RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 GGA3Q9NZ52 723 aa12.07□□□□□ -0.48
LSM3-201ENST00000306024 ADGRG1Q9Y653 693 aa12.07□□□□□ -0.48
LSM3-201ENST00000306024 SAR1BQ9Y6B6 198 aa12.07□□□□□ -0.48
LSM3-201ENST00000306024 A6NNZ2 444 aa12.07□□□□□ -0.48
LSM3-201ENST00000306024 BUB1BO60566 1050 aaPredicted RBP12.07□□□□□ -0.48
LSM3-201ENST00000306024 HPDP32754 393 aaPredicted RBP12.07□□□□□ -0.48
LSM3-201ENST00000306024 ZKSCAN8Q15776 578 aaPredicted RBP12.07□□□□□ -0.48
LSM3-201ENST00000306024 TUBB8Q3ZCM7 444 aa12.07□□□□□ -0.48
LSM3-201ENST00000306024 COG1Q8WTW3 980 aa12.07□□□□□ -0.48
LSM3-201ENST00000306024 AIFM3Q96NN9 605 aa12.07□□□□□ -0.48
LSM3-201ENST00000306024 NAA15Q9BXJ9 866 aaKnown RBP12.07□□□□□ -0.48
LSM3-201ENST00000306024 BAZ2BQ9UIF8 2168 aaKnown RBP12.07□□□□□ -0.48
LSM3-201ENST00000306024 GOLGA8KD6RF30 607 aa12.07□□□□□ -0.48
LSM3-201ENST00000306024 E7EVH7 732 aa12.07□□□□□ -0.48
LSM3-201ENST00000306024 PLEKHA8P1O95397 391 aa12.07□□□□□ -0.48
LSM3-201ENST00000306024 GCFC2P16383 781 aaKnown RBP12.07□□□□□ -0.48
LSM3-201ENST00000306024 IFNAR1P17181 557 aa12.07□□□□□ -0.48
LSM3-201ENST00000306024 SUPT20HL1Q3ZLR7 823 aa12.07□□□□□ -0.48
LSM3-201ENST00000306024 CFAP58Q5T655 872 aa12.07□□□□□ -0.48
LSM3-201ENST00000306024 CALR3Q96L12 384 aaKnown RBP12.07□□□□□ -0.48
LSM3-201ENST00000306024 HERC5Q9UII4 1024 aaKnown RBP12.07□□□□□ -0.48
LSM3-201ENST00000306024 HACL1Q9UJ83 578 aa12.07□□□□□ -0.48
LSM3-201ENST00000306024 KCNH3Q9ULD8 1083 aa12.07□□□□□ -0.48
LSM3-201ENST00000306024 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.07□□□□□ -0.48
LSM3-201ENST00000306024 SLURP2P0DP57 97 aa12.06□□□□□ -0.48
LSM3-201ENST00000306024 DNA2P51530 1060 aa12.06□□□□□ -0.48
LSM3-201ENST00000306024 TBC1D31Q96DN5 1066 aa12.06□□□□□ -0.48
LSM3-201ENST00000306024 DEFB129Q9H1M3 183 aa12.06□□□□□ -0.48
LSM3-201ENST00000306024 EHD4Q9H223 541 aa12.06□□□□□ -0.48
LSM3-201ENST00000306024 RAB21Q9UL25 225 aa12.06□□□□□ -0.48
LSM3-201ENST00000306024 LAMB2P55268 1798 aa12.06□□□□□ -0.48
LSM3-201ENST00000306024 PPP1R12BO60237 982 aaPredicted RBP12.06□□□□□ -0.48
LSM3-201ENST00000306024 EPS15P42566 896 aa12.06□□□□□ -0.48
LSM3-201ENST00000306024 PAFAH1B1P43034 410 aa12.06□□□□□ -0.48
LSM3-201ENST00000306024 RBL2Q08999 1139 aa12.06□□□□□ -0.48
LSM3-201ENST00000306024 NCAPHQ15003 741 aa12.06□□□□□ -0.48
LSM3-201ENST00000306024 TMTC1Q8IUR5 882 aa12.06□□□□□ -0.48
LSM3-201ENST00000306024 APOBEC3FQ8IUX4 373 aaKnown RBP12.06□□□□□ -0.48
LSM3-201ENST00000306024 DIS3L2Q8IYB7 885 aaKnown RBP12.06□□□□□ -0.48
LSM3-201ENST00000306024 KIRREL3Q8IZU9 778 aa12.06□□□□□ -0.48
LSM3-201ENST00000306024 TC2NQ8N9U0 490 aa12.06□□□□□ -0.48
LSM3-201ENST00000306024 KIFC2Q96AC6 838 aa12.06□□□□□ -0.48
LSM3-201ENST00000306024 MIEF2Q96C03 454 aa12.06□□□□□ -0.48
LSM3-201ENST00000306024 SELENOOQ9BVL4 669 aa12.06□□□□□ -0.48
LSM3-201ENST00000306024 IDI2Q9BXS1 227 aa12.06□□□□□ -0.48
LSM3-201ENST00000306024 CPVLQ9H3G5 476 aa12.06□□□□□ -0.48
LSM3-201ENST00000306024 FAM198AQ9UFP1 575 aa12.06□□□□□ -0.48
LSM3-201ENST00000306024 HPCAL4Q9UM19 191 aa12.06□□□□□ -0.48
LSM3-201ENST00000306024 IRX1P78414 480 aaPredicted RBP12.06□□□□□ -0.48
LSM3-201ENST00000306024 SPDYE2Q495Y8 402 aa12.06□□□□□ -0.48
LSM3-201ENST00000306024 KCTD1Q719H9 257 aa12.06□□□□□ -0.48
LSM3-201ENST00000306024 LZTS2Q9BRK4 669 aa12.06□□□□□ -0.48
LSM3-201ENST00000306024 POLD4Q9HCU8 107 aa12.06□□□□□ -0.48
LSM3-201ENST00000306024 PPANQ9NQ55 473 aaKnown RBP12.06□□□□□ -0.48
LSM3-201ENST00000306024 GJB4Q9NTQ9 266 aa12.06□□□□□ -0.48
LSM3-201ENST00000306024 EIF3HO15372 352 aaKnown RBP eCLIP12.05□□□□□ -0.48
LSM3-201ENST00000306024 MEFVO15553 781 aaPredicted RBP12.05□□□□□ -0.48
LSM3-201ENST00000306024 AFMP43652 599 aa12.05□□□□□ -0.48
LSM3-201ENST00000306024 EGFL6Q8IUX8 553 aa12.05□□□□□ -0.48
LSM3-201ENST00000306024 GPC2Q8N158 579 aa12.05□□□□□ -0.48
LSM3-201ENST00000306024 CTAGE1Q96RT6 745 aa12.05□□□□□ -0.48
LSM3-201ENST00000306024 VIPAS39Q9H9C1 493 aa12.05□□□□□ -0.48
LSM3-201ENST00000306024 AKAP11Q9UKA4 1901 aa12.05□□□□□ -0.48
LSM3-201ENST00000306024 EEF2P13639 858 aaKnown RBP12.05□□□□□ -0.48
LSM3-201ENST00000306024 CALML3P27482 149 aa12.05□□□□□ -0.48
LSM3-201ENST00000306024 CASP14P31944 242 aa12.05□□□□□ -0.48
LSM3-201ENST00000306024 RBBP5Q15291 538 aaKnown RBP12.05□□□□□ -0.48
LSM3-201ENST00000306024 MLKLQ8NB16 471 aa12.05□□□□□ -0.48
LSM3-201ENST00000306024 EHBP1Q8NDI1 1231 aa12.05□□□□□ -0.48
LSM3-201ENST00000306024 MTMR4Q9NYA4 1195 aa12.05□□□□□ -0.48
LSM3-201ENST00000306024 ZNF541Q9H0D2 1346 aa12.05□□□□□ -0.48
LSM3-201ENST00000306024 ASNSP08243 561 aa12.05□□□□□ -0.48
LSM3-201ENST00000306024 KRT9P35527 623 aa12.05□□□□□ -0.48
LSM3-201ENST00000306024 CYP26C1Q6V0L0 522 aa12.05□□□□□ -0.48
LSM3-201ENST00000306024 ARMC2Q8NEN0 867 aa12.05□□□□□ -0.48
LSM3-201ENST00000306024 GPKOWQ92917 476 aaPredicted RBP eCLIP12.05□□□□□ -0.48
LSM3-201ENST00000306024 RNF26Q9BY78 433 aaPredicted RBP12.05□□□□□ -0.48
LSM3-201ENST00000306024 GOPCQ9HD26 462 aa12.05□□□□□ -0.48
LSM3-201ENST00000306024 SAMSN1Q9NSI8 373 aaKnown RBP12.05□□□□□ -0.48
LSM3-201ENST00000306024 CSADQ9Y600 493 aa12.05□□□□□ -0.48
LSM3-201ENST00000306024 KRT86O43790 486 aa12.04□□□□□ -0.48
LSM3-201ENST00000306024 KIF4AO95239 1232 aa12.04□□□□□ -0.48
LSM3-201ENST00000306024 IDEP14735 1019 aa12.04□□□□□ -0.48
LSM3-201ENST00000306024 SLC16A2P36021 539 aa12.04□□□□□ -0.48
LSM3-201ENST00000306024 KRT26Q7Z3Y9 468 aa12.04□□□□□ -0.48
LSM3-201ENST00000306024 RNF217Q8TC41 542 aa12.04□□□□□ -0.48
LSM3-201ENST00000306024 USP17L5A8MUK1 530 aa12.04□□□□□ -0.48
LSM3-201ENST00000306024 FMNL1O95466 1100 aaPredicted RBP12.04□□□□□ -0.48
LSM3-201ENST00000306024 SLC8A1P32418 973 aa12.04□□□□□ -0.48
LSM3-201ENST00000306024 KRT2P35908 639 aa12.04□□□□□ -0.48
LSM3-201ENST00000306024 VAV2P52735 878 aa12.04□□□□□ -0.48
LSM3-201ENST00000306024 WRNIP1Q96S55 665 aa12.04□□□□□ -0.48
LSM3-201ENST00000306024 SGIP1Q9BQI5 828 aa12.04□□□□□ -0.48
LSM3-201ENST00000306024 AGXT2Q9BYV1 514 aa12.04□□□□□ -0.48
LSM3-201ENST00000306024 TANGO6Q9C0B7 1094 aa12.04□□□□□ -0.48
LSM3-201ENST00000306024 VPS16Q9H269 839 aa12.04□□□□□ -0.48
LSM3-201ENST00000306024 C6orf50Q9HD87 102 aa12.04□□□□□ -0.48
LSM3-201ENST00000306024 HPS5Q9UPZ3 1129 aa12.04□□□□□ -0.48
LSM3-201ENST00000306024 KIF3CO14782 793 aa12.04□□□□□ -0.48
LSM3-201ENST00000306024 SCG2P13521 617 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms