RNA–Protein interactions for RNA: ENST00000586253.1

SMAD4-204, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 784 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-204ENST00000586253 CHST13Q8NET6 341 aa9.32□□□□□ -0.92
SMAD4-204ENST00000586253 NUP133Q8WUM0 1156 aa9.32□□□□□ -0.92
SMAD4-204ENST00000586253 CHMP4CQ96CF2 233 aa9.32□□□□□ -0.92
SMAD4-204ENST00000586253 MTMR8Q96EF0 704 aa9.32□□□□□ -0.92
SMAD4-204ENST00000586253 TCEANC2Q96MN5 208 aa9.32□□□□□ -0.92
SMAD4-204ENST00000586253 PHOX2BQ99453 314 aa9.32□□□□□ -0.92
SMAD4-204ENST00000586253 NUDT12Q9BQG2 462 aa9.32□□□□□ -0.92
SMAD4-204ENST00000586253 MCOLN1Q9GZU1 580 aa9.32□□□□□ -0.92
SMAD4-204ENST00000586253 UPF2Q9HAU5 1272 aaKnown RBP9.32□□□□□ -0.92
SMAD4-204ENST00000586253 CWC22Q9HCG8 908 aaKnown RBP9.32□□□□□ -0.92
SMAD4-204ENST00000586253 RAVER2Q9HCJ3 691 aaKnown RBP9.32□□□□□ -0.92
SMAD4-204ENST00000586253 FBXO40Q9UH90 709 aa9.32□□□□□ -0.92
SMAD4-204ENST00000586253 IVNS1ABPQ9Y6Y0 642 aa9.32□□□□□ -0.92
SMAD4-204ENST00000586253 PLXNB2O15031 1838 aa9.32□□□□□ -0.92
SMAD4-204ENST00000586253 NID2Q14112 1375 aa9.32□□□□□ -0.92
SMAD4-204ENST00000586253 ZBTB43O43298 467 aa9.31□□□□□ -0.92
SMAD4-204ENST00000586253 HOXC6P09630 235 aa9.31□□□□□ -0.92
SMAD4-204ENST00000586253 CPA1P15085 419 aa9.31□□□□□ -0.92
SMAD4-204ENST00000586253 RGS2P41220 211 aa9.31□□□□□ -0.92
SMAD4-204ENST00000586253 RBM25P49756 843 aaKnown RBP9.31□□□□□ -0.92
SMAD4-204ENST00000586253 FLT3LGP49771 235 aa9.31□□□□□ -0.92
SMAD4-204ENST00000586253 LCE2AQ5TA79 106 aaPredicted RBP9.31□□□□□ -0.92
SMAD4-204ENST00000586253 WDR78Q5VTH9 848 aa9.31□□□□□ -0.92
SMAD4-204ENST00000586253 MICU3Q86XE3 530 aa9.31□□□□□ -0.92
SMAD4-204ENST00000586253 TRMT44Q8IYL2 757 aaKnown RBP9.31□□□□□ -0.92
SMAD4-204ENST00000586253 ADGRF4Q8IZF3 695 aa9.31□□□□□ -0.92
SMAD4-204ENST00000586253 CPXCR1Q8N123 301 aa9.31□□□□□ -0.92
SMAD4-204ENST00000586253 FANCBQ8NB91 859 aa9.31□□□□□ -0.92
SMAD4-204ENST00000586253 RAET1EQ8TD07 263 aa9.31□□□□□ -0.92
SMAD4-204ENST00000586253 USP6NLQ92738 828 aa9.31□□□□□ -0.92
SMAD4-204ENST00000586253 SPSB2Q99619 263 aa9.31□□□□□ -0.92
SMAD4-204ENST00000586253 MYL10Q9BUA6 226 aa9.31□□□□□ -0.92
SMAD4-204ENST00000586253 SPZ1Q9BXG8 430 aa9.31□□□□□ -0.92
SMAD4-204ENST00000586253 UBA5Q9GZZ9 404 aa9.31□□□□□ -0.92
SMAD4-204ENST00000586253 MAF1Q9H063 256 aa9.31□□□□□ -0.92
SMAD4-204ENST00000586253 ALDH8A1Q9H2A2 487 aaPredicted RBP9.31□□□□□ -0.92
SMAD4-204ENST00000586253 RIOX1Q9H6W3 641 aa9.31□□□□□ -0.92
SMAD4-204ENST00000586253 RBM28Q9NW13 759 aaKnown RBP9.31□□□□□ -0.92
SMAD4-204ENST00000586253 BRPF3Q9ULD4 1205 aa9.31□□□□□ -0.92
SMAD4-204ENST00000586253 CCPG1Q9ULG6 757 aa9.31□□□□□ -0.92
SMAD4-204ENST00000586253 KLF18A0A0U1RQI7 1052 aa9.3□□□□□ -0.92
SMAD4-204ENST00000586253 CCDC196A0A1B0GTZ2 297 aa9.3□□□□□ -0.92
SMAD4-204ENST00000586253 ZBTB5O15062 677 aa9.3□□□□□ -0.92
SMAD4-204ENST00000586253 FCER1AP12319 257 aa9.3□□□□□ -0.92
SMAD4-204ENST00000586253 TRAF1Q13077 416 aa9.3□□□□□ -0.92
SMAD4-204ENST00000586253 KCTD2Q14681 263 aa9.3□□□□□ -0.92
SMAD4-204ENST00000586253 CDC37Q16543 378 aaPredicted RBP9.3□□□□□ -0.92
SMAD4-204ENST00000586253 CCDC174Q6PII3 467 aa9.3□□□□□ -0.92
SMAD4-204ENST00000586253 TMTC3Q6ZXV5 915 aa9.3□□□□□ -0.92
SMAD4-204ENST00000586253 FAM160A2Q8N612 972 aaPredicted RBP9.3□□□□□ -0.92
SMAD4-204ENST00000586253 BRF1Q92994 677 aa9.3□□□□□ -0.92
SMAD4-204ENST00000586253 AGBL1Q96MI9 1066 aa9.3□□□□□ -0.92
SMAD4-204ENST00000586253 TRERF1Q96PN7 1200 aa9.3□□□□□ -0.92
SMAD4-204ENST00000586253 MMP19Q99542 508 aa9.3□□□□□ -0.92
SMAD4-204ENST00000586253 APBA2Q99767 749 aa9.3□□□□□ -0.92
SMAD4-204ENST00000586253 C22orf23Q9BZE7 217 aa9.3□□□□□ -0.92
SMAD4-204ENST00000586253 UPF3BQ9BZI7 483 aaKnown RBP9.3□□□□□ -0.92
SMAD4-204ENST00000586253 CPVLQ9H3G5 476 aa9.3□□□□□ -0.92
SMAD4-204ENST00000586253 ACAD9Q9H845 621 aa9.3□□□□□ -0.92
SMAD4-204ENST00000586253 JMJD4Q9H9V9 463 aa9.3□□□□□ -0.92
SMAD4-204ENST00000586253 PDRG1Q9NUG6 133 aa9.3□□□□□ -0.92
SMAD4-204ENST00000586253 SLC5A4Q9NY91 659 aa9.3□□□□□ -0.92
SMAD4-204ENST00000586253 GABRQQ9UN88 632 aa9.3□□□□□ -0.92
SMAD4-204ENST00000586253 RIPK3Q9Y572 518 aa9.3□□□□□ -0.92
SMAD4-204ENST00000586253 PTCH2Q9Y6C5 1203 aa9.3□□□□□ -0.92
SMAD4-204ENST00000586253 MYH6P13533 1939 aa9.3□□□□□ -0.92
SMAD4-204ENST00000586253 HTTP42858 3142 aa9.29□□□□□ -0.92
SMAD4-204ENST00000586253 ZNFX1Q9P2E3 1918 aaKnown RBP9.29□□□□□ -0.92
SMAD4-204ENST00000586253 GOLGA8AA7E2F4 631 aa9.29□□□□□ -0.92
SMAD4-204ENST00000586253 GOLGA8BA8MQT2 603 aa9.29□□□□□ -0.92
SMAD4-204ENST00000586253 CYTH3O43739 400 aa9.29□□□□□ -0.92
SMAD4-204ENST00000586253 DHX16O60231 1041 aaKnown RBP9.29□□□□□ -0.92
SMAD4-204ENST00000586253 ADCY3O60266 1144 aa9.29□□□□□ -0.92
SMAD4-204ENST00000586253 RXRAP19793 462 aa9.29□□□□□ -0.92
SMAD4-204ENST00000586253 ADORA2AP29274 412 aa9.29□□□□□ -0.92
SMAD4-204ENST00000586253 GRK4P32298 578 aa9.29□□□□□ -0.92
SMAD4-204ENST00000586253 METAP2P50579 478 aaKnown RBP eCLIP9.29□□□□□ -0.92
SMAD4-204ENST00000586253 SNAP25P60880 206 aa9.29□□□□□ -0.92
SMAD4-204ENST00000586253 APOBRQ0VD83 1088 aa9.29□□□□□ -0.92
SMAD4-204ENST00000586253 TOB2Q14106 344 aaPredicted RBP9.29□□□□□ -0.92
SMAD4-204ENST00000586253 ANKRD1Q15327 319 aa9.29□□□□□ -0.92
SMAD4-204ENST00000586253 RTN1Q16799 776 aa9.29□□□□□ -0.92
SMAD4-204ENST00000586253 QRICH1Q2TAL8 776 aa9.29□□□□□ -0.92
SMAD4-204ENST00000586253 SLC9C1Q4G0N8 1177 aa9.29□□□□□ -0.92
SMAD4-204ENST00000586253 NBPF11Q86T75 865 aa9.29□□□□□ -0.92
SMAD4-204ENST00000586253 TNS4Q8IZW8 715 aa9.29□□□□□ -0.92
SMAD4-204ENST00000586253 NLRP7Q8WX94 980 aa9.29□□□□□ -0.92
SMAD4-204ENST00000586253 ARMC5Q96C12 935 aa9.29□□□□□ -0.92
SMAD4-204ENST00000586253 ZNF274Q96GC6 653 aaPredicted RBP9.29□□□□□ -0.92
SMAD4-204ENST00000586253 AMNQ9BXJ7 453 aa9.29□□□□□ -0.92
SMAD4-204ENST00000586253 BACH2Q9BYV9 841 aa9.29□□□□□ -0.92
SMAD4-204ENST00000586253 AAASQ9NRG9 546 aa9.29□□□□□ -0.92
SMAD4-204ENST00000586253 RNF146Q9NTX7 359 aa9.29□□□□□ -0.92
SMAD4-204ENST00000586253 DIS3Q9Y2L1 958 aaKnown RBP9.29□□□□□ -0.92
SMAD4-204ENST00000586253 PFASO15067 1338 aa9.29□□□□□ -0.92
SMAD4-204ENST00000586253 ABCB11O95342 1321 aa9.29□□□□□ -0.92
SMAD4-204ENST00000586253 BAZ2BQ9UIF8 2168 aaKnown RBP9.29□□□□□ -0.92
SMAD4-204ENST00000586253 SMCHD1A6NHR9 2005 aa9.28□□□□□ -0.92
SMAD4-204ENST00000586253 DNAJC25-GNG10A0A024R161 153 aa9.28□□□□□ -0.92
SMAD4-204ENST00000586253 PNMA6FA0A0J9YX94 578 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms