RNA–Protein interactions for RNA: ENST00000612558.4

CCDC47-207, Transcript of coiled-coil domain containing 47, humanhuman

TSL 5 BASIC

Gene CCDC47, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-207ENST00000612558 JAKMIP3Q5VZ66 844 aa10.14□□□□□ -0.79
CCDC47-207ENST00000612558 SASS6Q6UVJ0 657 aa10.14□□□□□ -0.79
CCDC47-207ENST00000612558 NEK8Q86SG6 692 aa10.14□□□□□ -0.79
CCDC47-207ENST00000612558 FBXO11Q86XK2 927 aa10.14□□□□□ -0.79
CCDC47-207ENST00000612558 SCYL3Q8IZE3 742 aa10.14□□□□□ -0.79
CCDC47-207ENST00000612558 C4orf32Q8N8J7 132 aa10.14□□□□□ -0.79
CCDC47-207ENST00000612558 LPAR1Q92633 364 aa10.14□□□□□ -0.79
CCDC47-207ENST00000612558 DCPSQ96C86 337 aaKnown RBP10.14□□□□□ -0.79
CCDC47-207ENST00000612558 GLIS2Q9BZE0 524 aaPredicted RBP10.14□□□□□ -0.79
CCDC47-207ENST00000612558 KIAA1683Q9H0B3 1180 aa10.14□□□□□ -0.79
CCDC47-207ENST00000612558 CSRNP2Q9H175 543 aa10.14□□□□□ -0.79
CCDC47-207ENST00000612558 MRVI1Q9Y6F6 885 aa10.14□□□□□ -0.79
CCDC47-207ENST00000612558 ZC3H4Q9UPT8 1303 aaKnown RBP10.13□□□□□ -0.79
CCDC47-207ENST00000612558 USP14P54578 494 aa10.13□□□□□ -0.79
CCDC47-207ENST00000612558 TYRO3Q06418 890 aa10.13□□□□□ -0.79
CCDC47-207ENST00000612558 MCTP2Q6DN12 878 aa10.13□□□□□ -0.79
CCDC47-207ENST00000612558 CCDC84Q86UT8 332 aaPredicted RBP10.13□□□□□ -0.79
CCDC47-207ENST00000612558 TEX2Q8IWB9 1127 aa10.13□□□□□ -0.79
CCDC47-207ENST00000612558 ELOA2Q8IYF1 753 aaPredicted RBP10.13□□□□□ -0.79
CCDC47-207ENST00000612558 TBCKQ8TEA7 893 aa10.13□□□□□ -0.79
CCDC47-207ENST00000612558 WRNIP1Q96S55 665 aa10.13□□□□□ -0.79
CCDC47-207ENST00000612558 WDR18Q9BV38 432 aa10.13□□□□□ -0.79
CCDC47-207ENST00000612558 AS3MTQ9HBK9 375 aa10.13□□□□□ -0.79
CCDC47-207ENST00000612558 PICK1Q9NRD5 415 aa10.13□□□□□ -0.79
CCDC47-207ENST00000612558 TMEM260Q9NX78 707 aa10.13□□□□□ -0.79
CCDC47-207ENST00000612558 VWA3AA6NCI4 1184 aa10.12□□□□□ -0.79
CCDC47-207ENST00000612558 WDR46O15213 610 aaKnown RBP10.12□□□□□ -0.79
CCDC47-207ENST00000612558 SNAP25P60880 206 aa10.12□□□□□ -0.79
CCDC47-207ENST00000612558 LETM2Q2VYF4 491 aa10.12□□□□□ -0.79
CCDC47-207ENST00000612558 SPECC1Q5M775 1068 aa10.12□□□□□ -0.79
CCDC47-207ENST00000612558 USP50Q70EL3 339 aaPredicted RBP10.12□□□□□ -0.79
CCDC47-207ENST00000612558 SULF1Q8IWU6 871 aa10.12□□□□□ -0.79
CCDC47-207ENST00000612558 TTC13Q8NBP0 860 aa10.12□□□□□ -0.79
CCDC47-207ENST00000612558 KIFC2Q96AC6 838 aa10.12□□□□□ -0.79
CCDC47-207ENST00000612558 KLRG1Q96E93 195 aa10.12□□□□□ -0.79
CCDC47-207ENST00000612558 SRCAPQ6ZRS2 3230 aa10.11□□□□□ -0.79
CCDC47-207ENST00000612558 DOCK1Q14185 1865 aa10.11□□□□□ -0.79
CCDC47-207ENST00000612558 GLTPD2A6NH11 291 aa10.11□□□□□ -0.79
CCDC47-207ENST00000612558 CCNT1O60563 726 aaKnown RBP10.11□□□□□ -0.79
CCDC47-207ENST00000612558 CAVIN2O95810 425 aa10.11□□□□□ -0.79
CCDC47-207ENST00000612558 PTPRAP18433 802 aa10.11□□□□□ -0.79
CCDC47-207ENST00000612558 LONP1P36776 959 aaKnown RBP10.11□□□□□ -0.79
CCDC47-207ENST00000612558 PRPHP41219 470 aa10.11□□□□□ -0.79
CCDC47-207ENST00000612558 UBE2SQ16763 222 aa10.11□□□□□ -0.79
CCDC47-207ENST00000612558 UVSSAQ2YD98 709 aa10.11□□□□□ -0.79
CCDC47-207ENST00000612558 NOL9Q5SY16 702 aaKnown RBP10.11□□□□□ -0.79
CCDC47-207ENST00000612558 DTHD1Q6ZMT9 781 aa10.11□□□□□ -0.79
CCDC47-207ENST00000612558 ZNF280CQ8ND82 737 aa10.11□□□□□ -0.79
CCDC47-207ENST00000612558 CNNM3Q8NE01 707 aa10.11□□□□□ -0.79
CCDC47-207ENST00000612558 ZC3H15Q8WU90 426 aaKnown RBP10.11□□□□□ -0.79
CCDC47-207ENST00000612558 ANP32BQ92688 251 aaKnown RBP10.11□□□□□ -0.79
CCDC47-207ENST00000612558 ZKSCAN4Q969J2 545 aaPredicted RBP10.11□□□□□ -0.79
CCDC47-207ENST00000612558 RANBP17Q9H2T7 1088 aaKnown RBP10.11□□□□□ -0.79
CCDC47-207ENST00000612558 HOOK1Q9UJC3 728 aaKnown RBP10.11□□□□□ -0.79
CCDC47-207ENST00000612558 C19orf81C9J6K1 198 aa10.1□□□□□ -0.79
CCDC47-207ENST00000612558 MEIS2O14770 477 aa10.1□□□□□ -0.79
CCDC47-207ENST00000612558 POLR2DO15514 142 aaKnown RBP10.1□□□□□ -0.79
CCDC47-207ENST00000612558 NEMFO60524 1076 aa10.1□□□□□ -0.79
CCDC47-207ENST00000612558 USP2O75604 605 aaPredicted RBP10.1□□□□□ -0.79
CCDC47-207ENST00000612558 FOSP01100 380 aaPredicted RBP10.1□□□□□ -0.79
CCDC47-207ENST00000612558 EPHX2P34913 555 aa10.1□□□□□ -0.79
CCDC47-207ENST00000612558 BACE1P56817 501 aa10.1□□□□□ -0.79
CCDC47-207ENST00000612558 SPP2Q13103 211 aa10.1□□□□□ -0.79
CCDC47-207ENST00000612558 AP3B2Q13367 1082 aa10.1□□□□□ -0.79
CCDC47-207ENST00000612558 MTMR2Q13614 643 aa10.1□□□□□ -0.79
CCDC47-207ENST00000612558 IL17AQ16552 155 aa10.1□□□□□ -0.79
CCDC47-207ENST00000612558 USH1GQ495M9 461 aa10.1□□□□□ -0.79
CCDC47-207ENST00000612558 LONRF3Q496Y0 759 aa10.1□□□□□ -0.79
CCDC47-207ENST00000612558 KANK3Q6NY19 840 aa10.1□□□□□ -0.79
CCDC47-207ENST00000612558 PADI6Q6TGC4 694 aa10.1□□□□□ -0.79
CCDC47-207ENST00000612558 KRBA2Q6ZNG9 492 aa10.1□□□□□ -0.79
CCDC47-207ENST00000612558 USP49Q70CQ1 688 aa10.1□□□□□ -0.79
CCDC47-207ENST00000612558 PRPF38AQ8NAV1 312 aaKnown RBP10.1□□□□□ -0.79
CCDC47-207ENST00000612558 RNF214Q8ND24 703 aa10.1□□□□□ -0.79
CCDC47-207ENST00000612558 CCDC34Q96HJ3 373 aa10.1□□□□□ -0.79
CCDC47-207ENST00000612558 NAP1L4Q99733 375 aaKnown RBP10.1□□□□□ -0.79
CCDC47-207ENST00000612558 PYM1Q9BRP8 204 aaKnown RBP10.1□□□□□ -0.79
CCDC47-207ENST00000612558 TMEM60Q9H2L4 133 aa10.1□□□□□ -0.79
CCDC47-207ENST00000612558 USP17L15C9J2P7 530 aa10.09□□□□□ -0.79
CCDC47-207ENST00000612558 USP17L13C9JLJ4 530 aa10.09□□□□□ -0.79
CCDC47-207ENST00000612558 USP17L11C9JVI0 530 aa10.09□□□□□ -0.79
CCDC47-207ENST00000612558 USP17L18D6R9N7 530 aa10.09□□□□□ -0.79
CCDC47-207ENST00000612558 USP17L22D6RA61 530 aa10.09□□□□□ -0.79
CCDC47-207ENST00000612558 USP17L17D6RBQ6 530 aa10.09□□□□□ -0.79
CCDC47-207ENST00000612558 USP17L19D6RCP7 530 aa10.09□□□□□ -0.79
CCDC47-207ENST00000612558 USP17L20D6RJB6 530 aa10.09□□□□□ -0.79
CCDC47-207ENST00000612558 OR52Z1P0C646 297 aa10.09□□□□□ -0.79
CCDC47-207ENST00000612558 GCFC2P16383 781 aaKnown RBP10.09□□□□□ -0.79
CCDC47-207ENST00000612558 USP11P51784 963 aa10.09□□□□□ -0.79
CCDC47-207ENST00000612558 USP17L24Q0WX57 530 aa10.09□□□□□ -0.79
CCDC47-207ENST00000612558 STX1AQ16623 288 aa10.09□□□□□ -0.79
CCDC47-207ENST00000612558 PPP4R3AQ6IN85 833 aa10.09□□□□□ -0.79
CCDC47-207ENST00000612558 CCDC174Q6PII3 467 aa10.09□□□□□ -0.79
CCDC47-207ENST00000612558 USP17L6PQ6QN14 398 aa10.09□□□□□ -0.79
CCDC47-207ENST00000612558 KRT26Q7Z3Y9 468 aa10.09□□□□□ -0.79
CCDC47-207ENST00000612558 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.09□□□□□ -0.79
CCDC47-207ENST00000612558 SYMPKQ92797 1274 aaKnown RBP10.09□□□□□ -0.79
CCDC47-207ENST00000612558 EPSTI1Q96J88 318 aa10.09□□□□□ -0.79
CCDC47-207ENST00000612558 SLF1Q9BQI6 1058 aa10.09□□□□□ -0.79
CCDC47-207ENST00000612558 PANK2Q9BZ23 570 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms