RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 EPHX1P07099 455 aa7.13□□□□□ -1.27
SMAD4-208ENST00000589706 RAC1P63000 192 aa7.13□□□□□ -1.27
SMAD4-208ENST00000589706 TM4SF20Q53R12 229 aa7.13□□□□□ -1.27
SMAD4-208ENST00000589706 AXDND1Q5T1B0 1012 aaPredicted RBP7.13□□□□□ -1.27
SMAD4-208ENST00000589706 PRAMEF13Q5VWM6 474 aa7.13□□□□□ -1.27
SMAD4-208ENST00000589706 LYPD4Q6UWN0 246 aa7.13□□□□□ -1.27
SMAD4-208ENST00000589706 ACAD11Q709F0 780 aa7.13□□□□□ -1.27
SMAD4-208ENST00000589706 DYMQ7RTS9 669 aa7.13□□□□□ -1.27
SMAD4-208ENST00000589706 NIM1KQ8IY84 436 aa7.13□□□□□ -1.27
SMAD4-208ENST00000589706 ISL2Q96A47 359 aa7.13□□□□□ -1.27
SMAD4-208ENST00000589706 PIDD1Q9HB75 910 aa7.13□□□□□ -1.27
SMAD4-208ENST00000589706 ARHGEF4Q9NR80 690 aa7.13□□□□□ -1.27
SMAD4-208ENST00000589706 KLHL42Q9P2K6 505 aa7.13□□□□□ -1.27
SMAD4-208ENST00000589706 LRP2BPQ9P2M1 347 aa7.13□□□□□ -1.27
SMAD4-208ENST00000589706 TUBGCP6Q96RT7 1819 aa7.13□□□□□ -1.27
SMAD4-208ENST00000589706 TRAV20A0A0B4J274 112 aa7.12□□□□□ -1.27
SMAD4-208ENST00000589706 SPDYE3A6NKU9 549 aa7.12□□□□□ -1.27
SMAD4-208ENST00000589706 DRD2P14416 443 aa7.12□□□□□ -1.27
SMAD4-208ENST00000589706 HOXB4P17483 251 aaPredicted RBP7.12□□□□□ -1.27
SMAD4-208ENST00000589706 MMP14P50281 582 aa7.12□□□□□ -1.27
SMAD4-208ENST00000589706 PABPC4Q13310 644 aaKnown RBP eCLIP7.12□□□□□ -1.27
SMAD4-208ENST00000589706 CBX2Q14781 532 aaPredicted RBP7.12□□□□□ -1.27
SMAD4-208ENST00000589706 FAM209AQ5JX71 171 aa7.12□□□□□ -1.27
SMAD4-208ENST00000589706 SCUBE1Q8IWY4 988 aa7.12□□□□□ -1.27
SMAD4-208ENST00000589706 CCDC144CPQ8IYA2 1237 aa7.12□□□□□ -1.27
SMAD4-208ENST00000589706 LRRN4CLQ8ND94 238 aa7.12□□□□□ -1.27
SMAD4-208ENST00000589706 SECISBP2LQ93073 1101 aaKnown RBP7.12□□□□□ -1.27
SMAD4-208ENST00000589706 AARSD1Q9BTE6 412 aaKnown RBP7.12□□□□□ -1.27
SMAD4-208ENST00000589706 FOXQ1Q9C009 403 aa7.12□□□□□ -1.27
SMAD4-208ENST00000589706 KLHL25Q9H0H3 589 aa7.12□□□□□ -1.27
SMAD4-208ENST00000589706 GSX1Q9H4S2 264 aaPredicted RBP7.12□□□□□ -1.27
SMAD4-208ENST00000589706 SSU72Q9NP77 194 aaKnown RBP7.12□□□□□ -1.27
SMAD4-208ENST00000589706 ACEP12821 1306 aa7.11□□□□□ -1.27
SMAD4-208ENST00000589706 PLD2O14939 933 aa7.11□□□□□ -1.27
SMAD4-208ENST00000589706 CBFA2T2O43439 604 aa7.11□□□□□ -1.27
SMAD4-208ENST00000589706 TIAF1O95411 115 aa7.11□□□□□ -1.27
SMAD4-208ENST00000589706 PTMAP06454 111 aaKnown RBP7.11□□□□□ -1.27
SMAD4-208ENST00000589706 MYCLP1P12525 358 aaPredicted RBP7.11□□□□□ -1.27
SMAD4-208ENST00000589706 CNGA1P29973 690 aa7.11□□□□□ -1.27
SMAD4-208ENST00000589706 ASPAP45381 313 aa7.11□□□□□ -1.27
SMAD4-208ENST00000589706 PPP2R2AP63151 447 aa7.11□□□□□ -1.27
SMAD4-208ENST00000589706 IRX3P78415 501 aaPredicted RBP7.11□□□□□ -1.27
SMAD4-208ENST00000589706 PLEKHG6Q3KR16 790 aa7.11□□□□□ -1.27
SMAD4-208ENST00000589706 FNDC3BQ53EP0 1204 aaKnown RBP7.11□□□□□ -1.27
SMAD4-208ENST00000589706 DCAF15Q66K64 600 aa7.11□□□□□ -1.27
SMAD4-208ENST00000589706 C12orf50Q8NA57 414 aaPredicted RBP7.11□□□□□ -1.27
SMAD4-208ENST00000589706 CHAC2Q8WUX2 184 aa7.11□□□□□ -1.27
SMAD4-208ENST00000589706 STAG1Q8WVM7 1258 aa7.11□□□□□ -1.27
SMAD4-208ENST00000589706 PPP1R14AQ96A00 147 aa7.11□□□□□ -1.27
SMAD4-208ENST00000589706 FGD4Q96M96 766 aa7.11□□□□□ -1.27
SMAD4-208ENST00000589706 RRAGCQ9HB90 399 aa7.11□□□□□ -1.27
SMAD4-208ENST00000589706 NCOA5Q9HCD5 579 aaKnown RBP7.11□□□□□ -1.27
SMAD4-208ENST00000589706 PRDM10Q9NQV6 1147 aa7.11□□□□□ -1.27
SMAD4-208ENST00000589706 MRPS23Q9Y3D9 190 aaKnown RBP7.11□□□□□ -1.27
SMAD4-208ENST00000589706 KAT6BQ8WYB5 2073 aa7.1□□□□□ -1.27
SMAD4-208ENST00000589706 ZBED9Q6R2W3 1325 aa7.1□□□□□ -1.27
SMAD4-208ENST00000589706 TRBV23-1A0A0A0MS06 115 aa7.1□□□□□ -1.27
SMAD4-208ENST00000589706 IRS4O14654 1257 aaPredicted RBP7.1□□□□□ -1.27
SMAD4-208ENST00000589706 FOXN1O15353 648 aa7.1□□□□□ -1.27
SMAD4-208ENST00000589706 ITGAVP06756 1048 aa7.1□□□□□ -1.27
SMAD4-208ENST00000589706 ANKRD39Q53RE8 183 aa7.1□□□□□ -1.27
SMAD4-208ENST00000589706 YOD1Q5VVQ6 348 aaPredicted RBP7.1□□□□□ -1.27
SMAD4-208ENST00000589706 IGF2-ASQ6U949 168 aa7.1□□□□□ -1.27
SMAD4-208ENST00000589706 ADAT2Q7Z6V5 191 aaKnown RBP7.1□□□□□ -1.27
SMAD4-208ENST00000589706 THNSL2Q86YJ6 484 aa7.1□□□□□ -1.27
SMAD4-208ENST00000589706 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.1□□□□□ -1.27
SMAD4-208ENST00000589706 SMYD4Q8IYR2 804 aaPredicted RBP7.1□□□□□ -1.27
SMAD4-208ENST00000589706 ZNF513Q8N8E2 541 aaPredicted RBP7.1□□□□□ -1.27
SMAD4-208ENST00000589706 SMC1BQ8NDV3 1235 aa7.1□□□□□ -1.27
SMAD4-208ENST00000589706 XAGE3Q8WTP9 111 aa7.1□□□□□ -1.27
SMAD4-208ENST00000589706 PPP1R13LQ8WUF5 828 aa7.1□□□□□ -1.27
SMAD4-208ENST00000589706 ZNF622Q969S3 477 aaKnown RBP eCLIP7.1□□□□□ -1.27
SMAD4-208ENST00000589706 ZNF512BQ96KM6 892 aaPredicted RBP7.1□□□□□ -1.27
SMAD4-208ENST00000589706 GBP3Q9H0R5 595 aa7.1□□□□□ -1.27
SMAD4-208ENST00000589706 MRPL18Q9H0U6 180 aaKnown RBP7.1□□□□□ -1.27
SMAD4-208ENST00000589706 IRF2BPLQ9H1B7 796 aa7.1□□□□□ -1.27
SMAD4-208ENST00000589706 APEX2Q9UBZ4 518 aa7.1□□□□□ -1.27
SMAD4-208ENST00000589706 ACTL7BQ9Y614 415 aa7.1□□□□□ -1.27
SMAD4-208ENST00000589706 SPATA31E1Q6ZUB1 1445 aa7.1□□□□□ -1.27
SMAD4-208ENST00000589706 SMG6Q86US8 1419 aaKnown RBP7.1□□□□□ -1.27
SMAD4-208ENST00000589706 POLR3AO14802 1390 aaPredicted RBP7.09□□□□□ -1.27
SMAD4-208ENST00000589706 A0A087X0B3 334 aa7.09□□□□□ -1.27
SMAD4-208ENST00000589706 PPM1BO75688 479 aa7.09□□□□□ -1.27
SMAD4-208ENST00000589706 RGS19P49795 217 aa7.09□□□□□ -1.27
SMAD4-208ENST00000589706 NBPF12Q5TAG4 269 aaPredicted RBP7.09□□□□□ -1.27
SMAD4-208ENST00000589706 FDX2Q6P4F2 183 aa7.09□□□□□ -1.27
SMAD4-208ENST00000589706 ARHGAP27Q6ZUM4 889 aa7.09□□□□□ -1.27
SMAD4-208ENST00000589706 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.09□□□□□ -1.27
SMAD4-208ENST00000589706 ZNF227Q86WZ6 799 aa7.09□□□□□ -1.27
SMAD4-208ENST00000589706 MFSD2AQ8NA29 543 aa7.09□□□□□ -1.27
SMAD4-208ENST00000589706 C2CD4AQ8NCU7 369 aaPredicted RBP7.09□□□□□ -1.27
SMAD4-208ENST00000589706 TRIM11Q96F44 468 aa7.09□□□□□ -1.27
SMAD4-208ENST00000589706 ABHD8Q96I13 439 aa7.09□□□□□ -1.27
SMAD4-208ENST00000589706 MKRN2Q9H000 416 aaKnown RBP7.09□□□□□ -1.27
SMAD4-208ENST00000589706 CAAP1Q9H8G2 361 aa7.09□□□□□ -1.27
SMAD4-208ENST00000589706 FAM105AQ9NUU6 356 aa7.09□□□□□ -1.27
SMAD4-208ENST00000589706 TYW1Q9NV66 732 aaKnown RBP7.09□□□□□ -1.27
SMAD4-208ENST00000589706 PCOLCE2Q9UKZ9 415 aa7.09□□□□□ -1.27
SMAD4-208ENST00000589706 CEP131Q9UPN4 1083 aa7.09□□□□□ -1.27
SMAD4-208ENST00000589706 SUGT1Q9Y2Z0 365 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms