RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 NCK2O43639 380 aa21.73■■□□□ 1.07
PDLIM3-212ENST00000620787 SLC4A8Q2Y0W8 1093 aa21.73■■□□□ 1.07
PDLIM3-212ENST00000620787 CNNM4Q6P4Q7 775 aa21.73■■□□□ 1.07
PDLIM3-212ENST00000620787 FBXO33Q7Z6M2 555 aa21.73■■□□□ 1.07
PDLIM3-212ENST00000620787 NDST4Q9H3R1 872 aa21.73■■□□□ 1.07
PDLIM3-212ENST00000620787 DEF6Q9H4E7 631 aa21.73■■□□□ 1.07
PDLIM3-212ENST00000620787 RABEP2Q9H5N1 569 aa21.73■■□□□ 1.07
PDLIM3-212ENST00000620787 MINPP1Q9UNW1 487 aa21.73■■□□□ 1.07
PDLIM3-212ENST00000620787 KLRK1P26718 216 aa21.73■■□□□ 1.07
PDLIM3-212ENST00000620787 CCDC181Q5TID7 509 aa21.73■■□□□ 1.07
PDLIM3-212ENST00000620787 LRRC53A6NM62 1247 aa21.72■■□□□ 1.07
PDLIM3-212ENST00000620787 AKR1B10O60218 316 aa21.72■■□□□ 1.07
PDLIM3-212ENST00000620787 USP17L8P0C7I0 530 aa21.72■■□□□ 1.07
PDLIM3-212ENST00000620787 GNAQP50148 359 aa21.72■■□□□ 1.07
PDLIM3-212ENST00000620787 MMTAG2Q9BU76 263 aaKnown RBP21.72■■□□□ 1.07
PDLIM3-212ENST00000620787 TLR10Q9BXR5 811 aa21.72■■□□□ 1.07
PDLIM3-212ENST00000620787 SLC39A2Q9NP94 309 aa21.72■■□□□ 1.07
PDLIM3-212ENST00000620787 RBM12Q9NTZ6 932 aaKnown RBP21.72■■□□□ 1.07
PDLIM3-212ENST00000620787 SHTN1A0MZ66 631 aa21.72■■□□□ 1.07
PDLIM3-212ENST00000620787 LIG3P49916 1009 aa21.72■■□□□ 1.07
PDLIM3-212ENST00000620787 SF3B2Q13435 895 aaKnown RBP21.72■■□□□ 1.07
PDLIM3-212ENST00000620787 TTC19Q6DKK2 380 aaPredicted RBP21.72■■□□□ 1.07
PDLIM3-212ENST00000620787 SUGP1Q8IWZ8 645 aaKnown RBP21.72■■□□□ 1.07
PDLIM3-212ENST00000620787 BAP1Q92560 729 aa21.72■■□□□ 1.07
PDLIM3-212ENST00000620787 KAT2BQ92831 832 aa21.72■■□□□ 1.07
PDLIM3-212ENST00000620787 HSF2BPO75031 334 aa21.71■■□□□ 1.07
PDLIM3-212ENST00000620787 ERLIN2O94905 339 aa21.71■■□□□ 1.07
PDLIM3-212ENST00000620787 PRDX5P30044 214 aa21.71■■□□□ 1.07
PDLIM3-212ENST00000620787 MAGEA1P43355 309 aa21.71■■□□□ 1.07
PDLIM3-212ENST00000620787 MAN2A1Q16706 1144 aa21.71■■□□□ 1.07
PDLIM3-212ENST00000620787 C8orf74Q6P047 294 aa21.71■■□□□ 1.07
PDLIM3-212ENST00000620787 TMED8Q6PL24 325 aaPredicted RBP21.71■■□□□ 1.07
PDLIM3-212ENST00000620787 GPIHBP1Q8IV16 184 aa21.71■■□□□ 1.07
PDLIM3-212ENST00000620787 MCM9Q9NXL9 1143 aa21.71■■□□□ 1.07
PDLIM3-212ENST00000620787 GUCY2CP25092 1073 aa21.7■■□□□ 1.07
PDLIM3-212ENST00000620787 AMPD3Q01432 767 aa21.7■■□□□ 1.07
PDLIM3-212ENST00000620787 NNTQ13423 1086 aa21.7■■□□□ 1.07
PDLIM3-212ENST00000620787 ASTE1Q2TB18 679 aaPredicted RBP21.7■■□□□ 1.07
PDLIM3-212ENST00000620787 MMS22LQ6ZRQ5 1243 aa21.7■■□□□ 1.07
PDLIM3-212ENST00000620787 RRAGAQ7L523 313 aa21.7■■□□□ 1.07
PDLIM3-212ENST00000620787 MTMR8Q96EF0 704 aa21.7■■□□□ 1.07
PDLIM3-212ENST00000620787 ZIM3Q96PE6 472 aa21.7■■□□□ 1.07
PDLIM3-212ENST00000620787 RUFY1Q96T51 708 aa21.7■■□□□ 1.07
PDLIM3-212ENST00000620787 MMRN2Q9H8L6 949 aa21.7■■□□□ 1.07
PDLIM3-212ENST00000620787 PAFAH1B1P43034 410 aa21.7■■□□□ 1.06
PDLIM3-212ENST00000620787 KLHDC7AQ5VTJ3 777 aa21.7■■□□□ 1.06
PDLIM3-212ENST00000620787 SLAIN2Q9P270 581 aa21.7■■□□□ 1.06
PDLIM3-212ENST00000620787 WNK3Q9BYP7 1800 aa21.7■■□□□ 1.06
PDLIM3-212ENST00000620787 CCNT1O60563 726 aaKnown RBP21.69■■□□□ 1.06
PDLIM3-212ENST00000620787 LETM2Q2VYF4 491 aa21.69■■□□□ 1.06
PDLIM3-212ENST00000620787 ERFEQ4G0M1 354 aa21.69■■□□□ 1.06
PDLIM3-212ENST00000620787 CCDC155Q8N6L0 562 aa21.69■■□□□ 1.06
PDLIM3-212ENST00000620787 ANKRD13CQ8N6S4 541 aa21.69■■□□□ 1.06
PDLIM3-212ENST00000620787 ABCB11O95342 1321 aa21.69■■□□□ 1.06
PDLIM3-212ENST00000620787 TECP42680 631 aa21.69■■□□□ 1.06
PDLIM3-212ENST00000620787 SF3B3Q15393 1217 aaKnown RBP21.69■■□□□ 1.06
PDLIM3-212ENST00000620787 GLE1Q53GS7 698 aaKnown RBP21.69■■□□□ 1.06
PDLIM3-212ENST00000620787 CERS3Q8IU89 383 aa21.69■■□□□ 1.06
PDLIM3-212ENST00000620787 DYNLL2Q96FJ2 89 aa21.69■■□□□ 1.06
PDLIM3-212ENST00000620787 ZMYND12Q9H0C1 365 aa21.69■■□□□ 1.06
PDLIM3-212ENST00000620787 USP17L3A6NCW0 530 aa21.68■■□□□ 1.06
PDLIM3-212ENST00000620787 USP17L4A6NCW7 530 aa21.68■■□□□ 1.06
PDLIM3-212ENST00000620787 ATP6V1AP38606 617 aa21.68■■□□□ 1.06
PDLIM3-212ENST00000620787 C12orf60Q5U649 245 aa21.68■■□□□ 1.06
PDLIM3-212ENST00000620787 PDXDC1Q6P996 788 aa21.68■■□□□ 1.06
PDLIM3-212ENST00000620787 USP17L1Q7RTZ2 530 aa21.68■■□□□ 1.06
PDLIM3-212ENST00000620787 KRT25Q7Z3Z0 450 aa21.68■■□□□ 1.06
PDLIM3-212ENST00000620787 CCDC84Q86UT8 332 aaPredicted RBP21.68■■□□□ 1.06
PDLIM3-212ENST00000620787 PALM3A6NDB9 673 aaPredicted RBP21.68■■□□□ 1.06
PDLIM3-212ENST00000620787 SLC1A4P43007 532 aa21.68■■□□□ 1.06
PDLIM3-212ENST00000620787 GFPT1Q06210 699 aaPredicted RBP21.68■■□□□ 1.06
PDLIM3-212ENST00000620787 PDCLQ13371 301 aa21.68■■□□□ 1.06
PDLIM3-212ENST00000620787 MS4A14Q96JA4 679 aa21.68■■□□□ 1.06
PDLIM3-212ENST00000620787 YY1AP1Q9H869 796 aa21.68■■□□□ 1.06
PDLIM3-212ENST00000620787 GDF3Q9NR23 364 aa21.68■■□□□ 1.06
PDLIM3-212ENST00000620787 SAMM50Q9Y512 469 aa21.68■■□□□ 1.06
PDLIM3-212ENST00000620787 ROBO1Q9Y6N7 1651 aa21.67■■□□□ 1.06
PDLIM3-212ENST00000620787 GLI1P08151 1106 aa21.67■■□□□ 1.06
PDLIM3-212ENST00000620787 HSPA2P54652 639 aa21.67■■□□□ 1.06
PDLIM3-212ENST00000620787 ATP2B2Q01814 1243 aa21.67■■□□□ 1.06
PDLIM3-212ENST00000620787 RASSF7Q02833 373 aa21.67■■□□□ 1.06
PDLIM3-212ENST00000620787 NONOQ15233 471 aaKnown RBP eCLIP21.67■■□□□ 1.06
PDLIM3-212ENST00000620787 HGSNATQ68CP4 663 aa21.67■■□□□ 1.06
PDLIM3-212ENST00000620787 SH2D3CQ8N5H7 860 aa21.67■■□□□ 1.06
PDLIM3-212ENST00000620787 CELF1Q92879 486 aaKnown RBP21.67■■□□□ 1.06
PDLIM3-212ENST00000620787 NOX5Q96PH1 765 aa21.67■■□□□ 1.06
PDLIM3-212ENST00000620787 BLOC1S4Q9NUP1 217 aa21.67■■□□□ 1.06
PDLIM3-212ENST00000620787 MTMR7Q9Y216 660 aa21.67■■□□□ 1.06
PDLIM3-212ENST00000620787 A6NNZ2 444 aa21.67■■□□□ 1.06
PDLIM3-212ENST00000620787 BUB1O43683 1085 aa21.67■■□□□ 1.06
PDLIM3-212ENST00000620787 PDE4CQ08493 712 aa21.67■■□□□ 1.06
PDLIM3-212ENST00000620787 ITPK1Q13572 414 aa21.67■■□□□ 1.06
PDLIM3-212ENST00000620787 TUBB8Q3ZCM7 444 aa21.67■■□□□ 1.06
PDLIM3-212ENST00000620787 MYMKA6NI61 221 aa21.66■■□□□ 1.06
PDLIM3-212ENST00000620787 CARSP49589 748 aaKnown RBP21.66■■□□□ 1.06
PDLIM3-212ENST00000620787 LRRC55Q6ZSA7 311 aa21.66■■□□□ 1.06
PDLIM3-212ENST00000620787 UNC13DQ70J99 1090 aa21.66■■□□□ 1.06
PDLIM3-212ENST00000620787 IQCKQ8N0W5 287 aa21.66■■□□□ 1.06
PDLIM3-212ENST00000620787 RNF10Q8N5U6 811 aaKnown RBP21.66■■□□□ 1.06
PDLIM3-212ENST00000620787 CALML4Q96GE6 196 aa21.66■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms