY9 425 aa12.27□□□□□ -0.45
PTPN7-201ENST00000309017 BMP2KQ9NSY1 1161 aaPredicted RBP12.27□□□□□ -0.45
PTPN7-201ENST00000309017 DISP2A7MBM2 1401 aa12.27□□□□□ -0.45
PTPN7-201ENST00000309017 FAM170AA1A519 330 aa12.26□□□□□ -0.45
PTPN7-201ENST00000309017 CHUKO15111 745 aa12.26□□□□□ -0.45
PTPN7-201ENST00000309017 KRT79Q5XKE5 535 aa12.26□□□□□ -0.45
PTPN7-201ENST00000309017 DDX42Q86XP3 938 aaKnown RBP eCLIP12.26□□□□□ -0.45
PTPN7-201ENST00000309017 IQCKQ8N0W5 287 aa12.26□□□□□ -0.45
PTPN7-201ENST00000309017 LRRC45Q96CN5 670 aa12.26□□□□□ -0.45
PTPN7-201ENST00000309017 RAB34Q9BZG1 259 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms