RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 AFF3P51826 1226 aaKnown RBP4.99□□□□□ -1.61
NUP88-209ENST00000574855 E4F1Q66K89 784 aaPredicted RBP4.99□□□□□ -1.61
NUP88-209ENST00000574855 ANKS3Q6ZW76 656 aa4.99□□□□□ -1.61
NUP88-209ENST00000574855 ZNF227Q86WZ6 799 aa4.99□□□□□ -1.61
NUP88-209ENST00000574855 FAM129CQ86XR2 697 aa4.99□□□□□ -1.61
NUP88-209ENST00000574855 TMEFF1Q8IYR6 380 aa4.99□□□□□ -1.61
NUP88-209ENST00000574855 NLGN1Q8N2Q7 840 aa4.99□□□□□ -1.61
NUP88-209ENST00000574855 NETO2Q8NC67 525 aa4.99□□□□□ -1.61
NUP88-209ENST00000574855 FRS2Q8WU20 508 aa4.99□□□□□ -1.61
NUP88-209ENST00000574855 BTN2A2Q8WVV5 523 aa4.99□□□□□ -1.61
NUP88-209ENST00000574855 DACT3Q96B18 629 aaPredicted RBP4.99□□□□□ -1.61
NUP88-209ENST00000574855 PWWP2AQ96N64 755 aa4.99□□□□□ -1.61
NUP88-209ENST00000574855 RNF38Q9H0F5 515 aa4.99□□□□□ -1.61
NUP88-209ENST00000574855 ST7Q9NRC1 585 aa4.99□□□□□ -1.61
NUP88-209ENST00000574855 HCFC2Q9Y5Z7 792 aa4.99□□□□□ -1.61
NUP88-209ENST00000574855 SCG5P05408 212 aa4.98□□□□□ -1.61
NUP88-209ENST00000574855 SNRPB2P08579 225 aaKnown RBP4.98□□□□□ -1.61
NUP88-209ENST00000574855 NCAM1P13591 858 aa4.98□□□□□ -1.61
NUP88-209ENST00000574855 BMP7P18075 431 aa4.98□□□□□ -1.61
NUP88-209ENST00000574855 IGFBP6P24592 240 aaPredicted RBP4.98□□□□□ -1.61
NUP88-209ENST00000574855 ECI1P42126 302 aa4.98□□□□□ -1.61
NUP88-209ENST00000574855 KCNJ6P48051 423 aa4.98□□□□□ -1.61
NUP88-209ENST00000574855 WWC2Q6AWC2 1192 aa4.98□□□□□ -1.61
NUP88-209ENST00000574855 MRM1Q6IN84 353 aaKnown RBP4.98□□□□□ -1.61
NUP88-209ENST00000574855 NPLOC4Q8TAT6 608 aa4.98□□□□□ -1.61
NUP88-209ENST00000574855 HNRNPLLQ8WVV9 542 aaKnown RBP4.98□□□□□ -1.61
NUP88-209ENST00000574855 ALG3Q92685 438 aa4.98□□□□□ -1.61
NUP88-209ENST00000574855 TSPAN17Q96FV3 270 aa4.98□□□□□ -1.61
NUP88-209ENST00000574855 EPB41L4AQ9HCS5 686 aaPredicted RBP4.98□□□□□ -1.61
NUP88-209ENST00000574855 FBLN5Q9UBX5 448 aa4.98□□□□□ -1.61
NUP88-209ENST00000574855 FAN1Q9Y2M0 1017 aa4.98□□□□□ -1.61
NUP88-209ENST00000574855 TIMM13Q9Y5L4 95 aaPredicted RBP4.98□□□□□ -1.61
NUP88-209ENST00000574855 MEFVO15553 781 aaPredicted RBP4.97□□□□□ -1.61
NUP88-209ENST00000574855 TBX1O43435 398 aa4.97□□□□□ -1.61
NUP88-209ENST00000574855 MYO1BO43795 1136 aa4.97□□□□□ -1.61
NUP88-209ENST00000574855 NTRK1P04629 796 aa4.97□□□□□ -1.61
NUP88-209ENST00000574855 FBLN1P23142 703 aa4.97□□□□□ -1.61
NUP88-209ENST00000574855 ZC3H6P61129 1189 aaKnown RBP4.97□□□□□ -1.61
NUP88-209ENST00000574855 RPL11P62913 178 aaKnown RBP4.97□□□□□ -1.61
NUP88-209ENST00000574855 FOXO4P98177 505 aa4.97□□□□□ -1.61
NUP88-209ENST00000574855 DDR2Q16832 855 aa4.97□□□□□ -1.61
NUP88-209ENST00000574855 INF2Q27J81 1249 aa4.97□□□□□ -1.61
NUP88-209ENST00000574855 MBLAC2Q68D91 279 aa4.97□□□□□ -1.61
NUP88-209ENST00000574855 DHX37Q8IY37 1157 aaKnown RBP4.97□□□□□ -1.61
NUP88-209ENST00000574855 MARCH10Q8NA82 808 aaPredicted RBP4.97□□□□□ -1.61
NUP88-209ENST00000574855 PLEKHO2Q8TD55 490 aa4.97□□□□□ -1.61
NUP88-209ENST00000574855 DPF3Q92784 378 aa4.97□□□□□ -1.61
NUP88-209ENST00000574855 DIO2Q92813 273 aa4.97□□□□□ -1.61
NUP88-209ENST00000574855 ZCCHC4Q9H5U6 513 aa4.97□□□□□ -1.61
NUP88-209ENST00000574855 RXFP1Q9HBX9 757 aa4.97□□□□□ -1.61
NUP88-209ENST00000574855 BTG4Q9NY30 223 aa4.97□□□□□ -1.61
NUP88-209ENST00000574855 MARCH2Q9P0N8 246 aa4.97□□□□□ -1.61
NUP88-209ENST00000574855 USP35Q9P2H5 1018 aa4.97□□□□□ -1.61
NUP88-209ENST00000574855 C22orf46C9J442 243 aa4.96□□□□□ -1.62
NUP88-209ENST00000574855 KLF4O43474 513 aa4.96□□□□□ -1.62
NUP88-209ENST00000574855 ASGR2P07307 311 aa4.96□□□□□ -1.62
NUP88-209ENST00000574855 INHBBP09529 407 aa4.96□□□□□ -1.62
NUP88-209ENST00000574855 GTF2A2P52657 109 aa4.96□□□□□ -1.62
NUP88-209ENST00000574855 CYP4F3Q08477 520 aa4.96□□□□□ -1.62
NUP88-209ENST00000574855 KCNAB2Q13303 367 aa4.96□□□□□ -1.62
NUP88-209ENST00000574855 SF1Q15637 639 aaKnown RBP4.96□□□□□ -1.62
NUP88-209ENST00000574855 SLC10A6Q3KNW5 377 aa4.96□□□□□ -1.62
NUP88-209ENST00000574855 TTLL10Q6ZVT0 673 aa4.96□□□□□ -1.62
NUP88-209ENST00000574855 DCP2Q8IU60 420 aaKnown RBP4.96□□□□□ -1.62
NUP88-209ENST00000574855 CELF2-AS1Q8N7Q2 184 aa4.96□□□□□ -1.62
NUP88-209ENST00000574855 AP5M1Q9H0R1 490 aa4.96□□□□□ -1.62
NUP88-209ENST00000574855 PARD6AQ9NPB6 346 aa4.96□□□□□ -1.62
NUP88-209ENST00000574855 RAPGEFL1Q9UHV5 662 aa4.96□□□□□ -1.62
NUP88-209ENST00000574855 IQCA1LA6NCM1 817 aa4.95□□□□□ -1.62
NUP88-209ENST00000574855 STK10O94804 968 aaKnown RBP4.95□□□□□ -1.62
NUP88-209ENST00000574855 SASH1O94885 1247 aa4.95□□□□□ -1.62
NUP88-209ENST00000574855 ATF2P15336 505 aa4.95□□□□□ -1.62
NUP88-209ENST00000574855 LIMS1P48059 325 aa4.95□□□□□ -1.62
NUP88-209ENST00000574855 GFRA1P56159 465 aa4.95□□□□□ -1.62
NUP88-209ENST00000574855 CAP1Q01518 475 aa4.95□□□□□ -1.62
NUP88-209ENST00000574855 TESK1Q15569 626 aa4.95□□□□□ -1.62
NUP88-209ENST00000574855 NAALADL2Q58DX5 795 aa4.95□□□□□ -1.62
NUP88-209ENST00000574855 ACBD5Q5T8D3 534 aaPredicted RBP4.95□□□□□ -1.62
NUP88-209ENST00000574855 MROH9Q5TGP6 573 aa4.95□□□□□ -1.62
NUP88-209ENST00000574855 CEP68Q76N32 757 aa4.95□□□□□ -1.62
NUP88-209ENST00000574855 CCDC103Q8IW40 242 aa4.95□□□□□ -1.62
NUP88-209ENST00000574855 TEX2Q8IWB9 1127 aa4.95□□□□□ -1.62
NUP88-209ENST00000574855 PPIL6Q8IXY8 311 aa4.95□□□□□ -1.62
NUP88-209ENST00000574855 LINC01356Q8N9X3 169 aa4.95□□□□□ -1.62
NUP88-209ENST00000574855 KREMEN2Q8NCW0 462 aa4.95□□□□□ -1.62
NUP88-209ENST00000574855 CPA5Q8WXQ8 436 aa4.95□□□□□ -1.62
NUP88-209ENST00000574855 TRMT2BQ96GJ1 504 aaKnown RBP4.95□□□□□ -1.62
NUP88-209ENST00000574855 TRIM55Q9BYV6 548 aa4.95□□□□□ -1.62
NUP88-209ENST00000574855 PPP1R1BQ9UD71 204 aaPredicted RBP4.95□□□□□ -1.62
NUP88-209ENST00000574855 TMEFF2Q9UIK5 374 aaPredicted RBP4.95□□□□□ -1.62
NUP88-209ENST00000574855 PLA2G2DQ9UNK4 145 aa4.95□□□□□ -1.62
NUP88-209ENST00000574855 A0A1W2PQU0 124 aa4.94□□□□□ -1.62
NUP88-209ENST00000574855 PMLP29590 882 aa4.94□□□□□ -1.62
NUP88-209ENST00000574855 LTBRP36941 435 aa4.94□□□□□ -1.62
NUP88-209ENST00000574855 BCL6P41182 706 aa4.94□□□□□ -1.62
NUP88-209ENST00000574855 PPP2R2AP63151 447 aa4.94□□□□□ -1.62
NUP88-209ENST00000574855 RAB33AQ14088 237 aa4.94□□□□□ -1.62
NUP88-209ENST00000574855 HSP90AA2PQ14568 343 aaPredicted RBP4.94□□□□□ -1.62
NUP88-209ENST00000574855 PRSS53Q2L4Q9 553 aa4.94□□□□□ -1.62
NUP88-209ENST00000574855 VMACQ2NL98 169 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms