RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 hCG_1984214I3L0E3 225 aa23.86■■□□□ 1.41
CLN3-240ENST00000631023 CCT2P78371 535 aaKnown RBP23.86■■□□□ 1.41
CLN3-240ENST00000631023 AKAP17AQ02040 695 aaKnown RBP23.86■■□□□ 1.41
CLN3-240ENST00000631023 GJC2Q5T442 439 aaPredicted RBP23.86■■□□□ 1.41
CLN3-240ENST00000631023 TAPT1Q6NXT6 567 aa23.86■■□□□ 1.41
CLN3-240ENST00000631023 ZNF713Q8N859 430 aaPredicted RBP23.86■■□□□ 1.41
CLN3-240ENST00000631023 SMARCC2Q8TAQ2 1214 aa23.86■■□□□ 1.41
CLN3-240ENST00000631023 PSTPIP2Q9H939 334 aa23.86■■□□□ 1.41
CLN3-240ENST00000631023 PXMP2Q9NR77 195 aa23.86■■□□□ 1.41
CLN3-240ENST00000631023 ADCYAP1R1P41586 468 aa23.85■■□□□ 1.41
CLN3-240ENST00000631023 LRRC41Q15345 812 aa23.85■■□□□ 1.41
CLN3-240ENST00000631023 STXBP2Q15833 593 aa23.85■■□□□ 1.41
CLN3-240ENST00000631023 FCHSD1Q86WN1 690 aa23.85■■□□□ 1.41
CLN3-240ENST00000631023 LARP6Q9BRS8 491 aaKnown RBP23.85■■□□□ 1.41
CLN3-240ENST00000631023 UPF2Q9HAU5 1272 aaKnown RBP23.85■■□□□ 1.41
CLN3-240ENST00000631023 PDGFCQ9NRA1 345 aa23.85■■□□□ 1.41
CLN3-240ENST00000631023 PIK3CDO00329 1044 aa23.84■■□□□ 1.41
CLN3-240ENST00000631023 PGK1P00558 417 aa23.84■■□□□ 1.41
CLN3-240ENST00000631023 EIF2AK2P19525 551 aaKnown RBP23.84■■□□□ 1.41
CLN3-240ENST00000631023 NEK4P51957 841 aa23.84■■□□□ 1.41
CLN3-240ENST00000631023 GPKOWQ92917 476 aaPredicted RBP eCLIP23.84■■□□□ 1.41
CLN3-240ENST00000631023 MYH7BA7E2Y1 1941 aa23.84■■□□□ 1.41
CLN3-240ENST00000631023 CPLX1O14810 134 aa23.83■■□□□ 1.41
CLN3-240ENST00000631023 PRPF3O43395 683 aaKnown RBP23.83■■□□□ 1.41
CLN3-240ENST00000631023 NR3C2P08235 984 aa23.83■■□□□ 1.41
CLN3-240ENST00000631023 IFNAR1P17181 557 aa23.83■■□□□ 1.41
CLN3-240ENST00000631023 PPP1R18Q6NYC8 613 aa23.83■■□□□ 1.41
CLN3-240ENST00000631023 CPLX2Q6PUV4 134 aaKnown RBP23.83■■□□□ 1.41
CLN3-240ENST00000631023 LENG1Q96BZ8 264 aaPredicted RBP23.83■■□□□ 1.41
CLN3-240ENST00000631023 C22orf23Q9BZE7 217 aa23.83■■□□□ 1.41
CLN3-240ENST00000631023 NCOA5Q9HCD5 579 aaKnown RBP23.83■■□□□ 1.41
CLN3-240ENST00000631023 SYNRGQ9UMZ2 1314 aa23.83■■□□□ 1.41
CLN3-240ENST00000631023 COL6A1P12109 1028 aa23.82■■□□□ 1.4
CLN3-240ENST00000631023 NAPAP54920 295 aa23.82■■□□□ 1.4
CLN3-240ENST00000631023 NTRK3Q16288 839 aa23.82■■□□□ 1.4
CLN3-240ENST00000631023 PFKFB3Q16875 520 aaPredicted RBP23.82■■□□□ 1.4
CLN3-240ENST00000631023 WWC2Q6AWC2 1192 aa23.82■■□□□ 1.4
CLN3-240ENST00000631023 USP17L6PQ6QN14 398 aa23.82■■□□□ 1.4
CLN3-240ENST00000631023 TEX2Q8IWB9 1127 aa23.82■■□□□ 1.4
CLN3-240ENST00000631023 SCFD2Q8WU76 684 aa23.82■■□□□ 1.4
CLN3-240ENST00000631023 DPF3Q92784 378 aa23.82■■□□□ 1.4
CLN3-240ENST00000631023 WDR11Q9BZH6 1224 aa23.82■■□□□ 1.4
CLN3-240ENST00000631023 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.82■■□□□ 1.4
CLN3-240ENST00000631023 RBM47A0AV96 593 aaKnown RBP23.82■■□□□ 1.4
CLN3-240ENST00000631023 ADCY6O43306 1168 aa23.82■■□□□ 1.4
CLN3-240ENST00000631023 EIF3JO75822 258 aaKnown RBP23.82■■□□□ 1.4
CLN3-240ENST00000631023 SCG2P13521 617 aa23.82■■□□□ 1.4
CLN3-240ENST00000631023 AK2P54819 239 aa23.82■■□□□ 1.4
CLN3-240ENST00000631023 STK3Q13188 491 aa23.82■■□□□ 1.4
CLN3-240ENST00000631023 TRIM22Q8IYM9 498 aa23.82■■□□□ 1.4
CLN3-240ENST00000631023 PDCD2LQ9BRP1 358 aa23.82■■□□□ 1.4
CLN3-240ENST00000631023 TSEN34Q9BSV6 310 aaKnown RBP23.82■■□□□ 1.4
CLN3-240ENST00000631023 RNF26Q9BY78 433 aaPredicted RBP23.82■■□□□ 1.4
CLN3-240ENST00000631023 SENP6Q9GZR1 1112 aaPredicted RBP23.82■■□□□ 1.4
CLN3-240ENST00000631023 AP5M1Q9H0R1 490 aa23.82■■□□□ 1.4
CLN3-240ENST00000631023 GLT8D2Q9H1C3 349 aa23.82■■□□□ 1.4
CLN3-240ENST00000631023 SLKQ9H2G2 1235 aaPredicted RBP23.82■■□□□ 1.4
CLN3-240ENST00000631023 BARHL2Q9NY43 387 aa23.82■■□□□ 1.4
CLN3-240ENST00000631023 GNEQ9Y223 722 aaKnown RBP23.82■■□□□ 1.4
CLN3-240ENST00000631023 Q9Y3F1 56 aa23.82■■□□□ 1.4
CLN3-240ENST00000631023 CEP290O15078 2479 aa23.81■■□□□ 1.4
CLN3-240ENST00000631023 ALPK3Q96L96 1907 aa23.81■■□□□ 1.4
CLN3-240ENST00000631023 MEIS2O14770 477 aa23.81■■□□□ 1.4
CLN3-240ENST00000631023 ADAMTS4O75173 837 aa23.81■■□□□ 1.4
CLN3-240ENST00000631023 C6orf222P0C671 652 aaPredicted RBP23.81■■□□□ 1.4
CLN3-240ENST00000631023 SMPD1P17405 629 aa23.81■■□□□ 1.4
CLN3-240ENST00000631023 GJA9P57773 515 aa23.81■■□□□ 1.4
CLN3-240ENST00000631023 DUSP28Q4G0W2 176 aa23.81■■□□□ 1.4
CLN3-240ENST00000631023 PHKBQ93100 1093 aa23.81■■□□□ 1.4
CLN3-240ENST00000631023 SLC26A6Q9BXS9 759 aa23.81■■□□□ 1.4
CLN3-240ENST00000631023 UPF3AQ9H1J1 476 aaKnown RBP23.81■■□□□ 1.4
CLN3-240ENST00000631023 NKRFO15226 690 aaKnown RBP eCLIP23.8■■□□□ 1.4
CLN3-240ENST00000631023 MYCLP12524 364 aaPredicted RBP23.8■■□□□ 1.4
CLN3-240ENST00000631023 CCND2P30279 289 aa23.8■■□□□ 1.4
CLN3-240ENST00000631023 TTLL4Q14679 1199 aa23.8■■□□□ 1.4
CLN3-240ENST00000631023 PGM5Q15124 567 aa23.8■■□□□ 1.4
CLN3-240ENST00000631023 TLK2Q86UE8 772 aa23.8■■□□□ 1.4
CLN3-240ENST00000631023 PCSK9Q8NBP7 692 aaKnown RBP23.8■■□□□ 1.4
CLN3-240ENST00000631023 CCDC12Q8WUD4 166 aaPredicted RBP23.8■■□□□ 1.4
CLN3-240ENST00000631023 TPCN1Q9ULQ1 816 aa23.8■■□□□ 1.4
CLN3-240ENST00000631023 STXBP3O00186 592 aa23.79■■□□□ 1.4
CLN3-240ENST00000631023 CST5P28325 142 aaPredicted RBP23.79■■□□□ 1.4
CLN3-240ENST00000631023 SSRP1Q08945 709 aaKnown RBP23.79■■□□□ 1.4
CLN3-240ENST00000631023 GNASQ5JWF2 1037 aa23.79■■□□□ 1.4
CLN3-240ENST00000631023 SEPT14Q6ZU15 432 aa23.79■■□□□ 1.4
CLN3-240ENST00000631023 VSIG10LQ86VR7 867 aa23.79■■□□□ 1.4
CLN3-240ENST00000631023 KLHDC9Q8NEP7 349 aa23.79■■□□□ 1.4
CLN3-240ENST00000631023 DNAH12Q6ZR08 3092 aa23.78■■□□□ 1.4
CLN3-240ENST00000631023 SPDYE3A6NKU9 549 aa23.78■■□□□ 1.4
CLN3-240ENST00000631023 DYNC1LI2O43237 492 aaPredicted RBP23.78■■□□□ 1.4
CLN3-240ENST00000631023 RBM25P49756 843 aaKnown RBP23.78■■□□□ 1.4
CLN3-240ENST00000631023 ADCY7P51828 1080 aa23.78■■□□□ 1.4
CLN3-240ENST00000631023 RIC8AQ9NPQ8 531 aa23.78■■□□□ 1.4
CLN3-240ENST00000631023 PHF24Q9UPV7 400 aa23.78■■□□□ 1.4
CLN3-240ENST00000631023 SMCO2A6NFE2 343 aa23.78■■□□□ 1.4
CLN3-240ENST00000631023 PFKFB2O60825 505 aa23.78■■□□□ 1.4
CLN3-240ENST00000631023 CDKL5O76039 1030 aa23.78■■□□□ 1.4
CLN3-240ENST00000631023 TXNP10599 105 aaKnown RBP23.78■■□□□ 1.4
CLN3-240ENST00000631023 NKX3-2P78367 333 aa23.78■■□□□ 1.4
CLN3-240ENST00000631023 MOXD2PA6NHM9 499 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms