RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 ALS2CLQ60I27 953 aa9.43□□□□□ -0.9
NIPBL-201ENST00000282516 FAM96AQ9H5X1 160 aa9.43□□□□□ -0.9
NIPBL-201ENST00000282516 ARPP21Q9UBL0 812 aaPredicted RBP9.43□□□□□ -0.9
NIPBL-201ENST00000282516 TRPC5Q9UL62 973 aaPredicted RBP9.43□□□□□ -0.9
NIPBL-201ENST00000282516 IQANK1A0A1B0GTG1 560 aa9.43□□□□□ -0.9
NIPBL-201ENST00000282516 MDM2Q00987 491 aaPredicted RBP9.43□□□□□ -0.9
NIPBL-201ENST00000282516 C10orf76Q5T2E6 689 aa9.43□□□□□ -0.9
NIPBL-201ENST00000282516 NOSTRINQ8IVI9 506 aa9.43□□□□□ -0.9
NIPBL-201ENST00000282516 KCTD6Q8NC69 237 aa9.43□□□□□ -0.9
NIPBL-201ENST00000282516 ANKRD36BP1Q96IX9 119 aa9.43□□□□□ -0.9
NIPBL-201ENST00000282516 KIF2CQ99661 725 aa9.43□□□□□ -0.9
NIPBL-201ENST00000282516 TMEM60Q9H2L4 133 aa9.43□□□□□ -0.9
NIPBL-201ENST00000282516 AATFQ9NY61 560 aaKnown RBP eCLIP9.43□□□□□ -0.9
NIPBL-201ENST00000282516 DDX25Q9UHL0 483 aaKnown RBP9.43□□□□□ -0.9
NIPBL-201ENST00000282516 DBNLQ9UJU6 430 aaKnown RBP9.43□□□□□ -0.9
NIPBL-201ENST00000282516 MRFAP1Q9Y605 127 aa9.43□□□□□ -0.9
NIPBL-201ENST00000282516 SSH2Q76I76 1423 aa9.43□□□□□ -0.9
NIPBL-201ENST00000282516 IPO5O00410 1097 aaKnown RBP9.43□□□□□ -0.9
NIPBL-201ENST00000282516 MAPK13O15264 365 aa9.43□□□□□ -0.9
NIPBL-201ENST00000282516 CFLARO15519 480 aa9.43□□□□□ -0.9
NIPBL-201ENST00000282516 GTPBP6O43824 516 aaPredicted RBP9.43□□□□□ -0.9
NIPBL-201ENST00000282516 HIBADHP31937 336 aaKnown RBP9.43□□□□□ -0.9
NIPBL-201ENST00000282516 CARSP49589 748 aaKnown RBP9.43□□□□□ -0.9
NIPBL-201ENST00000282516 EXOC3L4Q17RC7 722 aa9.43□□□□□ -0.9
NIPBL-201ENST00000282516 TAGAPQ8N103 731 aa9.43□□□□□ -0.9
NIPBL-201ENST00000282516 NDUFAF2Q8N183 169 aa9.43□□□□□ -0.9
NIPBL-201ENST00000282516 GCNAQ96QF7 691 aa9.43□□□□□ -0.9
NIPBL-201ENST00000282516 JPH2Q9BR39 696 aaPredicted RBP9.43□□□□□ -0.9
NIPBL-201ENST00000282516 KLC2Q9H0B6 622 aa9.43□□□□□ -0.9
NIPBL-201ENST00000282516 SH3TC1Q8TE82 1336 aa9.43□□□□□ -0.9
NIPBL-201ENST00000282516 EIF3DO15371 548 aaKnown RBP eCLIP9.43□□□□□ -0.9
NIPBL-201ENST00000282516 KRT1P04264 644 aa9.43□□□□□ -0.9
NIPBL-201ENST00000282516 EIF3BP55884 814 aaKnown RBP9.43□□□□□ -0.9
NIPBL-201ENST00000282516 CACTINQ8WUQ7 758 aaKnown RBP9.43□□□□□ -0.9
NIPBL-201ENST00000282516 NDE1Q9NXR1 346 aa9.43□□□□□ -0.9
NIPBL-201ENST00000282516 ARHGAP10A1A4S6 786 aa9.43□□□□□ -0.9
NIPBL-201ENST00000282516 DHX9Q08211 1270 aaKnown RBP9.43□□□□□ -0.9
NIPBL-201ENST00000282516 CAPRIN1Q14444 709 aaKnown RBP9.43□□□□□ -0.9
NIPBL-201ENST00000282516 MORF4L2Q15014 288 aa9.43□□□□□ -0.9
NIPBL-201ENST00000282516 ZYXQ15942 572 aaKnown RBP9.43□□□□□ -0.9
NIPBL-201ENST00000282516 NIM1KQ8IY84 436 aa9.43□□□□□ -0.9
NIPBL-201ENST00000282516 GPBP1L1Q9HC44 474 aaPredicted RBP9.43□□□□□ -0.9
NIPBL-201ENST00000282516 TRPM2O94759 1503 aa9.43□□□□□ -0.9
NIPBL-201ENST00000282516 DISP3Q9P2K9 1392 aa9.43□□□□□ -0.9
NIPBL-201ENST00000282516 ARL13BQ3SXY8 428 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 C8orf34Q49A92 452 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 KCTD16Q68DU8 428 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 GFM2Q969S9 779 aaKnown RBP9.42□□□□□ -0.9
NIPBL-201ENST00000282516 NT5C1BQ96P26 610 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 CUEDC2Q9H467 287 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 HNRNPDLO14979 420 aaKnown RBP9.42□□□□□ -0.9
NIPBL-201ENST00000282516 PLS3P13797 630 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 DDX5P17844 614 aaKnown RBP9.42□□□□□ -0.9
NIPBL-201ENST00000282516 CUL1Q13616 776 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 CYP4F22Q6NT55 531 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 KRT87PA6NCN2 255 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 RPSAP08865 295 aaKnown RBP9.42□□□□□ -0.9
NIPBL-201ENST00000282516 MYO1EQ12965 1108 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 E2F5Q15329 346 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 XKR9Q5GH70 373 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 AS3MTQ9HBK9 375 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 ARHGAP26Q9UNA1 814 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 MRPL11Q9Y3B7 192 aaKnown RBP9.42□□□□□ -0.9
NIPBL-201ENST00000282516 A0A087WUV0 522 aaPredicted RBP9.42□□□□□ -0.9
NIPBL-201ENST00000282516 ATP8B1O43520 1251 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 NBPF9Q3BBW0 867 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 ACAD11Q709F0 780 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 SYCP2Q9BX26 1530 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 POLR2MP0CAP2 368 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 ABHD8Q96I13 439 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 DCAF5Q96JK2 942 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 MLXIPQ9HAP2 919 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 SUGT1Q9Y2Z0 365 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 RPN1P04843 607 aaKnown RBP9.42□□□□□ -0.9
NIPBL-201ENST00000282516 MAPK4P31152 587 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 SOX5P35711 763 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 PABPC4Q13310 644 aaKnown RBP eCLIP9.42□□□□□ -0.93e-6■■■□□ 17.5
NIPBL-201ENST00000282516 TNNI3KQ59H18 835 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 PSTPIP2Q9H939 334 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 DONSONQ9NYP3 566 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 PCDHB15Q9Y5E8 787 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 CSADQ9Y600 493 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 FPGT-TNNI3KV9GXZ4 949 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 TESPA1A2RU30 521 aaPredicted RBP9.42□□□□□ -0.9
NIPBL-201ENST00000282516 LRRIQ4A6NIV6 560 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 KDM1AO60341 852 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 OR52Z1P0C646 297 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 IGBP1P78318 339 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 MRPS15P82914 257 aaKnown RBP9.42□□□□□ -0.9
NIPBL-201ENST00000282516 DARS2Q6PI48 645 aaKnown RBP9.42□□□□□ -0.9
NIPBL-201ENST00000282516 EXOC8Q8IYI6 725 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 KIAA2013Q8IYS2 634 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.42□□□□□ -0.9
NIPBL-201ENST00000282516 GDAP1Q8TB36 358 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 DYDC2Q96IM9 177 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 FIS1Q9Y3D6 152 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 BLVRAP53004 296 aa9.42□□□□□ -0.9
NIPBL-201ENST00000282516 TAB3Q8N5C8 712 aaPredicted RBP9.42□□□□□ -0.9
NIPBL-201ENST00000282516 YTHDC2Q9H6S0 1430 aaKnown RBP9.42□□□□□ -0.9
NIPBL-201ENST00000282516 MAGOHBQ96A72 148 aaKnown RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms