RNA–Protein interactions for RNA: ENST00000266679.8

CPSF6-201, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 1 (best) BASIC

Gene CPSF6, Length 2,229 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-201ENST00000266679 SHROOM1Q2M3G4 852 aaPredicted RBP14.39□□□□□ -0.11
CPSF6-201ENST00000266679 GPR161Q8N6U8 529 aaKnown RBP14.39□□□□□ -0.11
CPSF6-201ENST00000266679 RBM46Q8TBY0 533 aaKnown RBP14.39□□□□□ -0.11
CPSF6-201ENST00000266679 RAB34Q9BZG1 259 aa14.39□□□□□ -0.11
CPSF6-201ENST00000266679 KCNQ5Q9NR82 932 aa14.39□□□□□ -0.11
CPSF6-201ENST00000266679 ST7Q9NRC1 585 aa14.39□□□□□ -0.11
CPSF6-201ENST00000266679 TRIM10Q9UDY6 481 aa14.39□□□□□ -0.11
CPSF6-201ENST00000266679 CDC23Q9UJX2 597 aa14.39□□□□□ -0.11
CPSF6-201ENST00000266679 PCDHAC2Q9Y5I4 1007 aa14.39□□□□□ -0.11
CPSF6-201ENST00000266679 EPN1Q9Y6I3 576 aaPredicted RBP14.39□□□□□ -0.11
CPSF6-201ENST00000266679 PNMA6AP0CW24 399 aaPredicted RBP14.38□□□□□ -0.11
CPSF6-201ENST00000266679 PPP1R2P41236 205 aa14.38□□□□□ -0.11
CPSF6-201ENST00000266679 TBC1D8BQ0IIM8 1120 aa14.38□□□□□ -0.11
CPSF6-201ENST00000266679 TCP10Q12799 353 aa14.38□□□□□ -0.11
CPSF6-201ENST00000266679 TSR1Q2NL82 804 aaKnown RBP14.38□□□□□ -0.11
CPSF6-201ENST00000266679 KRT79Q5XKE5 535 aa14.38□□□□□ -0.11
CPSF6-201ENST00000266679 HHIPL2Q6UWX4 724 aa14.38□□□□□ -0.11
CPSF6-201ENST00000266679 UNC13DQ70J99 1090 aa14.38□□□□□ -0.11
CPSF6-201ENST00000266679 RAD54LQ92698 747 aa14.38□□□□□ -0.11
CPSF6-201ENST00000266679 UIMC1Q96RL1 719 aa14.38□□□□□ -0.11
CPSF6-201ENST00000266679 NAPGQ99747 312 aaPredicted RBP14.38□□□□□ -0.11
CPSF6-201ENST00000266679 NOC4LQ9BVI4 516 aaKnown RBP14.38□□□□□ -0.11
CPSF6-201ENST00000266679 DDX25Q9UHL0 483 aaKnown RBP14.38□□□□□ -0.11
CPSF6-201ENST00000266679 RASSF10A6NK89 507 aa14.38□□□□□ -0.11
CPSF6-201ENST00000266679 NKRFO15226 690 aaKnown RBP eCLIP14.38□□□□□ -0.116e-9■□□□□ 11.2
CPSF6-201ENST00000266679 ZRANB2O95218 330 aaKnown RBP eCLIP14.38□□□□□ -0.11
CPSF6-201ENST00000266679 TFRCP02786 760 aaKnown RBP14.38□□□□□ -0.11
CPSF6-201ENST00000266679 IDEP14735 1019 aa14.38□□□□□ -0.11
CPSF6-201ENST00000266679 TRIM21P19474 475 aaKnown RBP14.38□□□□□ -0.11
CPSF6-201ENST00000266679 CLK2P49760 499 aaKnown RBP14.38□□□□□ -0.11
CPSF6-201ENST00000266679 CHMP4BP1P59074 171 aa14.38□□□□□ -0.11
CPSF6-201ENST00000266679 GPATCH4Q5T3I0 446 aaKnown RBP14.38□□□□□ -0.11
CPSF6-201ENST00000266679 WDR59Q6PJI9 974 aa14.38□□□□□ -0.11
CPSF6-201ENST00000266679 KCNK18Q7Z418 384 aa14.38□□□□□ -0.11
CPSF6-201ENST00000266679 SRGAP1Q7Z6B7 1085 aa14.38□□□□□ -0.11
CPSF6-201ENST00000266679 RABGGTAQ92696 567 aa14.38□□□□□ -0.11
CPSF6-201ENST00000266679 GTPBP4Q9BZE4 634 aaKnown RBP14.38□□□□□ -0.11
CPSF6-201ENST00000266679 TMX4Q9H1E5 349 aaPredicted RBP14.38□□□□□ -0.11
CPSF6-201ENST00000266679 DNAJC18Q9H819 358 aa14.38□□□□□ -0.11
CPSF6-201ENST00000266679 AGPAT5Q9NUQ2 364 aa14.38□□□□□ -0.11
CPSF6-201ENST00000266679 ZNF541Q9H0D2 1346 aa14.38□□□□□ -0.11
CPSF6-201ENST00000266679 ZBTB5O15062 677 aa14.37□□□□□ -0.11
CPSF6-201ENST00000266679 MARCH6O60337 910 aa14.37□□□□□ -0.11
CPSF6-201ENST00000266679 ALDH1B1P30837 517 aa14.37□□□□□ -0.11
CPSF6-201ENST00000266679 HERVK_113P62684 666 aa14.37□□□□□ -0.11
CPSF6-201ENST00000266679 TMEM119Q4V9L6 283 aa14.37□□□□□ -0.11
CPSF6-201ENST00000266679 MIIPQ5JXC2 388 aa14.37□□□□□ -0.11
CPSF6-201ENST00000266679 KIAA0825Q8IV33 1275 aa14.37□□□□□ -0.11
CPSF6-201ENST00000266679 TTYH3Q9C0H2 523 aa14.37□□□□□ -0.11
CPSF6-201ENST00000266679 GUCA1BQ9UMX6 200 aa14.37□□□□□ -0.11
CPSF6-201ENST00000266679 TFR2Q9UP52 801 aa14.37□□□□□ -0.11
CPSF6-201ENST00000266679 SCN9AQ15858 1988 aa14.37□□□□□ -0.11
CPSF6-201ENST00000266679 POTEIP0CG38 1075 aa14.37□□□□□ -0.11
CPSF6-201ENST00000266679 POTEJP0CG39 1038 aa14.37□□□□□ -0.11
CPSF6-201ENST00000266679 ECM1Q16610 540 aa14.37□□□□□ -0.11
CPSF6-201ENST00000266679 COBLL1Q53SF7 1204 aa14.37□□□□□ -0.11
CPSF6-201ENST00000266679 UTP14CQ5TAP6 766 aaKnown RBP14.37□□□□□ -0.11
CPSF6-201ENST00000266679 CEP112Q8N8E3 955 aa14.37□□□□□ -0.11
CPSF6-201ENST00000266679 PARD6BQ9BYG5 372 aa14.37□□□□□ -0.11
CPSF6-201ENST00000266679 ZNF646O15015 1829 aaPredicted RBP14.36□□□□□ -0.11
CPSF6-201ENST00000266679 RBM5P52756 815 aaKnown RBP eCLIP14.36□□□□□ -0.11
CPSF6-201ENST00000266679 MRPL12P52815 198 aaKnown RBP14.36□□□□□ -0.11
CPSF6-201ENST00000266679 GABPB1Q06547 395 aaPredicted RBP14.36□□□□□ -0.11
CPSF6-201ENST00000266679 PDIA5Q14554 519 aa14.36□□□□□ -0.11
CPSF6-201ENST00000266679 PPP4R3AQ6IN85 833 aa14.36□□□□□ -0.11
CPSF6-201ENST00000266679 CENPPQ6IPU0 288 aa14.36□□□□□ -0.11
CPSF6-201ENST00000266679 CC2D1AQ6P1N0 951 aaPredicted RBP14.36□□□□□ -0.11
CPSF6-201ENST00000266679 HAS1Q92839 578 aa14.36□□□□□ -0.11
CPSF6-201ENST00000266679 NUP58Q9BVL2 599 aa14.36□□□□□ -0.11
CPSF6-201ENST00000266679 PSTPIP2Q9H939 334 aa14.36□□□□□ -0.11
CPSF6-201ENST00000266679 PVALEFA0A1B0GWK0 134 aa14.35□□□□□ -0.11
CPSF6-201ENST00000266679 EEF2P13639 858 aaKnown RBP14.35□□□□□ -0.11
CPSF6-201ENST00000266679 QRICH1Q2TAL8 776 aa14.35□□□□□ -0.11
CPSF6-201ENST00000266679 FKBP15Q5T1M5 1219 aa14.35□□□□□ -0.11
CPSF6-201ENST00000266679 DPY19L2Q6NUT2 758 aa14.35□□□□□ -0.11
CPSF6-201ENST00000266679 ZSCAN29Q8IWY8 852 aaPredicted RBP14.35□□□□□ -0.11
CPSF6-201ENST00000266679 GLIS3Q8NEA6 775 aa14.35□□□□□ -0.11
CPSF6-201ENST00000266679 DDX12PQ92771 950 aa14.35□□□□□ -0.11
CPSF6-201ENST00000266679 MTMR8Q96EF0 704 aa14.35□□□□□ -0.11
CPSF6-201ENST00000266679 EHD4Q9H223 541 aa14.35□□□□□ -0.11
CPSF6-201ENST00000266679 ZNHIT6Q9NWK9 470 aaKnown RBP14.35□□□□□ -0.11
CPSF6-201ENST00000266679 MYO1AQ9UBC5 1043 aa14.35□□□□□ -0.11
CPSF6-201ENST00000266679 DDTLA6NHG4 134 aaPredicted RBP14.35□□□□□ -0.11
CPSF6-201ENST00000266679 PLA2G4AP47712 749 aa14.35□□□□□ -0.11
CPSF6-201ENST00000266679 ZBED6P86452 979 aa14.35□□□□□ -0.11
CPSF6-201ENST00000266679 LRRC41Q15345 812 aa14.35□□□□□ -0.11
CPSF6-201ENST00000266679 MEA1Q16626 185 aa14.35□□□□□ -0.11
CPSF6-201ENST00000266679 KIAA1328Q86T90 577 aa14.35□□□□□ -0.11
CPSF6-201ENST00000266679 ZDHHC15Q96MV8 337 aa14.35□□□□□ -0.11
CPSF6-201ENST00000266679 USP17L15C9J2P7 530 aa14.34□□□□□ -0.11
CPSF6-201ENST00000266679 USP17L13C9JLJ4 530 aa14.34□□□□□ -0.11
CPSF6-201ENST00000266679 USP17L11C9JVI0 530 aa14.34□□□□□ -0.11
CPSF6-201ENST00000266679 USP17L18D6R9N7 530 aa14.34□□□□□ -0.11
CPSF6-201ENST00000266679 USP17L22D6RA61 530 aa14.34□□□□□ -0.11
CPSF6-201ENST00000266679 USP17L17D6RBQ6 530 aa14.34□□□□□ -0.11
CPSF6-201ENST00000266679 USP17L19D6RCP7 530 aa14.34□□□□□ -0.11
CPSF6-201ENST00000266679 USP17L20D6RJB6 530 aa14.34□□□□□ -0.11
CPSF6-201ENST00000266679 SSBP05455 408 aaKnown RBP eCLIP14.34□□□□□ -0.11
CPSF6-201ENST00000266679 APLP1P51693 650 aa14.34□□□□□ -0.11
CPSF6-201ENST00000266679 USP17L24Q0WX57 530 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 112.7 ms