RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 PTK2Q05397 1052 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 MIGA2Q7L4E1 593 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 FAM160B2Q86V87 743 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 MYRIPQ8NFW9 859 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 GJA10Q969M2 543 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 VCX3BQ9H321 246 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 NRKQ7Z2Y5 1582 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 H7C0C1 242 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 MEIS1O00470 390 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 STX2P32856 288 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 ATP5OP48047 213 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 SUSD4Q5VX71 490 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 CIAPIN1Q6FI81 312 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 SEPT12Q8IYM1 358 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 COA7Q96BR5 231 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 PUS7LQ9H0K6 701 aaKnown RBP9.5□□□□□ -0.89
PTCD3-201ENST00000254630 ANTXR1Q9H6X2 564 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 TMEM206Q9H813 350 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 FANCLQ9NW38 375 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 PI4KBQ9UBF8 816 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 BPIFB4P59827 614 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 PPFIA1Q13136 1202 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 PPP2R5EQ16537 467 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 C4orf50Q6ZRC1 276 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 ADAT2Q7Z6V5 191 aaKnown RBP9.5□□□□□ -0.89
PTCD3-201ENST00000254630 VSIG1Q86XK7 387 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 PIGBQ92521 554 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 DPH5Q9H2P9 285 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 PRKAG2Q9UGJ0 569 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 BZW2Q9Y6E2 419 aaKnown RBP9.5□□□□□ -0.89
PTCD3-201ENST00000254630 PSDA5PKW4 1024 aaPredicted RBP9.49□□□□□ -0.89
PTCD3-201ENST00000254630 SGK1O00141 431 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 Q3C1V9 767 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 DCAF4Q8WV16 495 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 DHTKD1Q96HY7 919 aaPredicted RBP9.49□□□□□ -0.89
PTCD3-201ENST00000254630 RAB3IPQ96QF0 476 aaPredicted RBP9.49□□□□□ -0.89
PTCD3-201ENST00000254630 COA1Q9GZY4 146 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 PCIF1Q9H4Z3 704 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 PIH1D3Q9NQM4 214 aaKnown RBP9.49□□□□□ -0.89
PTCD3-201ENST00000254630 MAN1B1Q9UKM7 699 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.49□□□□□ -0.89
PTCD3-201ENST00000254630 CACNB1Q02641 598 aaPredicted RBP9.49□□□□□ -0.89
PTCD3-201ENST00000254630 RNASELQ05823 741 aaKnown RBP9.49□□□□□ -0.89
PTCD3-201ENST00000254630 ADCK5Q3MIX3 580 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 KRT71Q3SY84 523 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 NACC1Q96RE7 527 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 STK17AQ9UEE5 414 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 ABT1Q9ULW3 272 aaKnown RBP9.49□□□□□ -0.89
PTCD3-201ENST00000254630 APOA5Q6Q788 366 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 GPT2Q8TD30 523 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 FAM81BQ96LP2 452 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 PPP1R16BQ96T49 567 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 NUF2Q9BZD4 464 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 ANAPC5Q9UJX4 755 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 PASKQ96RG2 1323 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 PTCH1Q13635 1447 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 CASQ2O14958 399 aaPredicted RBP9.49□□□□□ -0.89
PTCD3-201ENST00000254630 PRPF3O43395 683 aaKnown RBP9.49□□□□□ -0.89
PTCD3-201ENST00000254630 ECE1P42892 770 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 RASSF7Q02833 373 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 CAPN12Q6ZSI9 719 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 LMNTD2Q8IXW0 634 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 SH3RF3Q8TEJ3 882 aaPredicted RBP9.49□□□□□ -0.89
PTCD3-201ENST00000254630 SLC7A3Q8WY07 619 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 P2RX5Q93086 422 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 SLC38A10Q9HBR0 1119 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 PTPN22Q9Y2R2 807 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 NOC2LQ9Y3T9 749 aaKnown RBP9.49□□□□□ -0.89
PTCD3-201ENST00000254630 PNMA6FA0A0J9YX94 578 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 IFNB1P01574 187 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 CDK8P49336 464 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 PSMD6Q15008 389 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 MUM1L1Q5H9M0 696 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 LRRC8AQ8IWT6 810 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 TAB3Q8N5C8 712 aaPredicted RBP9.49□□□□□ -0.89
PTCD3-201ENST00000254630 CDHR1Q96JP9 859 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 CEP170P1Q96L14 293 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 DDX41Q9UJV9 622 aaKnown RBP9.49□□□□□ -0.89
PTCD3-201ENST00000254630 RIPOR2Q9Y4F9 1068 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 RNF8O76064 485 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 INPP5BP32019 993 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 RPS6KA2Q15349 733 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 MTERF2Q49AM1 385 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 C10orf67Q8IYJ2 551 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 FAM186BQ8IYM0 893 aa9.49□□□□□ -0.89
PTCD3-201ENST00000254630 NSUN7Q8NE18 718 aaKnown RBP9.49□□□□□ -0.89
PTCD3-201ENST00000254630 ERBB3P21860 1342 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 NR2F2P24468 414 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 ANXA13P27216 316 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 COL15A1P39059 1388 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 KRT3P12035 628 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 SAT1P21673 171 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 SH3GLB2Q9NR46 395 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 TNS3Q68CZ2 1445 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 A0A1W2PQ27 194 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 A0A1W2PQ64 194 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 A0A1W2PQD8 194 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 ZNF233A6NK53 670 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 CLIC2O15247 247 aa9.48□□□□□ -0.89
PTCD3-201ENST00000254630 RBL2Q08999 1139 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms