RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 NACAP1Q9BZK3 213 aa10.24□□□□□ -0.77
SHKBP1-220ENST00000599716 SLC28A3Q9HAS3 691 aa10.24□□□□□ -0.77
SHKBP1-220ENST00000599716 ZNF287Q9HBT7 754 aa10.24□□□□□ -0.77
SHKBP1-220ENST00000599716 TOMM22Q9NS69 142 aa10.24□□□□□ -0.77
SHKBP1-220ENST00000599716 MSRAQ9UJ68 235 aa10.24□□□□□ -0.77
SHKBP1-220ENST00000599716 PTPDC1A2A3K4 754 aa10.23□□□□□ -0.77
SHKBP1-220ENST00000599716 EPOPA6NHQ4 379 aa10.23□□□□□ -0.77
SHKBP1-220ENST00000599716 ASB14A6NK59 587 aa10.23□□□□□ -0.77
SHKBP1-220ENST00000599716 CALML3P27482 149 aa10.23□□□□□ -0.77
SHKBP1-220ENST00000599716 FAM47CQ5HY64 1035 aa10.23□□□□□ -0.77
SHKBP1-220ENST00000599716 PPP2R2DQ66LE6 453 aa10.23□□□□□ -0.77
SHKBP1-220ENST00000599716 TMCO2Q7Z6W1 182 aaPredicted RBP10.23□□□□□ -0.77
SHKBP1-220ENST00000599716 TET1Q8NFU7 2136 aa10.23□□□□□ -0.77
SHKBP1-220ENST00000599716 PHOX2BQ99453 314 aa10.23□□□□□ -0.77
SHKBP1-220ENST00000599716 ALDH8A1Q9H2A2 487 aaPredicted RBP10.23□□□□□ -0.77
SHKBP1-220ENST00000599716 CPVLQ9H3G5 476 aa10.23□□□□□ -0.77
SHKBP1-220ENST00000599716 CHMP4BQ9H444 224 aaKnown RBP10.23□□□□□ -0.77
SHKBP1-220ENST00000599716 ZNF292O60281 2723 aa10.23□□□□□ -0.77
SHKBP1-220ENST00000599716 SLC3A2P08195 630 aaKnown RBP10.22□□□□□ -0.77
SHKBP1-220ENST00000599716 ALADP13716 330 aa10.22□□□□□ -0.77
SHKBP1-220ENST00000599716 ALDH5A1P51649 535 aaPredicted RBP10.22□□□□□ -0.77
SHKBP1-220ENST00000599716 HAND2P61296 217 aa10.22□□□□□ -0.77
SHKBP1-220ENST00000599716 NKX3-2P78367 333 aa10.22□□□□□ -0.77
SHKBP1-220ENST00000599716 RAB30Q15771 203 aa10.22□□□□□ -0.77
SHKBP1-220ENST00000599716 TKFCQ3LXA3 575 aa10.22□□□□□ -0.77
SHKBP1-220ENST00000599716 FAM227BQ96M60 508 aa10.22□□□□□ -0.77
SHKBP1-220ENST00000599716 WDR11Q9BZH6 1224 aa10.22□□□□□ -0.77
SHKBP1-220ENST00000599716 RANBP17Q9H2T7 1088 aaKnown RBP10.22□□□□□ -0.77
SHKBP1-220ENST00000599716 SLC4A7Q9Y6M7 1214 aa10.22□□□□□ -0.77
SHKBP1-220ENST00000599716 FLNBO75369 2602 aaKnown RBP10.22□□□□□ -0.77
SHKBP1-220ENST00000599716 A0A0D9SFI3 127 aa10.21□□□□□ -0.77
SHKBP1-220ENST00000599716 RGS20O76081 388 aa10.21□□□□□ -0.77
SHKBP1-220ENST00000599716 ICAM1P05362 532 aa10.21□□□□□ -0.77
SHKBP1-220ENST00000599716 CA3P07451 260 aa10.21□□□□□ -0.77
SHKBP1-220ENST00000599716 ATP2A2P16615 1042 aaKnown RBP10.21□□□□□ -0.77
SHKBP1-220ENST00000599716 MX1P20591 662 aa10.21□□□□□ -0.77
SHKBP1-220ENST00000599716 PURAQ00577 322 aaKnown RBP10.21□□□□□ -0.77
SHKBP1-220ENST00000599716 NBPF20Q3BBV1 942 aa10.21□□□□□ -0.77
SHKBP1-220ENST00000599716 SYDE2Q5VT97 1194 aa10.21□□□□□ -0.77
SHKBP1-220ENST00000599716 IQSEC1Q6DN90 963 aa10.21□□□□□ -0.77
SHKBP1-220ENST00000599716 OR6J1Q8NGC5 347 aa10.21□□□□□ -0.77
SHKBP1-220ENST00000599716 CLEC4DQ8WXI8 215 aa10.21□□□□□ -0.77
SHKBP1-220ENST00000599716 TMEM47Q9BQJ4 181 aa10.21□□□□□ -0.77
SHKBP1-220ENST00000599716 CD320Q9NPF0 282 aa10.21□□□□□ -0.77
SHKBP1-220ENST00000599716 SYNPO2Q9UMS6 1093 aa10.21□□□□□ -0.77
SHKBP1-220ENST00000599716 TNKSO95271 1327 aa10.21□□□□□ -0.78
SHKBP1-220ENST00000599716 TTC41PQ6P2S7 1318 aa10.21□□□□□ -0.78
SHKBP1-220ENST00000599716 DMXL1Q9Y485 3027 aa10.21□□□□□ -0.78
SHKBP1-220ENST00000599716 PTPRSQ13332 1948 aa10.21□□□□□ -0.78
SHKBP1-220ENST00000599716 MAST4O15021 2626 aa10.2□□□□□ -0.78
SHKBP1-220ENST00000599716 ZEB2O60315 1214 aa10.2□□□□□ -0.78
SHKBP1-220ENST00000599716 CABYRO75952 493 aa10.2□□□□□ -0.78
SHKBP1-220ENST00000599716 ARIH2O95376 493 aa10.2□□□□□ -0.78
SHKBP1-220ENST00000599716 GOLGA8HP0CJ92 632 aa10.2□□□□□ -0.78
SHKBP1-220ENST00000599716 FDX1P10109 184 aa10.2□□□□□ -0.78
SHKBP1-220ENST00000599716 TRIP12Q14669 1992 aaPredicted RBP10.2□□□□□ -0.78
SHKBP1-220ENST00000599716 USH1GQ495M9 461 aa10.2□□□□□ -0.78
SHKBP1-220ENST00000599716 DUSP28Q4G0W2 176 aa10.2□□□□□ -0.78
SHKBP1-220ENST00000599716 FAM208BQ5VWN6 2430 aa10.2□□□□□ -0.78
SHKBP1-220ENST00000599716 ZNF589Q86UQ0 364 aaPredicted RBP10.2□□□□□ -0.78
SHKBP1-220ENST00000599716 TBC1D5Q92609 795 aa10.2□□□□□ -0.78
SHKBP1-220ENST00000599716 ZKSCAN3Q9BRR0 538 aa10.2□□□□□ -0.78
SHKBP1-220ENST00000599716 SALL3Q9BXA9 1300 aa10.2□□□□□ -0.78
SHKBP1-220ENST00000599716 MTIF3Q9H2K0 278 aaKnown RBP10.2□□□□□ -0.78
SHKBP1-220ENST00000599716 VTA1Q9NP79 307 aa10.2□□□□□ -0.78
SHKBP1-220ENST00000599716 GPR179Q6PRD1 2367 aa10.19□□□□□ -0.78
SHKBP1-220ENST00000599716 SCN10AQ9Y5Y9 1956 aa10.19□□□□□ -0.78
SHKBP1-220ENST00000599716 GFRA3O60609 400 aa10.19□□□□□ -0.78
SHKBP1-220ENST00000599716 PLA2G6O60733 806 aa10.19□□□□□ -0.78
SHKBP1-220ENST00000599716 KRT37O76014 449 aa10.19□□□□□ -0.78
SHKBP1-220ENST00000599716 FGAP02671 866 aa10.19□□□□□ -0.78
SHKBP1-220ENST00000599716 PDHBP11177 359 aa10.19□□□□□ -0.78
SHKBP1-220ENST00000599716 RPS6P62753 249 aaKnown RBP10.19□□□□□ -0.78
SHKBP1-220ENST00000599716 TCTN1Q2MV58 587 aa10.19□□□□□ -0.78
SHKBP1-220ENST00000599716 ANKRD45Q5TZF3 282 aa10.19□□□□□ -0.78
SHKBP1-220ENST00000599716 TBC1D10CQ8IV04 446 aa10.19□□□□□ -0.78
SHKBP1-220ENST00000599716 MORC4Q8TE76 937 aa10.19□□□□□ -0.78
SHKBP1-220ENST00000599716 DCAF4Q8WV16 495 aa10.19□□□□□ -0.78
SHKBP1-220ENST00000599716 ARNTL2Q8WYA1 636 aa10.19□□□□□ -0.78
SHKBP1-220ENST00000599716 TANC1Q9C0D5 1861 aa10.19□□□□□ -0.78
SHKBP1-220ENST00000599716 LCHNA4D1U4 455 aa10.18□□□□□ -0.78
SHKBP1-220ENST00000599716 ORC4O43929 436 aa10.18□□□□□ -0.78
SHKBP1-220ENST00000599716 SORBS3O60504 671 aa10.18□□□□□ -0.78
SHKBP1-220ENST00000599716 TOP1P11387 765 aaKnown RBP10.18□□□□□ -0.78
SHKBP1-220ENST00000599716 NOVP48745 357 aa10.18□□□□□ -0.78
SHKBP1-220ENST00000599716 PTPN5P54829 565 aa10.18□□□□□ -0.78
SHKBP1-220ENST00000599716 PDE4DQ08499 809 aa10.18□□□□□ -0.78
SHKBP1-220ENST00000599716 NMIQ13287 307 aaPredicted RBP10.18□□□□□ -0.78
SHKBP1-220ENST00000599716 PPP2R5BQ15173 497 aa10.18□□□□□ -0.78
SHKBP1-220ENST00000599716 LRRFIP1Q32MZ4 808 aaKnown RBP10.18□□□□□ -0.78
SHKBP1-220ENST00000599716 TMEM67Q5HYA8 995 aa10.18□□□□□ -0.78
SHKBP1-220ENST00000599716 BTNL9Q6UXG8 535 aa10.18□□□□□ -0.78
SHKBP1-220ENST00000599716 RNF207Q6ZRF8 634 aa10.18□□□□□ -0.78
SHKBP1-220ENST00000599716 CHST3Q7LGC8 479 aa10.18□□□□□ -0.78
SHKBP1-220ENST00000599716 RPUSD2Q8IZ73 545 aaKnown RBP10.18□□□□□ -0.78
SHKBP1-220ENST00000599716 GJD3Q8N144 294 aa10.18□□□□□ -0.78
SHKBP1-220ENST00000599716 HLA-CQ95604 372 aa10.18□□□□□ -0.78
SHKBP1-220ENST00000599716 MTG1Q9BT17 334 aaPredicted RBP10.18□□□□□ -0.78
SHKBP1-220ENST00000599716 FTOQ9C0B1 505 aaKnown RBP eCLIP10.18□□□□□ -0.78
SHKBP1-220ENST00000599716 UBA5Q9GZZ9 404 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms