RNA–Protein interactions for RNA: ENST00000571409.1

CTDNEP1-206, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 5

Gene CTDNEP1, Length 741 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-206ENST00000571409 SHHQ15465 462 aa35.22■■■■□ 3.23
CTDNEP1-206ENST00000571409 FAM126BQ8IXS8 530 aa35.22■■■■□ 3.23
CTDNEP1-206ENST00000571409 ZNF654Q8IZM8 581 aa35.22■■■■□ 3.23
CTDNEP1-206ENST00000571409 SLC43A3Q8NBI5 491 aa35.22■■■■□ 3.23
CTDNEP1-206ENST00000571409 TLR3O15455 904 aaKnown RBP35.21■■■■□ 3.23
CTDNEP1-206ENST00000571409 CPT1AP50416 773 aa35.21■■■■□ 3.23
CTDNEP1-206ENST00000571409 HSD17B4P51659 736 aa35.21■■■■□ 3.23
CTDNEP1-206ENST00000571409 ITGA7Q13683 1181 aa35.21■■■■□ 3.23
CTDNEP1-206ENST00000571409 COL9A3Q14050 684 aaPredicted RBP35.21■■■■□ 3.23
CTDNEP1-206ENST00000571409 C9orf50Q5SZB4 431 aa35.21■■■■□ 3.23
CTDNEP1-206ENST00000571409 ARHGEF16Q5VV41 709 aa35.21■■■■□ 3.23
CTDNEP1-206ENST00000571409 GPR153Q6NV75 609 aa35.21■■■■□ 3.23
CTDNEP1-206ENST00000571409 IWS1Q96ST2 819 aa35.21■■■■□ 3.23
CTDNEP1-206ENST00000571409 MYL10Q9BUA6 226 aa35.21■■■■□ 3.23
CTDNEP1-206ENST00000571409 TXNP10599 105 aaKnown RBP35.2■■■■□ 3.23
CTDNEP1-206ENST00000571409 TTLL4Q14679 1199 aa35.2■■■■□ 3.23
CTDNEP1-206ENST00000571409 COPS5Q92905 334 aa35.2■■■■□ 3.23
CTDNEP1-206ENST00000571409 TMEM87BQ96K49 555 aa35.2■■■■□ 3.23
CTDNEP1-206ENST00000571409 MAP3K14Q99558 947 aa35.2■■■■□ 3.23
CTDNEP1-206ENST00000571409 SH2B2O14492 632 aaPredicted RBP35.19■■■■□ 3.22
CTDNEP1-206ENST00000571409 GRIN2DO15399 1336 aa35.19■■■■□ 3.22
CTDNEP1-206ENST00000571409 DDAH1O94760 285 aa35.19■■■■□ 3.22
CTDNEP1-206ENST00000571409 TIMP1P01033 207 aa35.19■■■■□ 3.22
CTDNEP1-206ENST00000571409 EIF2AK2P19525 551 aaKnown RBP35.19■■■■□ 3.22
CTDNEP1-206ENST00000571409 PSMC6P62333 389 aa35.19■■■■□ 3.22
CTDNEP1-206ENST00000571409 GHRHRQ02643 423 aa35.19■■■■□ 3.22
CTDNEP1-206ENST00000571409 TRAF1Q13077 416 aa35.19■■■■□ 3.22
CTDNEP1-206ENST00000571409 STXBP2Q15833 593 aa35.19■■■■□ 3.22
CTDNEP1-206ENST00000571409 NFXL1Q6ZNB6 911 aa35.19■■■■□ 3.22
CTDNEP1-206ENST00000571409 CTCFLQ8NI51 663 aaPredicted RBP35.19■■■■□ 3.22
CTDNEP1-206ENST00000571409 POLR3EQ9NVU0 708 aa35.19■■■■□ 3.22
CTDNEP1-206ENST00000571409 PNMA6FA0A0J9YX94 578 aa35.18■■■■□ 3.22
CTDNEP1-206ENST00000571409 CDC45O75419 566 aa35.18■■■■□ 3.22
CTDNEP1-206ENST00000571409 ARIH2O95376 493 aa35.18■■■■□ 3.22
CTDNEP1-206ENST00000571409 FPGSQ05932 587 aa35.18■■■■□ 3.22
CTDNEP1-206ENST00000571409 SEPT14Q6ZU15 432 aa35.18■■■■□ 3.22
CTDNEP1-206ENST00000571409 TMTC2Q8N394 836 aa35.18■■■■□ 3.22
CTDNEP1-206ENST00000571409 PXMP2Q9NR77 195 aa35.18■■■■□ 3.22
CTDNEP1-206ENST00000571409 MAP3K20Q9NYL2 800 aaKnown RBP35.18■■■■□ 3.22
CTDNEP1-206ENST00000571409 BAZ2BQ9UIF8 2168 aaKnown RBP35.18■■■■□ 3.22
CTDNEP1-206ENST00000571409 CCDC69A6NI79 296 aa35.17■■■■□ 3.22
CTDNEP1-206ENST00000571409 CD4P01730 458 aa35.17■■■■□ 3.22
CTDNEP1-206ENST00000571409 MYL3P08590 195 aa35.17■■■■□ 3.22
CTDNEP1-206ENST00000571409 KIAA1217Q5T5P2 1943 aa35.16■■■■□ 3.22
CTDNEP1-206ENST00000571409 KIF5BP33176 963 aa35.16■■■■□ 3.22
CTDNEP1-206ENST00000571409 EPHB4P54760 987 aa35.16■■■■□ 3.22
CTDNEP1-206ENST00000571409 PURAQ00577 322 aaKnown RBP35.16■■■■□ 3.22
CTDNEP1-206ENST00000571409 BRDTQ58F21 947 aaPredicted RBP35.16■■■■□ 3.22
CTDNEP1-206ENST00000571409 RNF20Q5VTR2 975 aa35.16■■■■□ 3.22
CTDNEP1-206ENST00000571409 SAMD3Q8N6K7 520 aa35.16■■■■□ 3.22
CTDNEP1-206ENST00000571409 PIBF1Q8WXW3 757 aa35.16■■■■□ 3.22
CTDNEP1-206ENST00000571409 SEZ6LQ9BYH1 1024 aa35.16■■■■□ 3.22
CTDNEP1-206ENST00000571409 HOXA13P31271 388 aaPredicted RBP35.15■■■■□ 3.22
CTDNEP1-206ENST00000571409 CCDC62Q6P9F0 684 aa35.15■■■■□ 3.22
CTDNEP1-206ENST00000571409 NR3C2P08235 984 aa35.14■■■■□ 3.22
CTDNEP1-206ENST00000571409 LIFRP42702 1097 aa35.14■■■■□ 3.22
CTDNEP1-206ENST00000571409 MFSD5Q6N075 450 aa35.14■■■■□ 3.22
CTDNEP1-206ENST00000571409 SPZ1Q9BXG8 430 aa35.14■■■■□ 3.22
CTDNEP1-206ENST00000571409 LRRC2Q9BYS8 371 aa35.14■■■■□ 3.22
CTDNEP1-206ENST00000571409 PPP1R12CQ9BZL4 782 aa35.14■■■■□ 3.22
CTDNEP1-206ENST00000571409 LY6KQ17RY6 165 aa35.13■■■■□ 3.21
CTDNEP1-206ENST00000571409 Q7L0L9 218 aa35.13■■■■□ 3.21
CTDNEP1-206ENST00000571409 DEFB123Q8N688 67 aa35.13■■■■□ 3.21
CTDNEP1-206ENST00000571409 MTG1Q9BT17 334 aaPredicted RBP35.13■■■■□ 3.21
CTDNEP1-206ENST00000571409 A6NJR5 290 aa35.12■■■■□ 3.21
CTDNEP1-206ENST00000571409 GCOM1H8Y6P7 765 aaPredicted RBP35.12■■■■□ 3.21
CTDNEP1-206ENST00000571409 EIF3JO75822 258 aaKnown RBP35.12■■■■□ 3.21
CTDNEP1-206ENST00000571409 POLR2MP0CAP2 368 aa35.12■■■■□ 3.21
CTDNEP1-206ENST00000571409 B4GALT4O60513 344 aa35.11■■■■□ 3.21
CTDNEP1-206ENST00000571409 RXRAP19793 462 aa35.11■■■■□ 3.21
CTDNEP1-206ENST00000571409 RRP36Q96EU6 259 aaKnown RBP35.11■■■■□ 3.21
CTDNEP1-206ENST00000571409 LZTS2Q9BRK4 669 aa35.11■■■■□ 3.21
CTDNEP1-206ENST00000571409 PDCD2LQ9BRP1 358 aa35.11■■■■□ 3.21
CTDNEP1-206ENST00000571409 TRPV6Q9H1D0 765 aa35.11■■■■□ 3.21
CTDNEP1-206ENST00000571409 PLEKHA8P1O95397 391 aa35.1■■■■□ 3.21
CTDNEP1-206ENST00000571409 GH1P01241 217 aa35.1■■■■□ 3.21
CTDNEP1-206ENST00000571409 CALM1P0DP23 149 aa35.1■■■■□ 3.21
CTDNEP1-206ENST00000571409 CALM2P0DP24 149 aa35.1■■■■□ 3.21
CTDNEP1-206ENST00000571409 CALM3P0DP25 149 aa35.1■■■■□ 3.21
CTDNEP1-206ENST00000571409 MYCLP12524 364 aaPredicted RBP35.1■■■■□ 3.21
CTDNEP1-206ENST00000571409 SMARCA1P28370 1054 aa35.1■■■■□ 3.21
CTDNEP1-206ENST00000571409 GNAQP50148 359 aa35.1■■■■□ 3.21
CTDNEP1-206ENST00000571409 RNPC3Q96LT9 517 aaKnown RBP35.1■■■■□ 3.21
CTDNEP1-206ENST00000571409 NEK1Q96PY6 1258 aa35.1■■■■□ 3.21
CTDNEP1-206ENST00000571409 KPNA6O60684 536 aa35.09■■■■□ 3.21
CTDNEP1-206ENST00000571409 PGM5Q15124 567 aa35.09■■■■□ 3.21
CTDNEP1-206ENST00000571409 FCHSD1Q86WN1 690 aa35.09■■■■□ 3.21
CTDNEP1-206ENST00000571409 RAB11FIP4Q86YS3 637 aa35.09■■■■□ 3.21
CTDNEP1-206ENST00000571409 TMEM199Q8N511 208 aa35.09■■■■□ 3.21
CTDNEP1-206ENST00000571409 ALDH8A1Q9H2A2 487 aaPredicted RBP35.09■■■■□ 3.21
CTDNEP1-206ENST00000571409 SLC12A7Q9Y666 1083 aa35.09■■■■□ 3.21
CTDNEP1-206ENST00000571409 ARHGAP1Q07960 439 aa35.08■■■■□ 3.21
CTDNEP1-206ENST00000571409 PPIGQ13427 754 aaKnown RBP eCLIP35.08■■■■□ 3.212e-6■■■□□ 18
CTDNEP1-206ENST00000571409 SRBD1Q8N5C6 995 aaKnown RBP35.08■■■■□ 3.21
CTDNEP1-206ENST00000571409 HIPK3Q9H422 1215 aa35.08■■■■□ 3.21
CTDNEP1-206ENST00000571409 SEC63Q9UGP8 760 aaKnown RBP35.08■■■■□ 3.21
CTDNEP1-206ENST00000571409 DDX41Q9UJV9 622 aaKnown RBP35.08■■■■□ 3.21
CTDNEP1-206ENST00000571409 MRVI1Q9Y6F6 885 aa35.08■■■■□ 3.21
CTDNEP1-206ENST00000571409 CSF2RAP15509 400 aa35.07■■■■□ 3.2
CTDNEP1-206ENST00000571409 CYP2C18P33260 490 aa35.07■■■■□ 3.2
Retrieved 100 of 20,778 RNA–protein pairs in 547.9 ms