RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 VCX3AQ9NNX9 186 aa8.7□□□□□ -1.02
VPS11-209ENST00000622309 CWC25Q9NXE8 425 aaPredicted RBP8.7□□□□□ -1.02
VPS11-209ENST00000622309 KCNH3Q9ULD8 1083 aa8.7□□□□□ -1.02
VPS11-209ENST00000622309 NFU1Q9UMS0 254 aa8.7□□□□□ -1.02
VPS11-209ENST00000622309 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.7□□□□□ -1.02
VPS11-209ENST00000622309 CARMIL3Q8ND23 1372 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 MYCLP1P12525 358 aaPredicted RBP8.69□□□□□ -1.02
VPS11-209ENST00000622309 ALADP13716 330 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 FLT3P36888 993 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 ALDH5A1P51649 535 aaPredicted RBP8.69□□□□□ -1.02
VPS11-209ENST00000622309 TMEM62Q0P6H9 643 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 SF3A3Q12874 501 aaKnown RBP eCLIP8.69□□□□□ -1.025e-6■■■■□ 19.6
VPS11-209ENST00000622309 BYSLQ13895 437 aaKnown RBP8.69□□□□□ -1.02
VPS11-209ENST00000622309 CEP128Q6ZU80 1094 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 FAM163AQ96GL9 167 aaPredicted RBP8.69□□□□□ -1.02
VPS11-209ENST00000622309 NDNQ99608 321 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 UBA5Q9GZZ9 404 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 DLGAP2Q9P1A6 1054 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 CEP126Q9P2H0 1117 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 FBXO9Q9UK97 447 aaPredicted RBP8.69□□□□□ -1.02
VPS11-209ENST00000622309 SLC12A4Q9UP95 1085 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 PLAAQ9Y263 795 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 GNAT3A8MTJ3 354 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 GBP1P32455 592 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 STAT6P42226 847 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 ZC3H6P61129 1189 aaKnown RBP8.69□□□□□ -1.02
VPS11-209ENST00000622309 CDC37Q16543 378 aaPredicted RBP8.69□□□□□ -1.02
VPS11-209ENST00000622309 SGSM1Q2NKQ1 1148 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 C10orf62Q5T681 223 aaPredicted RBP8.69□□□□□ -1.02
VPS11-209ENST00000622309 RUFY4Q6ZNE9 571 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 C14orf80Q86SX3 495 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 ELOA2Q8IYF1 753 aaPredicted RBP8.69□□□□□ -1.02
VPS11-209ENST00000622309 IL17REQ8NFR9 667 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 SLX1AQ9BQ83 275 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 SYT15Q9BQS2 421 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 ADD3Q9UEY8 706 aaKnown RBP8.69□□□□□ -1.02
VPS11-209ENST00000622309 TGFB3P10600 412 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 ZNF24P17028 368 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 FECHP22830 423 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 TUBP50607 506 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 PLCD1P51178 756 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 STX17P56962 302 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 PPP2R2AP63151 447 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 KCNJ2P63252 427 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 PPARAQ07869 468 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 TRIM14Q14142 442 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 POSTNQ15063 836 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 RNF220Q5VTB9 566 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 SFMBT2Q5VUG0 894 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 SHC4Q6S5L8 630 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 SEPT14Q6ZU15 432 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 AACSQ86V21 672 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 NEK9Q8TD19 979 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 CHMP6Q96FZ7 201 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 RPS6KC1Q96S38 1066 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 CHP1Q99653 195 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 TMBIM4Q9HC24 238 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 DMAP1Q9NPF5 467 aaPredicted RBP8.69□□□□□ -1.02
VPS11-209ENST00000622309 SAMD15Q9P1V8 674 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 HPSEQ9Y251 543 aa8.69□□□□□ -1.02
VPS11-209ENST00000622309 IGSF1Q8N6C5 1336 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 CEMIPQ8WUJ3 1361 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 MACROD2A1Z1Q3 448 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 IFIT3O14879 490 aaKnown RBP8.68□□□□□ -1.02
VPS11-209ENST00000622309 CEP104O60308 925 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 E2F6O75461 281 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 EIF4BP23588 611 aaKnown RBP8.68□□□□□ -1.02
VPS11-209ENST00000622309 ERCC5P28715 1186 aaPredicted RBP8.68□□□□□ -1.02
VPS11-209ENST00000622309 CCT6AP40227 531 aaKnown RBP8.68□□□□□ -1.02
VPS11-209ENST00000622309 RFC5P40937 340 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 CUL4BQ13620 913 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 IMMTQ16891 758 aaKnown RBP8.68□□□□□ -1.02
VPS11-209ENST00000622309 TSNAXIP1Q2TAA8 658 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 SPATA1Q5VX52 437 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 GALNT17Q6IS24 598 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 DHX32Q7L7V1 743 aaKnown RBP8.68□□□□□ -1.02
VPS11-209ENST00000622309 KLHL29Q96CT2 875 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 IFT74Q96LB3 600 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 LGR6Q9HBX8 967 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.68□□□□□ -1.02
VPS11-209ENST00000622309 RHBDL2Q9NX52 303 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 TMCO1Q9UM00 188 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 TFR2Q9UP52 801 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 MAPK8IP1Q9UQF2 711 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 ZNF510Q9Y2H8 683 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 SH3TC1Q8TE82 1336 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 NRKQ7Z2Y5 1582 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 MARF1Q9Y4F3 1742 aaKnown RBP8.68□□□□□ -1.02
VPS11-209ENST00000622309 FOXN1O15353 648 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 MAP3K13O43283 966 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 ORC4O43929 436 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 SP100P23497 879 aaPredicted RBP8.68□□□□□ -1.02
VPS11-209ENST00000622309 TNFRSF8P28908 595 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 ITIH3Q06033 890 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 DPY19L2Q6NUT2 758 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 ZCCHC8Q6NZY4 707 aaKnown RBP8.68□□□□□ -1.02
VPS11-209ENST00000622309 ZNF365Q70YC5 407 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 LONP2Q86WA8 852 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 TRAPPC9Q96Q05 1148 aa8.68□□□□□ -1.02
VPS11-209ENST00000622309 PPP1R12CQ9BZL4 782 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms