RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 NECAB2Q7Z6G3 386 aa11.36□□□□□ -0.59
CLN3-261ENST00000637686 FBXO16Q8IX29 292 aaPredicted RBP11.36□□□□□ -0.59
CLN3-261ENST00000637686 SAMD3Q8N6K7 520 aa11.36□□□□□ -0.59
CLN3-261ENST00000637686 ANKLE1Q8NAG6 615 aa11.36□□□□□ -0.59
CLN3-261ENST00000637686 NSUN6Q8TEA1 469 aaKnown RBP11.36□□□□□ -0.59
CLN3-261ENST00000637686 GPKOWQ92917 476 aaPredicted RBP eCLIP11.36□□□□□ -0.59
CLN3-261ENST00000637686 RMDN3Q96TC7 470 aa11.36□□□□□ -0.59
CLN3-261ENST00000637686 NCOA5Q9HCD5 579 aaKnown RBP11.36□□□□□ -0.59
CLN3-261ENST00000637686 XPNPEP3Q9NQH7 507 aa11.36□□□□□ -0.59
CLN3-261ENST00000637686 PDGFCQ9NRA1 345 aa11.36□□□□□ -0.59
CLN3-261ENST00000637686 MAP3K20Q9NYL2 800 aaKnown RBP11.36□□□□□ -0.59
CLN3-261ENST00000637686 FRMPD3Q5JV73 1810 aa11.36□□□□□ -0.59
CLN3-261ENST00000637686 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.35□□□□□ -0.59
CLN3-261ENST00000637686 B4DLN1 442 aa11.35□□□□□ -0.59
CLN3-261ENST00000637686 ADCY6O43306 1168 aa11.35□□□□□ -0.59
CLN3-261ENST00000637686 PFKFB2O60825 505 aa11.35□□□□□ -0.59
CLN3-261ENST00000637686 PGK1P00558 417 aa11.35□□□□□ -0.59
CLN3-261ENST00000637686 PDIA4P13667 645 aaKnown RBP11.35□□□□□ -0.59
CLN3-261ENST00000637686 EIF2AK2P19525 551 aaKnown RBP11.35□□□□□ -0.59
CLN3-261ENST00000637686 EDNRBP24530 442 aa11.35□□□□□ -0.59
CLN3-261ENST00000637686 ADCYAP1R1P41586 468 aa11.35□□□□□ -0.59
CLN3-261ENST00000637686 MRPL12P52815 198 aaKnown RBP11.35□□□□□ -0.59
CLN3-261ENST00000637686 TNFAIP2Q03169 654 aa11.35□□□□□ -0.59
CLN3-261ENST00000637686 PDE4DQ08499 809 aa11.35□□□□□ -0.59
CLN3-261ENST00000637686 STK3Q13188 491 aa11.35□□□□□ -0.59
CLN3-261ENST00000637686 WWC2Q6AWC2 1192 aa11.35□□□□□ -0.59
CLN3-261ENST00000637686 NOL8Q76FK4 1167 aaKnown RBP11.35□□□□□ -0.59
CLN3-261ENST00000637686 FCHSD1Q86WN1 690 aa11.35□□□□□ -0.59
CLN3-261ENST00000637686 MPHOSPH6Q99547 160 aaKnown RBP11.35□□□□□ -0.59
CLN3-261ENST00000637686 VTA1Q9NP79 307 aa11.35□□□□□ -0.59
CLN3-261ENST00000637686 PXMP2Q9NR77 195 aa11.35□□□□□ -0.59
CLN3-261ENST00000637686 TPCN1Q9ULQ1 816 aa11.35□□□□□ -0.59
CLN3-261ENST00000637686 DNM1LO00429 736 aa11.34□□□□□ -0.59
CLN3-261ENST00000637686 PPFIA3O75145 1194 aa11.34□□□□□ -0.59
CLN3-261ENST00000637686 DUSP11O75319 330 aaKnown RBP11.34□□□□□ -0.59
CLN3-261ENST00000637686 SMPD1P17405 629 aa11.34□□□□□ -0.59
CLN3-261ENST00000637686 LRRC41Q15345 812 aa11.34□□□□□ -0.59
CLN3-261ENST00000637686 NTRK3Q16288 839 aa11.34□□□□□ -0.59
CLN3-261ENST00000637686 ME3Q16798 604 aa11.34□□□□□ -0.59
CLN3-261ENST00000637686 TMEM63BQ5T3F8 832 aa11.34□□□□□ -0.59
CLN3-261ENST00000637686 USP17L6PQ6QN14 398 aa11.34□□□□□ -0.59
CLN3-261ENST00000637686 ARRDC4Q8NCT1 418 aa11.34□□□□□ -0.59
CLN3-261ENST00000637686 SMARCC2Q8TAQ2 1214 aa11.34□□□□□ -0.59
CLN3-261ENST00000637686 CUL5Q93034 780 aa11.34□□□□□ -0.59
CLN3-261ENST00000637686 PHKBQ93100 1093 aa11.34□□□□□ -0.59
CLN3-261ENST00000637686 GTF3C6Q969F1 213 aa11.34□□□□□ -0.59
CLN3-261ENST00000637686 IWS1Q96ST2 819 aa11.34□□□□□ -0.59
CLN3-261ENST00000637686 LLPHQ9BRT6 129 aaKnown RBP11.34□□□□□ -0.59
CLN3-261ENST00000637686 C11orf49Q9H6J7 331 aa11.34□□□□□ -0.59
CLN3-261ENST00000637686 PSTPIP2Q9H939 334 aa11.34□□□□□ -0.59
CLN3-261ENST00000637686 LRRC37A2A6NM11 1700 aa11.34□□□□□ -0.59
CLN3-261ENST00000637686 STXBP3O00186 592 aa11.33□□□□□ -0.6
CLN3-261ENST00000637686 PIK3CDO00329 1044 aa11.33□□□□□ -0.6
CLN3-261ENST00000637686 MEIS2O14770 477 aa11.33□□□□□ -0.6
CLN3-261ENST00000637686 PRPF3O43395 683 aaKnown RBP11.33□□□□□ -0.6
CLN3-261ENST00000637686 NR3C2P08235 984 aa11.33□□□□□ -0.6
CLN3-261ENST00000637686 COL6A1P12109 1028 aa11.33□□□□□ -0.6
CLN3-261ENST00000637686 IFNAR1P17181 557 aa11.33□□□□□ -0.6
CLN3-261ENST00000637686 PTGS1P23219 599 aa11.33□□□□□ -0.6
CLN3-261ENST00000637686 NAPAP54920 295 aa11.33□□□□□ -0.6
CLN3-261ENST00000637686 IRX5P78411 483 aaPredicted RBP11.33□□□□□ -0.6
CLN3-261ENST00000637686 STXBP2Q15833 593 aa11.33□□□□□ -0.6
CLN3-261ENST00000637686 PKN1Q16512 942 aa11.33□□□□□ -0.6
CLN3-261ENST00000637686 PFKFB3Q16875 520 aaPredicted RBP11.33□□□□□ -0.6
CLN3-261ENST00000637686 IQSEC1Q6DN90 963 aa11.33□□□□□ -0.6
CLN3-261ENST00000637686 TYW1BQ6NUM6 668 aa11.33□□□□□ -0.6
CLN3-261ENST00000637686 RNF180Q86T96 592 aa11.33□□□□□ -0.6
CLN3-261ENST00000637686 PDCD2LQ9BRP1 358 aa11.33□□□□□ -0.6
CLN3-261ENST00000637686 SLC26A6Q9BXS9 759 aa11.33□□□□□ -0.6
CLN3-261ENST00000637686 WDR11Q9BZH6 1224 aa11.33□□□□□ -0.6
CLN3-261ENST00000637686 SENP6Q9GZR1 1112 aaPredicted RBP11.33□□□□□ -0.6
CLN3-261ENST00000637686 SLKQ9H2G2 1235 aaPredicted RBP11.33□□□□□ -0.6
CLN3-261ENST00000637686 GNEQ9Y223 722 aaKnown RBP11.33□□□□□ -0.6
CLN3-261ENST00000637686 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.33□□□□□ -0.6
CLN3-261ENST00000637686 SYNRGQ9UMZ2 1314 aa11.33□□□□□ -0.6
CLN3-261ENST00000637686 TNRC18O15417 2968 aaPredicted RBP11.32□□□□□ -0.6
CLN3-261ENST00000637686 RBM47A0AV96 593 aaKnown RBP11.32□□□□□ -0.6
CLN3-261ENST00000637686 MYADML2A6NDP7 307 aa11.32□□□□□ -0.6
CLN3-261ENST00000637686 KBTBD13C9JR72 458 aa11.32□□□□□ -0.6
CLN3-261ENST00000637686 DYNC1LI2O43237 492 aaPredicted RBP11.32□□□□□ -0.6
CLN3-261ENST00000637686 ADAMTS4O75173 837 aa11.32□□□□□ -0.6
CLN3-261ENST00000637686 MYCLP12524 364 aaPredicted RBP11.32□□□□□ -0.6
CLN3-261ENST00000637686 SCG2P13521 617 aa11.32□□□□□ -0.6
CLN3-261ENST00000637686 AKAP17AQ02040 695 aaKnown RBP11.32□□□□□ -0.6
CLN3-261ENST00000637686 SCRN1Q12765 414 aa11.32□□□□□ -0.6
CLN3-261ENST00000637686 PGM5Q15124 567 aa11.32□□□□□ -0.6
CLN3-261ENST00000637686 UBE2SQ16763 222 aa11.32□□□□□ -0.6
CLN3-261ENST00000637686 SEPT14Q6ZU15 432 aa11.32□□□□□ -0.6
CLN3-261ENST00000637686 TLK2Q86UE8 772 aa11.32□□□□□ -0.6
CLN3-261ENST00000637686 KLHDC9Q8NEP7 349 aa11.32□□□□□ -0.6
CLN3-261ENST00000637686 IL31RAQ8NI17 732 aa11.32□□□□□ -0.6
CLN3-261ENST00000637686 DPF3Q92784 378 aa11.32□□□□□ -0.6
CLN3-261ENST00000637686 ZFP91Q96JP5 570 aaPredicted RBP11.32□□□□□ -0.6
CLN3-261ENST00000637686 HTATIP2Q9BUP3 242 aa11.32□□□□□ -0.6
CLN3-261ENST00000637686 SPC25Q9HBM1 224 aa11.32□□□□□ -0.6
CLN3-261ENST00000637686 BARHL2Q9NY43 387 aa11.32□□□□□ -0.6
CLN3-261ENST00000637686 CIZ1Q9ULV3 898 aaPredicted RBP11.32□□□□□ -0.6
CLN3-261ENST00000637686 SMCO2A6NFE2 343 aa11.31□□□□□ -0.6
CLN3-261ENST00000637686 hCG_1984214I3L0E3 225 aa11.31□□□□□ -0.6
CLN3-261ENST00000637686 CPLX1O14810 134 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms