RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 LOXL4Q96JB6 756 aa5.2□□□□□ -1.58
SCN1A-208ENST00000625916 METTL5Q9NRN9 209 aaKnown RBP5.2□□□□□ -1.58
SCN1A-208ENST00000625916 GINM1Q9NU53 330 aa5.2□□□□□ -1.58
SCN1A-208ENST00000625916 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.2□□□□□ -1.58
SCN1A-208ENST00000625916 SIT1Q9Y3P8 196 aa5.2□□□□□ -1.58
SCN1A-208ENST00000625916 C7orf72A4D263 438 aa5.19□□□□□ -1.58
SCN1A-208ENST00000625916 ZNF16P17020 682 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-208ENST00000625916 GRB10Q13322 594 aa5.19□□□□□ -1.58
SCN1A-208ENST00000625916 COL9A2Q14055 689 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-208ENST00000625916 RGL3Q3MIN7 710 aa5.19□□□□□ -1.58
SCN1A-208ENST00000625916 DCP2Q8IU60 420 aaKnown RBP5.19□□□□□ -1.58
SCN1A-208ENST00000625916 LINC00482Q8N8I6 264 aa5.19□□□□□ -1.58
SCN1A-208ENST00000625916 GORASP1Q9BQQ3 440 aa5.19□□□□□ -1.58
SCN1A-208ENST00000625916 PCDH18Q9HCL0 1135 aa5.19□□□□□ -1.58
SCN1A-208ENST00000625916 PLATP00750 562 aa5.18□□□□□ -1.58
SCN1A-208ENST00000625916 C8BP07358 591 aa5.18□□□□□ -1.58
SCN1A-208ENST00000625916 RACK1P63244 317 aaKnown RBP5.18□□□□□ -1.58
SCN1A-208ENST00000625916 ZXDAP98168 799 aa5.18□□□□□ -1.58
SCN1A-208ENST00000625916 KIAA2012Q0VF49 1180 aa5.18□□□□□ -1.58
SCN1A-208ENST00000625916 PPP2R5EQ16537 467 aa5.18□□□□□ -1.58
SCN1A-208ENST00000625916 ETV3LQ6ZN32 361 aa5.18□□□□□ -1.58
SCN1A-208ENST00000625916 FAM124AQ86V42 546 aa5.18□□□□□ -1.58
SCN1A-208ENST00000625916 ARHGEF39Q8N4T4 335 aa5.18□□□□□ -1.58
SCN1A-208ENST00000625916 RBM15Q96T37 977 aaKnown RBP eCLIP5.18□□□□□ -1.58
SCN1A-208ENST00000625916 AP5M1Q9H0R1 490 aa5.18□□□□□ -1.58
SCN1A-208ENST00000625916 MARCH2Q9P0N8 246 aa5.18□□□□□ -1.58
SCN1A-208ENST00000625916 CLEC1BQ9P126 229 aa5.18□□□□□ -1.58
SCN1A-208ENST00000625916 DDX41Q9UJV9 622 aaKnown RBP5.18□□□□□ -1.58
SCN1A-208ENST00000625916 EFR3BQ9Y2G0 817 aa5.18□□□□□ -1.58
SCN1A-208ENST00000625916 A0A1W2PQH9 124 aa5.17□□□□□ -1.58
SCN1A-208ENST00000625916 TNFRSF1AP19438 455 aa5.17□□□□□ -1.58
SCN1A-208ENST00000625916 RPL13P26373 211 aaKnown RBP5.17□□□□□ -1.58
SCN1A-208ENST00000625916 THBS2P35442 1172 aa5.17□□□□□ -1.58
SCN1A-208ENST00000625916 PAK2Q13177 524 aa5.17□□□□□ -1.58
SCN1A-208ENST00000625916 CPZQ66K79 652 aa5.17□□□□□ -1.58
SCN1A-208ENST00000625916 BORAQ6PGQ7 559 aa5.17□□□□□ -1.58
SCN1A-208ENST00000625916 CD300LDQ6UXZ3 194 aa5.17□□□□□ -1.58
SCN1A-208ENST00000625916 LGI4Q8N135 537 aa5.17□□□□□ -1.58
SCN1A-208ENST00000625916 C19orf47Q8N9M1 422 aaKnown RBP5.17□□□□□ -1.58
SCN1A-208ENST00000625916 CHST13Q8NET6 341 aa5.17□□□□□ -1.58
SCN1A-208ENST00000625916 OR6P1Q8NGX9 317 aa5.17□□□□□ -1.58
SCN1A-208ENST00000625916 RCC1LQ96I51 464 aaKnown RBP5.17□□□□□ -1.58
SCN1A-208ENST00000625916 C8orf49Q96NF6 230 aa5.17□□□□□ -1.58
SCN1A-208ENST00000625916 SAMD11Q96NU1 681 aa5.17□□□□□ -1.58
SCN1A-208ENST00000625916 C11orf84Q9BUA3 381 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-208ENST00000625916 BTG4Q9NY30 223 aa5.17□□□□□ -1.58
SCN1A-208ENST00000625916 AKT3Q9Y243 479 aa5.17□□□□□ -1.58
SCN1A-208ENST00000625916 ZNF536O15090 1300 aa5.17□□□□□ -1.58
SCN1A-208ENST00000625916 KCNH1O95259 989 aa5.16□□□□□ -1.58
SCN1A-208ENST00000625916 PLS3P13797 630 aa5.16□□□□□ -1.58
SCN1A-208ENST00000625916 TBC1D10BQ4KMP7 808 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-208ENST00000625916 MCTP2Q6DN12 878 aa5.16□□□□□ -1.58
SCN1A-208ENST00000625916 STK32CQ86UX6 486 aa5.16□□□□□ -1.58
SCN1A-208ENST00000625916 ZC3H18Q86VM9 953 aaKnown RBP5.16□□□□□ -1.58
SCN1A-208ENST00000625916 ZNF654Q8IZM8 581 aa5.16□□□□□ -1.58
SCN1A-208ENST00000625916 TTC9BQ8N6N2 239 aa5.16□□□□□ -1.58
SCN1A-208ENST00000625916 KYQ8NBH2 561 aa5.16□□□□□ -1.58
SCN1A-208ENST00000625916 KLHL6Q8WZ60 621 aa5.16□□□□□ -1.58
SCN1A-208ENST00000625916 SPATA32Q96LK8 384 aa5.16□□□□□ -1.58
SCN1A-208ENST00000625916 SYT3Q9BQG1 590 aa5.16□□□□□ -1.58
SCN1A-208ENST00000625916 GPRC5CQ9NQ84 441 aa5.16□□□□□ -1.58
SCN1A-208ENST00000625916 INVSQ9Y283 1065 aa5.16□□□□□ -1.58
SCN1A-208ENST00000625916 ANKRD34BA5PLL1 514 aa5.15□□□□□ -1.59
SCN1A-208ENST00000625916 MROH6A6NGR9 719 aa5.15□□□□□ -1.59
SCN1A-208ENST00000625916 MATN3O15232 486 aa5.15□□□□□ -1.59
SCN1A-208ENST00000625916 AKAP8O43823 692 aaKnown RBP5.15□□□□□ -1.59
SCN1A-208ENST00000625916 ZNF20P17024 532 aa5.15□□□□□ -1.59
SCN1A-208ENST00000625916 GIPRP48546 466 aa5.15□□□□□ -1.59
SCN1A-208ENST00000625916 SCRN1Q12765 414 aa5.15□□□□□ -1.59
SCN1A-208ENST00000625916 FAM26FQ5R3K3 315 aa5.15□□□□□ -1.59
SCN1A-208ENST00000625916 KIAA1211LQ6NV74 962 aa5.15□□□□□ -1.59
SCN1A-208ENST00000625916 GLB1LQ6UWU2 654 aa5.15□□□□□ -1.59
SCN1A-208ENST00000625916 TEX2Q8IWB9 1127 aa5.15□□□□□ -1.59
SCN1A-208ENST00000625916 CRACR2BQ8N4Y2 399 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-208ENST00000625916 FAM26EQ8N5C1 309 aa5.15□□□□□ -1.59
SCN1A-208ENST00000625916 TTLL6Q8N841 843 aa5.15□□□□□ -1.59
SCN1A-208ENST00000625916 PLEKHO2Q8TD55 490 aa5.15□□□□□ -1.59
SCN1A-208ENST00000625916 C22orf46C9J442 243 aa5.14□□□□□ -1.59
SCN1A-208ENST00000625916 NOP56O00567 594 aaKnown RBP5.14□□□□□ -1.59
SCN1A-208ENST00000625916 DDX3XO00571 662 aaKnown RBP eCLIP5.14□□□□□ -1.59
SCN1A-208ENST00000625916 SGSM2O43147 1006 aa5.14□□□□□ -1.59
SCN1A-208ENST00000625916 THBDP07204 575 aa5.14□□□□□ -1.59
SCN1A-208ENST00000625916 SOX9P48436 509 aa5.14□□□□□ -1.59
SCN1A-208ENST00000625916 MBLAC2Q68D91 279 aa5.14□□□□□ -1.59
SCN1A-208ENST00000625916 POMZP3Q6PJE2 187 aa5.14□□□□□ -1.59
SCN1A-208ENST00000625916 VHLLQ6RSH7 139 aa5.14□□□□□ -1.59
SCN1A-208ENST00000625916 CPLX3Q8WVH0 158 aa5.14□□□□□ -1.59
SCN1A-208ENST00000625916 SEC14L1Q92503 715 aa5.14□□□□□ -1.59
SCN1A-208ENST00000625916 DPF3Q92784 378 aa5.14□□□□□ -1.59
SCN1A-208ENST00000625916 PPP1R14AQ96A00 147 aa5.14□□□□□ -1.59
SCN1A-208ENST00000625916 MMP19Q99542 508 aa5.14□□□□□ -1.59
SCN1A-208ENST00000625916 APEX2Q9UBZ4 518 aa5.14□□□□□ -1.59
SCN1A-208ENST00000625916 SRRDQ9UH36 339 aa5.14□□□□□ -1.59
SCN1A-208ENST00000625916 C1QTNF3-AMACRE9PGA6 284 aa5.13□□□□□ -1.59
SCN1A-208ENST00000625916 FSHBP01225 129 aa5.13□□□□□ -1.59
SCN1A-208ENST00000625916 ITGA1P56199 1179 aa5.13□□□□□ -1.59
SCN1A-208ENST00000625916 C9orf131Q5VYM1 1079 aa5.13□□□□□ -1.59
SCN1A-208ENST00000625916 MILR1Q7Z6M3 343 aa5.13□□□□□ -1.59
SCN1A-208ENST00000625916 MIB1Q86YT6 1006 aa5.13□□□□□ -1.59
SCN1A-208ENST00000625916 TXNDC5Q8NBS9 432 aaKnown RBP5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms