RNA–Protein interactions for RNA: ENST00000599138.5

VRK3-215, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 503 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-215ENST00000599138 HABP4Q5JVS0 413 aaKnown RBP11.23□□□□□ -0.61
VRK3-215ENST00000599138 GNASQ5JWF2 1037 aa11.23□□□□□ -0.61
VRK3-215ENST00000599138 CHRDL2Q6WN34 429 aa11.23□□□□□ -0.61
VRK3-215ENST00000599138 MICU3Q86XE3 530 aa11.23□□□□□ -0.61
VRK3-215ENST00000599138 RAB11FIP4Q86YS3 637 aa11.23□□□□□ -0.61
VRK3-215ENST00000599138 SCFD2Q8WU76 684 aa11.23□□□□□ -0.61
VRK3-215ENST00000599138 RRP36Q96EU6 259 aaKnown RBP11.23□□□□□ -0.61
VRK3-215ENST00000599138 JAKMIP1Q96N16 626 aaKnown RBP11.23□□□□□ -0.61
VRK3-215ENST00000599138 GDF15Q99988 308 aa11.23□□□□□ -0.61
VRK3-215ENST00000599138 AGXT2Q9BYV1 514 aa11.23□□□□□ -0.61
VRK3-215ENST00000599138 WDR11Q9BZH6 1224 aa11.23□□□□□ -0.61
VRK3-215ENST00000599138 PXMP2Q9NR77 195 aa11.23□□□□□ -0.61
VRK3-215ENST00000599138 ELP1O95163 1332 aa11.23□□□□□ -0.61
VRK3-215ENST00000599138 GCOM1H8Y6P7 765 aaPredicted RBP11.22□□□□□ -0.61
VRK3-215ENST00000599138 NKRFO15226 690 aaKnown RBP eCLIP11.22□□□□□ -0.61
VRK3-215ENST00000599138 DYNC1LI2O43237 492 aaPredicted RBP11.22□□□□□ -0.61
VRK3-215ENST00000599138 ZBTB43O43298 467 aa11.22□□□□□ -0.61
VRK3-215ENST00000599138 ASGR1P07306 291 aa11.22□□□□□ -0.61
VRK3-215ENST00000599138 NR3C2P08235 984 aa11.22□□□□□ -0.61
VRK3-215ENST00000599138 POLR2MP0CAP2 368 aa11.22□□□□□ -0.61
VRK3-215ENST00000599138 CPA1P15085 419 aa11.22□□□□□ -0.61
VRK3-215ENST00000599138 SYN1P17600 705 aa11.22□□□□□ -0.61
VRK3-215ENST00000599138 HOXA13P31271 388 aaPredicted RBP11.22□□□□□ -0.61
VRK3-215ENST00000599138 BMP8BP34820 402 aa11.22□□□□□ -0.61
VRK3-215ENST00000599138 BEX3Q00994 111 aa11.22□□□□□ -0.61
VRK3-215ENST00000599138 FSCN1Q16658 493 aaKnown RBP11.22□□□□□ -0.61
VRK3-215ENST00000599138 CCDC62Q6P9F0 684 aa11.22□□□□□ -0.61
VRK3-215ENST00000599138 SYNE3Q6ZMZ3 975 aa11.22□□□□□ -0.61
VRK3-215ENST00000599138 NOL8Q76FK4 1167 aaKnown RBP11.22□□□□□ -0.61
VRK3-215ENST00000599138 ANKRD33Q7Z3H0 272 aa11.22□□□□□ -0.61
VRK3-215ENST00000599138 CMTR1Q8N1G2 835 aaKnown RBP11.22□□□□□ -0.61
VRK3-215ENST00000599138 TOX2Q96NM4 488 aa11.22□□□□□ -0.61
VRK3-215ENST00000599138 PDCD2LQ9BRP1 358 aa11.22□□□□□ -0.61
VRK3-215ENST00000599138 AP5M1Q9H0R1 490 aa11.22□□□□□ -0.61
VRK3-215ENST00000599138 STARD7Q9NQZ5 370 aa11.22□□□□□ -0.61
VRK3-215ENST00000599138 FAM217BQ9NTX9 383 aaPredicted RBP11.22□□□□□ -0.61
VRK3-215ENST00000599138 RBM28Q9NW13 759 aaKnown RBP11.22□□□□□ -0.61
VRK3-215ENST00000599138 RBM27Q9P2N5 1060 aaKnown RBP11.22□□□□□ -0.61
VRK3-215ENST00000599138 SCN10AQ9Y5Y9 1956 aa11.21□□□□□ -0.61
VRK3-215ENST00000599138 NID2Q14112 1375 aa11.21□□□□□ -0.61
VRK3-215ENST00000599138 FRMPD4Q14CM0 1322 aa11.21□□□□□ -0.61
VRK3-215ENST00000599138 CNTNAP5Q8WYK1 1306 aa11.21□□□□□ -0.61
VRK3-215ENST00000599138 KLF18A0A0U1RQI7 1052 aa11.21□□□□□ -0.61
VRK3-215ENST00000599138 PIK3CDO00329 1044 aa11.21□□□□□ -0.61
VRK3-215ENST00000599138 EIF3JO75822 258 aaKnown RBP11.21□□□□□ -0.61
VRK3-215ENST00000599138 ARIH2O95376 493 aa11.21□□□□□ -0.61
VRK3-215ENST00000599138 EIF2AK2P19525 551 aaKnown RBP11.21□□□□□ -0.61
VRK3-215ENST00000599138 RPS6KB1P23443 525 aa11.21□□□□□ -0.61
VRK3-215ENST00000599138 PSMA5P28066 241 aa11.21□□□□□ -0.61
VRK3-215ENST00000599138 MAGEA10P43363 369 aaPredicted RBP11.21□□□□□ -0.61
VRK3-215ENST00000599138 CDK7P50613 346 aa11.21□□□□□ -0.61
VRK3-215ENST00000599138 EVCP57679 992 aa11.21□□□□□ -0.61
VRK3-215ENST00000599138 TLE2Q04725 743 aa11.21□□□□□ -0.61
VRK3-215ENST00000599138 STXBP2Q15833 593 aa11.21□□□□□ -0.61
VRK3-215ENST00000599138 ARHGEF16Q5VV41 709 aa11.21□□□□□ -0.61
VRK3-215ENST00000599138 BLOC1S2Q6QNY1 142 aa11.21□□□□□ -0.61
VRK3-215ENST00000599138 Q6ZUG5 572 aa11.21□□□□□ -0.61
VRK3-215ENST00000599138 VSIG10LQ86VR7 867 aa11.21□□□□□ -0.61
VRK3-215ENST00000599138 PIBF1Q8WXW3 757 aa11.21□□□□□ -0.61
VRK3-215ENST00000599138 GLT1D1Q96MS3 346 aa11.21□□□□□ -0.61
VRK3-215ENST00000599138 ZSWIM6Q9HCJ5 1215 aa11.21□□□□□ -0.61
VRK3-215ENST00000599138 PDLIM7Q9NR12 457 aa11.21□□□□□ -0.61
VRK3-215ENST00000599138 SEC63Q9UGP8 760 aaKnown RBP11.21□□□□□ -0.61
VRK3-215ENST00000599138 ATP11BQ9Y2G3 1177 aa11.21□□□□□ -0.61
VRK3-215ENST00000599138 LTBP2Q14767 1821 aa11.21□□□□□ -0.62
VRK3-215ENST00000599138 A0A1W2PPC1 479 aa11.2□□□□□ -0.62
VRK3-215ENST00000599138 A6NJR5 290 aa11.2□□□□□ -0.62
VRK3-215ENST00000599138 MEIS2O14770 477 aa11.2□□□□□ -0.62
VRK3-215ENST00000599138 ZEB2O60315 1214 aa11.2□□□□□ -0.62
VRK3-215ENST00000599138 CABYRO75952 493 aa11.2□□□□□ -0.62
VRK3-215ENST00000599138 RGS20O76081 388 aa11.2□□□□□ -0.62
VRK3-215ENST00000599138 TXNP10599 105 aaKnown RBP11.2□□□□□ -0.62
VRK3-215ENST00000599138 CASTP20810 708 aaKnown RBP11.2□□□□□ -0.62
VRK3-215ENST00000599138 CDC27P30260 824 aa11.2□□□□□ -0.62
VRK3-215ENST00000599138 TTLL4Q14679 1199 aa11.2□□□□□ -0.62
VRK3-215ENST00000599138 PGM5Q15124 567 aa11.2□□□□□ -0.62
VRK3-215ENST00000599138 PPP2R5BQ15173 497 aa11.2□□□□□ -0.62
VRK3-215ENST00000599138 RTN1Q16799 776 aa11.2□□□□□ -0.62
VRK3-215ENST00000599138 CXCL17Q6UXB2 119 aa11.2□□□□□ -0.62
VRK3-215ENST00000599138 SLC43A3Q8NBI5 491 aa11.2□□□□□ -0.62
VRK3-215ENST00000599138 IL31RAQ8NI17 732 aa11.2□□□□□ -0.62
VRK3-215ENST00000599138 COPS5Q92905 334 aa11.2□□□□□ -0.62
VRK3-215ENST00000599138 TM6SF1Q9BZW5 370 aa11.2□□□□□ -0.62
VRK3-215ENST00000599138 PCDH10Q9P2E7 1040 aa11.2□□□□□ -0.62
VRK3-215ENST00000599138 SZT2Q5T011 3432 aa11.2□□□□□ -0.62
VRK3-215ENST00000599138 MYH7BA7E2Y1 1941 aa11.19□□□□□ -0.62
VRK3-215ENST00000599138 GRIN2DO15399 1336 aa11.19□□□□□ -0.62
VRK3-215ENST00000599138 A0A0U1RQG5 324 aaPredicted RBP11.19□□□□□ -0.62
VRK3-215ENST00000599138 hCG_1642624A0A1W2PR95 340 aa11.19□□□□□ -0.62
VRK3-215ENST00000599138 TRIM43BA6NCK2 446 aa11.19□□□□□ -0.62
VRK3-215ENST00000599138 GOLGA8AA7E2F4 631 aa11.19□□□□□ -0.62
VRK3-215ENST00000599138 GOLGA8BA8MQT2 603 aa11.19□□□□□ -0.62
VRK3-215ENST00000599138 ARVCFO00192 962 aa11.19□□□□□ -0.62
VRK3-215ENST00000599138 APOBRQ0VD83 1088 aa11.19□□□□□ -0.62
VRK3-215ENST00000599138 USP17L6PQ6QN14 398 aa11.19□□□□□ -0.62
VRK3-215ENST00000599138 SEPT14Q6ZU15 432 aa11.19□□□□□ -0.62
VRK3-215ENST00000599138 RUFY3Q7L099 469 aa11.19□□□□□ -0.62
VRK3-215ENST00000599138 SH3RF1Q7Z6J0 888 aa11.19□□□□□ -0.62
VRK3-215ENST00000599138 FCHSD1Q86WN1 690 aa11.19□□□□□ -0.62
VRK3-215ENST00000599138 CCDC82Q8N4S0 544 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms