RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 MKRN1Q9UHC7 482 aaKnown RBP12.87□□□□□ -0.35
VPS4A-201ENST00000254950 LUC7L2Q9Y383 392 aaKnown RBP12.87□□□□□ -0.35
VPS4A-201ENST00000254950 MYH3P11055 1940 aa12.87□□□□□ -0.35
VPS4A-201ENST00000254950 MEIS1O00470 390 aa12.87□□□□□ -0.35
VPS4A-201ENST00000254950 AKR1B10O60218 316 aa12.87□□□□□ -0.35
VPS4A-201ENST00000254950 COPB2P35606 906 aa12.87□□□□□ -0.35
VPS4A-201ENST00000254950 MTMR1Q13613 665 aa12.87□□□□□ -0.35
VPS4A-201ENST00000254950 CEP55Q53EZ4 464 aa12.87□□□□□ -0.35
VPS4A-201ENST00000254950 AXDND1Q5T1B0 1012 aaPredicted RBP12.87□□□□□ -0.35
VPS4A-201ENST00000254950 ZNF658Q5TYW1 1059 aaPredicted RBP12.87□□□□□ -0.35
VPS4A-201ENST00000254950 CNGA4Q8IV77 575 aa12.87□□□□□ -0.35
VPS4A-201ENST00000254950 IGSF22Q8N9C0 903 aa12.87□□□□□ -0.35
VPS4A-201ENST00000254950 C7orf43Q8WVR3 580 aa12.87□□□□□ -0.35
VPS4A-201ENST00000254950 TBC1D12O60347 775 aa12.87□□□□□ -0.35
VPS4A-201ENST00000254950 USO1O60763 962 aaKnown RBP12.87□□□□□ -0.35
VPS4A-201ENST00000254950 DCAF17Q5H9S7 520 aaPredicted RBP12.87□□□□□ -0.35
VPS4A-201ENST00000254950 RASGRP2Q7LDG7 609 aa12.87□□□□□ -0.35
VPS4A-201ENST00000254950 ATG4CQ96DT6 458 aa12.87□□□□□ -0.35
VPS4A-201ENST00000254950 KIAA1683Q9H0B3 1180 aa12.87□□□□□ -0.35
VPS4A-201ENST00000254950 PP2D1A8MPX8 630 aa12.86□□□□□ -0.35
VPS4A-201ENST00000254950 KIF5CO60282 957 aa12.86□□□□□ -0.35
VPS4A-201ENST00000254950 SORBS3O60504 671 aa12.86□□□□□ -0.35
VPS4A-201ENST00000254950 PTPAQ15257 358 aa12.86□□□□□ -0.35
VPS4A-201ENST00000254950 ODF2Q5BJF6 829 aa12.86□□□□□ -0.35
VPS4A-201ENST00000254950 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.86□□□□□ -0.35
VPS4A-201ENST00000254950 CYTH3O43739 400 aa12.86□□□□□ -0.35
VPS4A-201ENST00000254950 CYLC1P35663 651 aaPredicted RBP12.86□□□□□ -0.35
VPS4A-201ENST00000254950 USP8P40818 1118 aa12.86□□□□□ -0.35
VPS4A-201ENST00000254950 PDIA5Q14554 519 aa12.86□□□□□ -0.35
VPS4A-201ENST00000254950 TATDN1Q6P1N9 297 aa12.86□□□□□ -0.35
VPS4A-201ENST00000254950 DHTKD1Q96HY7 919 aaPredicted RBP12.86□□□□□ -0.35
VPS4A-201ENST00000254950 TBC1D22BQ9NU19 505 aa12.86□□□□□ -0.35
VPS4A-201ENST00000254950 ABT1Q9ULW3 272 aaKnown RBP12.86□□□□□ -0.35
VPS4A-201ENST00000254950 CCDC172P0C7W6 258 aa12.86□□□□□ -0.35
VPS4A-201ENST00000254950 POTEJP0CG39 1038 aa12.86□□□□□ -0.35
VPS4A-201ENST00000254950 SLURP2P0DP57 97 aa12.86□□□□□ -0.35
VPS4A-201ENST00000254950 HOXA7P31268 230 aaPredicted RBP12.86□□□□□ -0.35
VPS4A-201ENST00000254950 STRN3Q13033 797 aa12.86□□□□□ -0.35
VPS4A-201ENST00000254950 STXBP2Q15833 593 aa12.86□□□□□ -0.35
VPS4A-201ENST00000254950 TKFCQ3LXA3 575 aa12.86□□□□□ -0.35
VPS4A-201ENST00000254950 ERO1BQ86YB8 467 aa12.86□□□□□ -0.35
VPS4A-201ENST00000254950 IMPACTQ9P2X3 320 aa12.86□□□□□ -0.35
VPS4A-201ENST00000254950 NCBP1Q09161 790 aaKnown RBP12.86□□□□□ -0.35
VPS4A-201ENST00000254950 TRIM14Q14142 442 aa12.86□□□□□ -0.35
VPS4A-201ENST00000254950 FAM160B1Q5W0V3 765 aa12.86□□□□□ -0.35
VPS4A-201ENST00000254950 SMYD4Q8IYR2 804 aaPredicted RBP12.86□□□□□ -0.35
VPS4A-201ENST00000254950 MTMR14Q8NCE2 650 aa12.86□□□□□ -0.35
VPS4A-201ENST00000254950 NRBP2Q9NSY0 501 aa12.86□□□□□ -0.35
VPS4A-201ENST00000254950 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.86□□□□□ -0.35
VPS4A-201ENST00000254950 AKR1B15C9JRZ8 316 aaPredicted RBP12.85□□□□□ -0.35
VPS4A-201ENST00000254950 IPO5O00410 1097 aaKnown RBP12.85□□□□□ -0.35
VPS4A-201ENST00000254950 GAP43P17677 238 aa12.85□□□□□ -0.35
VPS4A-201ENST00000254950 IBSPP21815 317 aaPredicted RBP12.85□□□□□ -0.35
VPS4A-201ENST00000254950 DNM2P50570 870 aa12.85□□□□□ -0.35
VPS4A-201ENST00000254950 PRELPP51888 382 aa12.85□□□□□ -0.35
VPS4A-201ENST00000254950 SNAPC2Q13487 334 aa12.85□□□□□ -0.35
VPS4A-201ENST00000254950 ZFYVE27Q5T4F4 411 aa12.85□□□□□ -0.35
VPS4A-201ENST00000254950 KIF18AQ8NI77 898 aa12.85□□□□□ -0.35
VPS4A-201ENST00000254950 ENOX1Q8TC92 643 aaKnown RBP12.85□□□□□ -0.35
VPS4A-201ENST00000254950 VTI1AQ96AJ9 217 aa12.85□□□□□ -0.35
VPS4A-201ENST00000254950 MRFAP1L1Q96HT8 127 aa12.85□□□□□ -0.35
VPS4A-201ENST00000254950 AGBL1Q96MI9 1066 aa12.85□□□□□ -0.35
VPS4A-201ENST00000254950 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.85□□□□□ -0.35
VPS4A-201ENST00000254950 ZSWIM4Q9H7M6 989 aa12.85□□□□□ -0.35
VPS4A-201ENST00000254950 A0A0U1RQG5 324 aaPredicted RBP12.85□□□□□ -0.35
VPS4A-201ENST00000254950 ICAM1P05362 532 aa12.85□□□□□ -0.35
VPS4A-201ENST00000254950 TOB1P50616 345 aaPredicted RBP12.85□□□□□ -0.35
VPS4A-201ENST00000254950 BAATQ14032 418 aaPredicted RBP12.85□□□□□ -0.35
VPS4A-201ENST00000254950 FAM102BQ5T8I3 360 aa12.85□□□□□ -0.35
VPS4A-201ENST00000254950 MB21D1Q8N884 522 aa12.85□□□□□ -0.35
VPS4A-201ENST00000254950 C16orf45Q96MC5 204 aaPredicted RBP12.85□□□□□ -0.35
VPS4A-201ENST00000254950 TMEM60Q9H2L4 133 aa12.85□□□□□ -0.35
VPS4A-201ENST00000254950 BHMT2Q9H2M3 363 aa12.85□□□□□ -0.35
VPS4A-201ENST00000254950 KCNJ18B7U540 433 aa12.85□□□□□ -0.35
VPS4A-201ENST00000254950 TBX3O15119 743 aa12.85□□□□□ -0.35
VPS4A-201ENST00000254950 EXOC3O60645 756 aa12.85□□□□□ -0.35
VPS4A-201ENST00000254950 PHACTR2O75167 634 aa12.85□□□□□ -0.35
VPS4A-201ENST00000254950 KCNJ12Q14500 433 aa12.85□□□□□ -0.35
VPS4A-201ENST00000254950 ODR4Q5SWX8 454 aa12.85□□□□□ -0.35
VPS4A-201ENST00000254950 MIS18BP1Q6P0N0 1132 aa12.85□□□□□ -0.35
VPS4A-201ENST00000254950 EEPD1Q7L9B9 569 aa12.85□□□□□ -0.35
VPS4A-201ENST00000254950 ANKRD36CQ5JPF3 1778 aa12.84□□□□□ -0.35
VPS4A-201ENST00000254950 GNA14O95837 355 aa12.84□□□□□ -0.35
VPS4A-201ENST00000254950 TNNT1P13805 278 aa12.84□□□□□ -0.35
VPS4A-201ENST00000254950 VEGFAP15692 232 aaPredicted RBP12.84□□□□□ -0.35
VPS4A-201ENST00000254950 CTTNQ14247 550 aaKnown RBP12.84□□□□□ -0.35
VPS4A-201ENST00000254950 KMT5BQ4FZB7 885 aa12.84□□□□□ -0.35
VPS4A-201ENST00000254950 USP49Q70CQ1 688 aa12.84□□□□□ -0.35
VPS4A-201ENST00000254950 NEK9Q8TD19 979 aa12.84□□□□□ -0.35
VPS4A-201ENST00000254950 TBC1D5Q92609 795 aa12.84□□□□□ -0.35
VPS4A-201ENST00000254950 PPP1R9AQ9ULJ8 1098 aa12.84□□□□□ -0.35
VPS4A-201ENST00000254950 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.84□□□□□ -0.35
VPS4A-201ENST00000254950 ZBTB22O15209 634 aa12.84□□□□□ -0.35
VPS4A-201ENST00000254950 VCAM1P19320 739 aa12.84□□□□□ -0.35
VPS4A-201ENST00000254950 KRT76Q01546 638 aa12.84□□□□□ -0.35
VPS4A-201ENST00000254950 PSMD2Q13200 908 aa12.84□□□□□ -0.35
VPS4A-201ENST00000254950 CUL4BQ13620 913 aa12.84□□□□□ -0.35
VPS4A-201ENST00000254950 USP50Q70EL3 339 aaPredicted RBP12.84□□□□□ -0.35
VPS4A-201ENST00000254950 PPP1R9BQ96SB3 815 aa12.84□□□□□ -0.35
VPS4A-201ENST00000254950 C10orf71Q711Q0 1435 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms