RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 A0A087X0B3 334 aa16.17■□□□□ 0.18
USP39-220ENST00000613444 KINO60870 393 aaKnown RBP16.17■□□□□ 0.18
USP39-220ENST00000613444 LONP1P36776 959 aaKnown RBP16.17■□□□□ 0.18
USP39-220ENST00000613444 HAS1Q92839 578 aa16.17■□□□□ 0.18
USP39-220ENST00000613444 LENG9Q96B70 501 aa16.17■□□□□ 0.18
USP39-220ENST00000613444 TIGD1Q96MW7 591 aa16.17■□□□□ 0.18
USP39-220ENST00000613444 NAP1L4Q99733 375 aaKnown RBP16.17■□□□□ 0.18
USP39-220ENST00000613444 RNF146Q9NTX7 359 aa16.17■□□□□ 0.18
USP39-220ENST00000613444 BTBD7Q9P203 1132 aa16.17■□□□□ 0.18
USP39-220ENST00000613444 FAM86B1E9PN63 330 aa16.17■□□□□ 0.18
USP39-220ENST00000613444 PEX10O60683 326 aa16.17■□□□□ 0.18
USP39-220ENST00000613444 LETM1O95202 739 aaPredicted RBP16.17■□□□□ 0.18
USP39-220ENST00000613444 FAM86B2P0C5J1 330 aa16.17■□□□□ 0.18
USP39-220ENST00000613444 STAT3P40763 770 aa16.17■□□□□ 0.18
USP39-220ENST00000613444 CALCRLQ16602 461 aa16.17■□□□□ 0.18
USP39-220ENST00000613444 LRSAM1Q6UWE0 723 aa16.17■□□□□ 0.18
USP39-220ENST00000613444 SYTL5Q8TDW5 730 aaPredicted RBP16.17■□□□□ 0.18
USP39-220ENST00000613444 FUCA2Q9BTY2 467 aa16.17■□□□□ 0.18
USP39-220ENST00000613444 TNMDQ9H2S6 317 aa16.17■□□□□ 0.18
USP39-220ENST00000613444 FAM13BQ9NYF5 915 aa16.17■□□□□ 0.18
USP39-220ENST00000613444 RPTORQ8N122 1335 aa16.17■□□□□ 0.18
USP39-220ENST00000613444 FSD2A1L4K1 749 aa16.16■□□□□ 0.18
USP39-220ENST00000613444 HERVK_113P62684 666 aa16.16■□□□□ 0.18
USP39-220ENST00000613444 RPS6P62753 249 aaKnown RBP16.16■□□□□ 0.18
USP39-220ENST00000613444 SLC30A10Q6XR72 485 aa16.16■□□□□ 0.18
USP39-220ENST00000613444 MB21D1Q8N884 522 aa16.16■□□□□ 0.18
USP39-220ENST00000613444 KCNMB3Q9NPA1 279 aa16.16■□□□□ 0.18
USP39-220ENST00000613444 FRMPD4Q14CM0 1322 aa16.16■□□□□ 0.18
USP39-220ENST00000613444 PASKQ96RG2 1323 aa16.16■□□□□ 0.18
USP39-220ENST00000613444 CNMDO75829 334 aa16.16■□□□□ 0.18
USP39-220ENST00000613444 IRX3P78415 501 aaPredicted RBP16.16■□□□□ 0.18
USP39-220ENST00000613444 TKFCQ3LXA3 575 aa16.16■□□□□ 0.18
USP39-220ENST00000613444 LONRF3Q496Y0 759 aa16.16■□□□□ 0.18
USP39-220ENST00000613444 Q4G0T1 1027 aa16.16■□□□□ 0.18
USP39-220ENST00000613444 SPRYD7Q5W111 196 aa16.16■□□□□ 0.18
USP39-220ENST00000613444 IGSF22Q8N9C0 903 aa16.16■□□□□ 0.18
USP39-220ENST00000613444 IGLV3-22A0A075B6J6 115 aa16.15■□□□□ 0.18
USP39-220ENST00000613444 KIF3CO14782 793 aa16.15■□□□□ 0.18
USP39-220ENST00000613444 POLR2DO15514 142 aaKnown RBP16.15■□□□□ 0.18
USP39-220ENST00000613444 CDC25AP30304 524 aa16.15■□□□□ 0.18
USP39-220ENST00000613444 FXR2P51116 673 aaKnown RBP eCLIP16.15■□□□□ 0.18
USP39-220ENST00000613444 CYP2W1Q8TAV3 490 aa16.15■□□□□ 0.18
USP39-220ENST00000613444 PP2D1A8MPX8 630 aa16.14■□□□□ 0.17
USP39-220ENST00000613444 CTAGE5O15320 804 aa16.14■□□□□ 0.17
USP39-220ENST00000613444 ZBTB48P10074 688 aaPredicted RBP16.14■□□□□ 0.17
USP39-220ENST00000613444 GTF2A2P52657 109 aa16.14■□□□□ 0.17
USP39-220ENST00000613444 RNF207Q6ZRF8 634 aa16.14■□□□□ 0.17
USP39-220ENST00000613444 CKAP2LQ8IYA6 745 aa16.14■□□□□ 0.17
USP39-220ENST00000613444 ETNPPLQ8TBG4 499 aa16.14■□□□□ 0.17
USP39-220ENST00000613444 BRI3BPQ8WY22 251 aa16.14■□□□□ 0.17
USP39-220ENST00000613444 PANK2Q9BZ23 570 aa16.14■□□□□ 0.17
USP39-220ENST00000613444 ACTN4O43707 911 aaKnown RBP16.14■□□□□ 0.17
USP39-220ENST00000613444 CETPP11597 493 aa16.14■□□□□ 0.17
USP39-220ENST00000613444 TECP42680 631 aa16.14■□□□□ 0.17
USP39-220ENST00000613444 TXKP42681 527 aa16.14■□□□□ 0.17
USP39-220ENST00000613444 PABPC4Q13310 644 aaKnown RBP eCLIP16.14■□□□□ 0.171e-7■■■□□ 14.9
USP39-220ENST00000613444 PLS1Q14651 629 aa16.14■□□□□ 0.17
USP39-220ENST00000613444 KRBA2Q6ZNG9 492 aa16.14■□□□□ 0.17
USP39-220ENST00000613444 RIOX2Q8IUF8 465 aa16.14■□□□□ 0.17
USP39-220ENST00000613444 GJA10Q969M2 543 aa16.14■□□□□ 0.17
USP39-220ENST00000613444 AK8Q96MA6 479 aa16.14■□□□□ 0.17
USP39-220ENST00000613444 TXNRD2Q9NNW7 524 aa16.14■□□□□ 0.17
USP39-220ENST00000613444 RBPJLQ9UBG7 517 aa16.14■□□□□ 0.17
USP39-220ENST00000613444 HUNKP57058 714 aa16.13■□□□□ 0.17
USP39-220ENST00000613444 UBXN2AP68543 259 aa16.13■□□□□ 0.17
USP39-220ENST00000613444 MKRN3Q13064 507 aaKnown RBP16.13■□□□□ 0.17
USP39-220ENST00000613444 BAATQ14032 418 aaPredicted RBP16.13■□□□□ 0.17
USP39-220ENST00000613444 E2F4Q16254 413 aa16.13■□□□□ 0.17
USP39-220ENST00000613444 PRR16Q569H4 304 aa16.13■□□□□ 0.17
USP39-220ENST00000613444 NSMFQ6X4W1 530 aa16.13■□□□□ 0.17
USP39-220ENST00000613444 ELOA2Q8IYF1 753 aaPredicted RBP16.13■□□□□ 0.17
USP39-220ENST00000613444 PDILTQ8N807 584 aa16.13■□□□□ 0.17
USP39-220ENST00000613444 PURBQ96QR8 312 aaKnown RBP16.13■□□□□ 0.17
USP39-220ENST00000613444 TAAR1Q96RJ0 339 aa16.13■□□□□ 0.17
USP39-220ENST00000613444 CCSER1Q9C0I3 900 aa16.13■□□□□ 0.17
USP39-220ENST00000613444 MAF1Q9H063 256 aa16.13■□□□□ 0.17
USP39-220ENST00000613444 SPATC1LQ9H0A9 340 aa16.13■□□□□ 0.17
USP39-220ENST00000613444 ACAD9Q9H845 621 aa16.13■□□□□ 0.17
USP39-220ENST00000613444 GPBP1L1Q9HC44 474 aaPredicted RBP16.13■□□□□ 0.17
USP39-220ENST00000613444 A1CFQ9NQ94 594 aaKnown RBP16.13■□□□□ 0.17
USP39-220ENST00000613444 CCL15-CCL14A0A0B4J2E2 113 aa16.13■□□□□ 0.17
USP39-220ENST00000613444 BTBD19C9JJ37 291 aa16.13■□□□□ 0.17
USP39-220ENST00000613444 OSBPP22059 807 aa16.13■□□□□ 0.17
USP39-220ENST00000613444 MDM2Q00987 491 aaPredicted RBP16.13■□□□□ 0.17
USP39-220ENST00000613444 CCL15Q16663 113 aa16.13■□□□□ 0.17
USP39-220ENST00000613444 IL31RAQ8NI17 732 aa16.13■□□□□ 0.17
USP39-220ENST00000613444 SDF4Q9BRK5 362 aa16.13■□□□□ 0.17
USP39-220ENST00000613444 MMTAG2Q9BU76 263 aaKnown RBP16.13■□□□□ 0.17
USP39-220ENST00000613444 TTC12Q9H892 705 aaPredicted RBP16.13■□□□□ 0.17
USP39-220ENST00000613444 EHMT1Q9H9B1 1298 aa16.13■□□□□ 0.17
USP39-220ENST00000613444 CYP39A1Q9NYL5 469 aa16.13■□□□□ 0.17
USP39-220ENST00000613444 SLC45A1Q9Y2W3 748 aa16.13■□□□□ 0.17
USP39-220ENST00000613444 ZNFX1Q9P2E3 1918 aaKnown RBP16.12■□□□□ 0.17
USP39-220ENST00000613444 TBX3O15119 743 aa16.12■□□□□ 0.17
USP39-220ENST00000613444 PDIA5Q14554 519 aa16.12■□□□□ 0.17
USP39-220ENST00000613444 SAPCD2Q86UD0 394 aa16.12■□□□□ 0.17
USP39-220ENST00000613444 CHST13Q8NET6 341 aa16.12■□□□□ 0.17
USP39-220ENST00000613444 ERCC4Q92889 916 aaPredicted RBP16.12■□□□□ 0.17
USP39-220ENST00000613444 SERTAD1Q9UHV2 236 aa16.12■□□□□ 0.17
USP39-220ENST00000613444 MSH4O15457 936 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms