RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 WWC2Q6AWC2 1192 aa11.54□□□□□ -0.56
UPF1-213ENST00000601981 ZNF467Q7Z7K2 595 aaPredicted RBP11.54□□□□□ -0.56
UPF1-213ENST00000601981 MSL3Q8N5Y2 521 aaKnown RBP11.54□□□□□ -0.56
UPF1-213ENST00000601981 BICD2Q8TD16 824 aa11.54□□□□□ -0.56
UPF1-213ENST00000601981 CLEC4DQ8WXI8 215 aa11.54□□□□□ -0.56
UPF1-213ENST00000601981 USP6NLQ92738 828 aa11.54□□□□□ -0.56
UPF1-213ENST00000601981 GPKOWQ92917 476 aaPredicted RBP eCLIP11.54□□□□□ -0.56
UPF1-213ENST00000601981 PSTPIP2Q9H939 334 aa11.54□□□□□ -0.56
UPF1-213ENST00000601981 EHMT1Q9H9B1 1298 aa11.54□□□□□ -0.56
UPF1-213ENST00000601981 C6orf50Q9HD87 102 aa11.54□□□□□ -0.56
UPF1-213ENST00000601981 SH3GLB2Q9NR46 395 aa11.54□□□□□ -0.56
UPF1-213ENST00000601981 DNAJC25-GNG10A0A024R161 153 aa11.53□□□□□ -0.56
UPF1-213ENST00000601981 PRPF40AO75400 957 aaKnown RBP11.53□□□□□ -0.56
UPF1-213ENST00000601981 MBD3O95983 291 aa11.53□□□□□ -0.56
UPF1-213ENST00000601981 TAL1P17542 331 aaPredicted RBP11.53□□□□□ -0.56
UPF1-213ENST00000601981 ADCY7P51828 1080 aa11.53□□□□□ -0.56
UPF1-213ENST00000601981 GHRHRQ02643 423 aa11.53□□□□□ -0.56
UPF1-213ENST00000601981 TRIM29Q14134 588 aa11.53□□□□□ -0.56
UPF1-213ENST00000601981 ZNF792Q3KQV3 632 aa11.53□□□□□ -0.56
UPF1-213ENST00000601981 MCTP2Q6DN12 878 aa11.53□□□□□ -0.56
UPF1-213ENST00000601981 SLC30A10Q6XR72 485 aa11.53□□□□□ -0.56
UPF1-213ENST00000601981 DNERQ8NFT8 737 aa11.53□□□□□ -0.56
UPF1-213ENST00000601981 MAML3Q96JK9 1138 aa11.53□□□□□ -0.56
UPF1-213ENST00000601981 CHAMP1Q96JM3 812 aa11.53□□□□□ -0.56
UPF1-213ENST00000601981 CNPY2Q9Y2B0 182 aa11.53□□□□□ -0.56
UPF1-213ENST00000601981 DDX49Q9Y6V7 483 aaKnown RBP11.53□□□□□ -0.56
UPF1-213ENST00000601981 KIAA1217Q5T5P2 1943 aa11.52□□□□□ -0.56
UPF1-213ENST00000601981 ESYT2A0FGR8 921 aa11.52□□□□□ -0.57
UPF1-213ENST00000601981 SMCO2A6NFE2 343 aa11.52□□□□□ -0.57
UPF1-213ENST00000601981 SPDYE3A6NKU9 549 aa11.52□□□□□ -0.57
UPF1-213ENST00000601981 STXBP3O00186 592 aa11.52□□□□□ -0.57
UPF1-213ENST00000601981 PIK3CDO00329 1044 aa11.52□□□□□ -0.57
UPF1-213ENST00000601981 COBLO75128 1261 aa11.52□□□□□ -0.57
UPF1-213ENST00000601981 HSD17B4P51659 736 aa11.52□□□□□ -0.57
UPF1-213ENST00000601981 NLRP5P59047 1200 aa11.52□□□□□ -0.57
UPF1-213ENST00000601981 KRT85P78386 507 aa11.52□□□□□ -0.57
UPF1-213ENST00000601981 CAP1Q01518 475 aa11.52□□□□□ -0.57
UPF1-213ENST00000601981 DNM1Q05193 864 aaKnown RBP11.52□□□□□ -0.57
UPF1-213ENST00000601981 GSE1Q14687 1217 aa11.52□□□□□ -0.57
UPF1-213ENST00000601981 PKN1Q16512 942 aa11.52□□□□□ -0.57
UPF1-213ENST00000601981 FERMT3Q86UX7 667 aa11.52□□□□□ -0.57
UPF1-213ENST00000601981 FAM133AQ8N9E0 248 aa11.52□□□□□ -0.57
UPF1-213ENST00000601981 NSUN6Q8TEA1 469 aaKnown RBP11.52□□□□□ -0.57
UPF1-213ENST00000601981 C8orf76Q96K31 380 aa11.52□□□□□ -0.57
UPF1-213ENST00000601981 BRMS1Q9HCU9 246 aa11.52□□□□□ -0.57
UPF1-213ENST00000601981 SYNGAP1Q96PV0 1343 aa11.52□□□□□ -0.57
UPF1-213ENST00000601981 PPFIA3O75145 1194 aa11.51□□□□□ -0.57
UPF1-213ENST00000601981 FOSP01100 380 aaPredicted RBP11.51□□□□□ -0.57
UPF1-213ENST00000601981 ELNP15502 786 aa11.51□□□□□ -0.57
UPF1-213ENST00000601981 NCLP19338 710 aaKnown RBP11.51□□□□□ -0.57
UPF1-213ENST00000601981 ALDH5A1P51649 535 aaPredicted RBP11.51□□□□□ -0.57
UPF1-213ENST00000601981 CNTN2Q02246 1040 aa11.51□□□□□ -0.57
UPF1-213ENST00000601981 FOXD4L6Q3SYB3 417 aaPredicted RBP11.51□□□□□ -0.57
UPF1-213ENST00000601981 ARHGEF16Q5VV41 709 aa11.51□□□□□ -0.57
UPF1-213ENST00000601981 ATL3Q6DD88 541 aa11.51□□□□□ -0.57
UPF1-213ENST00000601981 GALNT17Q6IS24 598 aa11.51□□□□□ -0.57
UPF1-213ENST00000601981 FOXD4L3Q6VB84 417 aaPredicted RBP11.51□□□□□ -0.57
UPF1-213ENST00000601981 FCHSD1Q86WN1 690 aa11.51□□□□□ -0.57
UPF1-213ENST00000601981 FBXO18Q8NFZ0 1043 aa11.51□□□□□ -0.57
UPF1-213ENST00000601981 NPLOC4Q8TAT6 608 aa11.51□□□□□ -0.57
UPF1-213ENST00000601981 SYTL5Q8TDW5 730 aaPredicted RBP11.51□□□□□ -0.57
UPF1-213ENST00000601981 TRIB2Q92519 343 aa11.51□□□□□ -0.57
UPF1-213ENST00000601981 IWS1Q96ST2 819 aa11.51□□□□□ -0.57
UPF1-213ENST00000601981 RMDN3Q96TC7 470 aa11.51□□□□□ -0.57
UPF1-213ENST00000601981 TINF2Q9BSI4 451 aa11.51□□□□□ -0.57
UPF1-213ENST00000601981 ALG1Q9BT22 464 aa11.51□□□□□ -0.57
UPF1-213ENST00000601981 ZMYND12Q9H0C1 365 aa11.51□□□□□ -0.57
UPF1-213ENST00000601981 RIC8AQ9NPQ8 531 aa11.51□□□□□ -0.57
UPF1-213ENST00000601981 NRBP1Q9UHY1 535 aa11.51□□□□□ -0.57
UPF1-213ENST00000601981 ELP1O95163 1332 aa11.51□□□□□ -0.57
UPF1-213ENST00000601981 INHAP05111 366 aa11.5□□□□□ -0.57
UPF1-213ENST00000601981 HOXA13P31271 388 aaPredicted RBP11.5□□□□□ -0.57
UPF1-213ENST00000601981 PDE4DQ08499 809 aa11.5□□□□□ -0.57
UPF1-213ENST00000601981 AP3B2Q13367 1082 aa11.5□□□□□ -0.57
UPF1-213ENST00000601981 MAMDC4Q6UXC1 1216 aa11.5□□□□□ -0.57
UPF1-213ENST00000601981 ARMCX2Q7L311 632 aa11.5□□□□□ -0.57
UPF1-213ENST00000601981 BRAPQ7Z569 592 aa11.5□□□□□ -0.57
UPF1-213ENST00000601981 REXO1Q8N1G1 1221 aaKnown RBP11.5□□□□□ -0.57
UPF1-213ENST00000601981 GPT2Q8TD30 523 aa11.5□□□□□ -0.57
UPF1-213ENST00000601981 SCAND2PQ9GZW5 306 aaPredicted RBP11.5□□□□□ -0.57
UPF1-213ENST00000601981 VPS54Q9P1Q0 977 aa11.5□□□□□ -0.57
UPF1-213ENST00000601981 MYH7BA7E2Y1 1941 aa11.5□□□□□ -0.57
UPF1-213ENST00000601981 LRRC37A2A6NM11 1700 aa11.49□□□□□ -0.57
UPF1-213ENST00000601981 MEIS2O14770 477 aa11.49□□□□□ -0.57
UPF1-213ENST00000601981 OPLAHO14841 1288 aa11.49□□□□□ -0.57
UPF1-213ENST00000601981 FIBPO43427 364 aa11.49□□□□□ -0.57
UPF1-213ENST00000601981 PRKAR2AP13861 404 aaKnown RBP11.49□□□□□ -0.57
UPF1-213ENST00000601981 FOSBP53539 338 aa11.49□□□□□ -0.57
UPF1-213ENST00000601981 UBE2HP62256 183 aa11.49□□□□□ -0.57
UPF1-213ENST00000601981 SAFBQ15424 915 aaKnown RBP eCLIP11.49□□□□□ -0.57
UPF1-213ENST00000601981 CCL14Q16627 93 aa11.49□□□□□ -0.57
UPF1-213ENST00000601981 USP17L6PQ6QN14 398 aa11.49□□□□□ -0.57
UPF1-213ENST00000601981 SH3TC2Q8TF17 1288 aa11.49□□□□□ -0.57
UPF1-213ENST00000601981 TBC1D5Q92609 795 aa11.49□□□□□ -0.57
UPF1-213ENST00000601981 ARMC5Q96C12 935 aa11.49□□□□□ -0.57
UPF1-213ENST00000601981 ABHD16BQ9H3Z7 469 aa11.49□□□□□ -0.57
UPF1-213ENST00000601981 GDPD2Q9HCC8 539 aa11.49□□□□□ -0.57
UPF1-213ENST00000601981 HMX1Q9NP08 348 aaPredicted RBP11.49□□□□□ -0.57
UPF1-213ENST00000601981 PXMP2Q9NR77 195 aa11.49□□□□□ -0.57
UPF1-213ENST00000601981 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms