RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 EDNRBP24530 442 aa20.84■□□□□ 0.93
CCDC40-213ENST00000574933 ALDH5A1P51649 535 aaPredicted RBP20.84■□□□□ 0.93
CCDC40-213ENST00000574933 TRIM29Q14134 588 aa20.84■□□□□ 0.93
CCDC40-213ENST00000574933 UBE2SQ16763 222 aa20.84■□□□□ 0.93
CCDC40-213ENST00000574933 BLIDQ8IZY5 108 aa20.84■□□□□ 0.93
CCDC40-213ENST00000574933 REXO1Q8N1G1 1221 aaKnown RBP20.84■□□□□ 0.93
CCDC40-213ENST00000574933 RAET1EQ8TD07 263 aa20.84■□□□□ 0.93
CCDC40-213ENST00000574933 NSUN6Q8TEA1 469 aaKnown RBP20.84■□□□□ 0.93
CCDC40-213ENST00000574933 PURBQ96QR8 312 aaKnown RBP20.84■□□□□ 0.93
CCDC40-213ENST00000574933 IWS1Q96ST2 819 aa20.84■□□□□ 0.93
CCDC40-213ENST00000574933 RMDN3Q96TC7 470 aa20.84■□□□□ 0.93
CCDC40-213ENST00000574933 PTCH2Q9Y6C5 1203 aa20.84■□□□□ 0.93
CCDC40-213ENST00000574933 SYNGAP1Q96PV0 1343 aa20.83■□□□□ 0.93
CCDC40-213ENST00000574933 ASB14A6NK59 587 aa20.83■□□□□ 0.93
CCDC40-213ENST00000574933 ADCY3O60266 1144 aa20.83■□□□□ 0.93
CCDC40-213ENST00000574933 FBXO46Q6PJ61 603 aaPredicted RBP20.83■□□□□ 0.93
CCDC40-213ENST00000574933 SLAIN1Q8ND83 568 aa20.83■□□□□ 0.93
CCDC40-213ENST00000574933 TRIB2Q92519 343 aa20.83■□□□□ 0.93
CCDC40-213ENST00000574933 TINF2Q9BSI4 451 aa20.83■□□□□ 0.93
CCDC40-213ENST00000574933 PXMP2Q9NR77 195 aa20.83■□□□□ 0.93
CCDC40-213ENST00000574933 FLRT1Q9NZU1 646 aa20.83■□□□□ 0.93
CCDC40-213ENST00000574933 B4DLN1 442 aa20.82■□□□□ 0.92
CCDC40-213ENST00000574933 PDCP20941 246 aa20.82■□□□□ 0.92
CCDC40-213ENST00000574933 CCL14Q16627 93 aa20.82■□□□□ 0.92
CCDC40-213ENST00000574933 FCHSD1Q86WN1 690 aa20.82■□□□□ 0.92
CCDC40-213ENST00000574933 PDCD2LQ9BRP1 358 aa20.82■□□□□ 0.92
CCDC40-213ENST00000574933 BIN2Q9UBW5 565 aaPredicted RBP20.82■□□□□ 0.92
CCDC40-213ENST00000574933 PCDHA6Q9UN73 950 aa20.82■□□□□ 0.92
CCDC40-213ENST00000574933 PCDHA8Q9Y5H6 950 aa20.82■□□□□ 0.92
CCDC40-213ENST00000574933 SPDYE3A6NKU9 549 aa20.81■□□□□ 0.92
CCDC40-213ENST00000574933 LARP1BQ659C4 914 aaKnown RBP20.81■□□□□ 0.92
CCDC40-213ENST00000574933 CRYGNQ8WXF5 182 aa20.81■□□□□ 0.92
CCDC40-213ENST00000574933 TNFRSF25Q93038 417 aa20.81■□□□□ 0.92
CCDC40-213ENST00000574933 ANO3Q9BYT9 981 aa20.81■□□□□ 0.92
CCDC40-213ENST00000574933 TMEM260Q9NX78 707 aa20.81■□□□□ 0.92
CCDC40-213ENST00000574933 NRBP1Q9UHY1 535 aa20.81■□□□□ 0.92
CCDC40-213ENST00000574933 HMGCRP04035 888 aa20.8■□□□□ 0.92
CCDC40-213ENST00000574933 NR3C2P08235 984 aa20.8■□□□□ 0.92
CCDC40-213ENST00000574933 GRK4P32298 578 aa20.8■□□□□ 0.92
CCDC40-213ENST00000574933 KRT2P35908 639 aa20.8■□□□□ 0.92
CCDC40-213ENST00000574933 ANP32AP39687 249 aaKnown RBP20.8■□□□□ 0.92
CCDC40-213ENST00000574933 PGM5Q15124 567 aa20.8■□□□□ 0.92
CCDC40-213ENST00000574933 ARHGEF16Q5VV41 709 aa20.8■□□□□ 0.92
CCDC40-213ENST00000574933 JAKMIP3Q5VZ66 844 aa20.8■□□□□ 0.92
CCDC40-213ENST00000574933 XRRA1Q6P2D8 792 aa20.8■□□□□ 0.92
CCDC40-213ENST00000574933 ARMCX2Q7L311 632 aa20.8■□□□□ 0.92
CCDC40-213ENST00000574933 VSIG10LQ86VR7 867 aa20.8■□□□□ 0.92
CCDC40-213ENST00000574933 MPHOSPH6Q99547 160 aaKnown RBP20.8■□□□□ 0.92
CCDC40-213ENST00000574933 EHMT1Q9H9B1 1298 aa20.8■□□□□ 0.92
CCDC40-213ENST00000574933 BRMS1Q9HCU9 246 aa20.8■□□□□ 0.92
CCDC40-213ENST00000574933 MYH15Q9Y2K3 1946 aa20.79■□□□□ 0.92
CCDC40-213ENST00000574933 SNAI1O95863 264 aaPredicted RBP20.79■□□□□ 0.92
CCDC40-213ENST00000574933 HSP90AA1P07900 732 aaKnown RBP20.79■□□□□ 0.92
CCDC40-213ENST00000574933 PDIA4P13667 645 aaKnown RBP20.79■□□□□ 0.92
CCDC40-213ENST00000574933 EIF2AK2P19525 551 aaKnown RBP20.79■□□□□ 0.92
CCDC40-213ENST00000574933 SREBF1P36956 1147 aa20.79■□□□□ 0.92
CCDC40-213ENST00000574933 SAFBQ15424 915 aaKnown RBP eCLIP20.79■□□□□ 0.92
CCDC40-213ENST00000574933 MAP3K21Q5TCX8 1036 aa20.79■□□□□ 0.92
CCDC40-213ENST00000574933 KRT25Q7Z3Z0 450 aa20.79■□□□□ 0.92
CCDC40-213ENST00000574933 DIS3L2Q8IYB7 885 aaKnown RBP20.79■□□□□ 0.92
CCDC40-213ENST00000574933 RASGRP4Q8TDF6 673 aa20.79■□□□□ 0.92
CCDC40-213ENST00000574933 OXER1Q8TDS5 423 aa20.79■□□□□ 0.92
CCDC40-213ENST00000574933 FOXP1Q9H334 677 aaPredicted RBP20.79■□□□□ 0.92
CCDC40-213ENST00000574933 FOXD4L1Q9NU39 408 aa20.79■□□□□ 0.92
CCDC40-213ENST00000574933 RBM19Q9Y4C8 960 aaKnown RBP20.79■□□□□ 0.92
CCDC40-213ENST00000574933 FRMPD3Q5JV73 1810 aa20.78■□□□□ 0.92
CCDC40-213ENST00000574933 KIAA0100Q14667 2235 aaKnown RBP20.78■□□□□ 0.92
CCDC40-213ENST00000574933 BTBD18B2RXH4 712 aa20.78■□□□□ 0.92
CCDC40-213ENST00000574933 CYP3A4P08684 503 aa20.78■□□□□ 0.92
CCDC40-213ENST00000574933 ELNP15502 786 aa20.78■□□□□ 0.92
CCDC40-213ENST00000574933 FOSBP53539 338 aa20.78■□□□□ 0.92
CCDC40-213ENST00000574933 MFSD14CQ5VZR4 134 aa20.78■□□□□ 0.92
CCDC40-213ENST00000574933 PCNX4Q63HM2 1172 aa20.78■□□□□ 0.92
CCDC40-213ENST00000574933 KATNBL1Q9H079 304 aa20.78■□□□□ 0.92
CCDC40-213ENST00000574933 ABHD16BQ9H3Z7 469 aa20.78■□□□□ 0.92
CCDC40-213ENST00000574933 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.78■□□□□ 0.92
CCDC40-213ENST00000574933 HTTP42858 3142 aa20.78■□□□□ 0.92
CCDC40-213ENST00000574933 STAM2O75886 525 aa20.77■□□□□ 0.92
CCDC40-213ENST00000574933 SYT1P21579 422 aa20.77■□□□□ 0.92
CCDC40-213ENST00000574933 U2AF2P26368 475 aaKnown RBP eCLIP20.77■□□□□ 0.92
CCDC40-213ENST00000574933 GUCY1B3Q02153 619 aa20.77■□□□□ 0.92
CCDC40-213ENST00000574933 STXBP2Q15833 593 aa20.77■□□□□ 0.92
CCDC40-213ENST00000574933 IL31RAQ8NI17 732 aa20.77■□□□□ 0.92
CCDC40-213ENST00000574933 DOCK5Q9H7D0 1870 aa20.76■□□□□ 0.91
CCDC40-213ENST00000574933 EIF3JO75822 258 aaKnown RBP20.76■□□□□ 0.91
CCDC40-213ENST00000574933 CCND2P30279 289 aa20.76■□□□□ 0.91
CCDC40-213ENST00000574933 CYP2C19P33261 490 aa20.76■□□□□ 0.91
CCDC40-213ENST00000574933 MRPS9P82933 396 aaKnown RBP20.76■□□□□ 0.91
CCDC40-213ENST00000574933 PDE4DQ08499 809 aa20.76■□□□□ 0.91
CCDC40-213ENST00000574933 NR5A1Q13285 461 aa20.76■□□□□ 0.91
CCDC40-213ENST00000574933 NONOQ15233 471 aaKnown RBP eCLIP20.76■□□□□ 0.91
CCDC40-213ENST00000574933 ARMC5Q96C12 935 aa20.76■□□□□ 0.91
CCDC40-213ENST00000574933 PGBD1Q96JS3 809 aa20.76■□□□□ 0.91
CCDC40-213ENST00000574933 VTA1Q9NP79 307 aa20.76■□□□□ 0.91
CCDC40-213ENST00000574933 CCDC194A0A1B0GVG4 234 aa20.75■□□□□ 0.91
CCDC40-213ENST00000574933 RBM47A0AV96 593 aaKnown RBP20.75■□□□□ 0.91
CCDC40-213ENST00000574933 H3BQV1 296 aa20.75■□□□□ 0.91
CCDC40-213ENST00000574933 EDIL3O43854 480 aa20.75■□□□□ 0.91
CCDC40-213ENST00000574933 CYBAP13498 195 aa20.75■□□□□ 0.91
CCDC40-213ENST00000574933 USP11P51784 963 aa20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms